Import phyloseq object

rds format

library(phyloseq)
library(tidyverse)
ps <- readRDS(file = "~/storage/al_R/rf/ps.f.dec.rds")

nice rownames

sample_names(ps) <- paste0(ps@sam_data$Description, "_", stringr::str_split_fixed(sample_names(ps), "elimov.", 2)[,2])
ps@sam_data
##                       Filename Description Plant Inoculation Al    BineM
## s1903_In_10    belimov-10_S146    s1903_In s1903           +  - 5.405000
## s1903_In_11    belimov-11_S147    s1903_In s1903           +  - 5.205000
## s1903_In_12    belimov-12_S148    s1903_In s1903           +  - 6.450000
## s1903_In_Al_13 belimov-13_S149 s1903_In_Al s1903           +  + 6.480000
## s1903_In_Al_14 belimov-14_S150 s1903_In_Al s1903           +  + 6.280000
## s1903_In_Al_15 belimov-15_S151 s1903_In_Al s1903           +  + 5.010000
## s1903_In_Al_16 belimov-16_S152 s1903_In_Al s1903           +  + 5.730000
## s7307_17       belimov-17_S153       s7307 s7307           -  - 5.483333
## s7307_18       belimov-18_S154       s7307 s7307           -  - 7.340000
## s7307_19       belimov-19_S155       s7307 s7307           -  - 6.860000
## s1903_1         belimov-1_S137       s1903 s1903           -  - 4.405000
## s7307_20       belimov-20_S156       s7307 s7307           -  - 5.250000
## s7307_Al_21    belimov-21_S157    s7307_Al s7307           -  + 7.345000
## s7307_Al_22    belimov-22_S158    s7307_Al s7307           -  + 4.980000
## s7307_Al_23    belimov-23_S159    s7307_Al s7307           -  + 5.750000
## s7307_Al_24    belimov-24_S160    s7307_Al s7307           -  + 5.830000
## s7307_In_25    belimov-25_S161    s7307_In s7307           +  - 7.610000
## s7307_In_26    belimov-26_S162    s7307_In s7307           +  - 7.490000
## s7307_In_27    belimov-27_S163    s7307_In s7307           +  - 8.110000
## s7307_In_28    belimov-28_S164    s7307_In s7307           +  - 6.945000
## s7307_In_Al_29 belimov-29_S165 s7307_In_Al s7307           +  + 6.270000
## s1903_2         belimov-2_S138       s1903 s1903           -  - 5.250000
## s7307_In_Al_30 belimov-30_S166 s7307_In_Al s7307           +  + 7.295000
## s7307_In_Al_31 belimov-31_S167 s7307_In_Al s7307           +  + 6.535000
## s7307_In_Al_32 belimov-32_S168 s7307_In_Al s7307           +  + 7.080000
## s8473_33       belimov-33_S169       s8473 s8473           -  - 2.940000
## s8473_34       belimov-34_S170       s8473 s8473           -  - 2.755000
## s8473_35       belimov-35_S171       s8473 s8473           -  - 2.680000
## s8473_36       belimov-36_S172       s8473 s8473           -  - 3.115000
## s8473_Al_37    belimov-37_S173    s8473_Al s8473           -  + 2.590000
## s8473_Al_38    belimov-38_S174    s8473_Al s8473           -  + 2.255000
## s8473_Al_39    belimov-39_S175    s8473_Al s8473           -  + 2.040000
## s1903_3         belimov-3_S139       s1903 s1903           -  - 5.185000
## s8473_Al_40    belimov-40_S176    s8473_Al s8473           -  + 2.115000
## s8473_In_41    belimov-41_S177    s8473_In s8473           +  - 3.420000
## s8473_In_42    belimov-42_S178    s8473_In s8473           +  - 2.815000
## s8473_In_43    belimov-43_S179    s8473_In s8473           +  - 2.825000
## s8473_In_44    belimov-44_S180    s8473_In s8473           +  - 3.555000
## s8473_In_Al_45 belimov-45_S181 s8473_In_Al s8473           +  + 2.265000
## s8473_In_Al_46 belimov-46_S182 s8473_In_Al s8473           +  + 2.380000
## s8473_In_Al_47 belimov-47_S183 s8473_In_Al s8473           +  + 2.725000
## s8473_In_Al_48 belimov-48_S184 s8473_In_Al s8473           +  + 3.190000
## s8353_49       belimov-49_S185       s8353 s8353           -  - 2.890000
## s1903_4         belimov-4_S140       s1903 s1903           -  - 5.305000
## s8353_50       belimov-50_S186       s8353 s8353           -  - 3.265000
## s8353_51       belimov-51_S187       s8353 s8353           -  - 3.315000
## s8353_52       belimov-52_S188       s8353 s8353           -  - 3.360000
## s8353_Al_53    belimov-53_S189    s8353_Al s8353           -  + 2.635000
## s8353_Al_54    belimov-54_S190    s8353_Al s8353           -  + 2.225000
## s8353_Al_55    belimov-55_S191    s8353_Al s8353           -  + 2.010000
## s8353_Al_56    belimov-56_S192    s8353_Al s8353           -  + 2.745000
## s8353_In_57    belimov-57_S193    s8353_In s8353           +  - 3.330000
## s8353_In_58    belimov-58_S194    s8353_In s8353           +  - 3.040000
## s8353_In_59    belimov-59_S195    s8353_In s8353           +  - 3.290000
## s1903_Al_5      belimov-5_S141    s1903_Al s1903           -  + 4.450000
## s8353_In_60    belimov-60_S196    s8353_In s8353           +  - 3.660000
## s8353_In_Al_61 belimov-61_S197 s8353_In_Al s8353           +  + 2.805000
## s8353_In_Al_62 belimov-62_S198 s8353_In_Al s8353           +  + 2.975000
## s1903_Al_6      belimov-6_S142    s1903_Al s1903           -  + 3.585000
## s1903_Al_7      belimov-7_S143    s1903_Al s1903           -  + 4.335000
## s1903_Al_8      belimov-8_S144    s1903_Al s1903           -  + 4.730000
## s1903_In_9      belimov-9_S145    s1903_In s1903           +  - 6.510000
##                    SeedM BineSeedM SeedN  SeedMOne NodPerPlant NodPerPlant.1
## s1903_In_10     4.735000    10.140    39 121.41026          54         21.00
## s1903_In_11     4.070000     9.275    38 107.10526          85         20.70
## s1903_In_12     5.470000    11.920    36 151.94444         100         30.00
## s1903_In_Al_13  4.280000    10.760    31 138.06452         107         25.00
## s1903_In_Al_14  5.025000    11.305    38 132.23684         118         36.23
## s1903_In_Al_15  4.510000     9.520    39 115.64103          71         24.40
## s1903_In_Al_16  4.560000    10.290    33 138.18182          87         27.00
## s7307_17        9.456667    14.940    36 262.68519          64         40.40
## s7307_18        9.185000    16.525    38 241.71053          37         14.80
## s7307_19       10.075000    16.935    41 245.73171         132         65.90
## s1903_1         4.660000     9.065    40 116.50000          45         11.80
## s7307_20        6.890000    12.140    28 246.07143          88         40.70
## s7307_Al_21     6.420000    13.765    25 256.80000         189         38.20
## s7307_Al_22     7.255000    12.235    30 241.83333          76         28.10
## s7307_Al_23     5.890000    11.640    29 203.10345          99         22.50
## s7307_Al_24     6.510000    12.340    32 203.43750          79         23.70
## s7307_In_25     9.125000    16.735    35 260.71429         110         58.20
## s7307_In_26    10.345000    17.835    37 279.59459         122         39.00
## s7307_In_27    10.110000    18.220    37 273.24324         108         67.40
## s7307_In_28     8.650000    15.595    33 262.12121          98         41.80
## s7307_In_Al_29  8.055000    14.325    33 244.09091         119         17.30
## s1903_2         5.410000    10.660    43 125.81395          12          5.10
## s7307_In_Al_30  6.125000    13.420    28 218.75000         238         97.60
## s7307_In_Al_31  6.740000    13.275    28 240.71429         184         45.00
## s7307_In_Al_32  6.080000    13.160    29 209.65517         281         30.70
## s8473_33        2.305000     5.245    23 100.21739         131         34.60
## s8473_34        1.425000     4.180    17  83.82353         169         30.00
## s8473_35        1.665000     4.345    16 104.06250         227         35.30
## s8473_36        2.175000     5.290    22  98.86364         176         33.30
## s8473_Al_37     1.205000     3.795    11 109.54545         146         25.90
## s8473_Al_38     1.445000     3.700    16  90.31250         101         21.40
## s8473_Al_39     1.410000     3.450    15  94.00000          75         16.20
## s1903_3         3.720000     8.905    28 132.85714          36         11.00
## s8473_Al_40     1.205000     3.320    13  92.69231         140         33.30
## s8473_In_41     3.920000     7.340    40  98.00000         169         52.30
## s8473_In_42     2.465000     5.280    28  88.03571         240         36.50
## s8473_In_43     3.130000     5.955    25 125.20000         269         37.50
## s8473_In_44     3.015000     6.570    30 100.50000         275         58.00
## s8473_In_Al_45  2.045000     4.310    20 102.25000         244         50.00
## s8473_In_Al_46  2.155000     4.535    21 102.61905         201         37.00
## s8473_In_Al_47  2.025000     4.750    21  96.42857         246         41.80
## s8473_In_Al_48  2.090000     5.280    22  95.00000         178         45.00
## s8353_49        4.110000     7.000    19 216.31579          20         11.80
## s1903_4         4.025000     9.330    41  98.17073          39         11.60
## s8353_50        4.160000     7.425    17 244.70588          33         10.00
## s8353_51        5.055000     8.370    20 252.75000          18          4.20
## s8353_52        6.050000     9.410    23 263.04348          53         14.60
## s8353_Al_53     4.670000     7.305    20 233.50000          14          4.20
## s8353_Al_54     3.600000     5.825    14 257.14286           8          4.00
## s8353_Al_55     2.935000     4.945    13 225.76923          12          7.00
## s8353_Al_56     4.265000     7.010    17 250.88235          10          2.70
## s8353_In_57     5.650000     8.980    22 256.81818          90         25.00
## s8353_In_58     5.115000     8.155    20 255.75000          82         19.50
## s8353_In_59     5.285000     8.575    20 264.25000         127         30.80
## s1903_Al_5      3.820000     8.270    33 115.75758           8          2.00
## s8353_In_60     6.780000    10.440    26 260.76923          30         16.00
## s8353_In_Al_61  4.750000     7.555    18 263.88889          26          8.70
## s8353_In_Al_62  4.890000     7.865    20 244.50000          30         11.20
## s1903_Al_6      3.750000     7.335    32 117.18750           7          3.00
## s1903_Al_7      4.110000     8.445    36 114.16667          20          5.80
## s1903_Al_8      3.810000     8.540    30 127.00000           8          3.00
## s1903_In_9      5.980000    12.490    50 119.60000          65         23.00
##                   Mic    Ves   Arb   pH   NitBine    Nit15 NitPerPlant
## s1903_In_10    24.300 10.000  4.00 7.18  7.404185 4.390080    40.01962
## s1903_In_11    11.300  9.300  7.30 7.30  7.695128 4.427031    40.05314
## s1903_In_12    60.700 28.700 36.00 6.99  7.732603 4.442804    49.87529
## s1903_In_Al_13  2.000 14.700  4.00 5.79  9.319207 2.850500    60.38846
## s1903_In_Al_14  2.300  6.000  3.00 5.64 10.447947 2.747578    65.61311
## s1903_In_Al_15 12.300  1.300 18.70 5.16 10.286151 2.823908    51.53362
## s1903_In_Al_16  3.700  4.700  0.70 5.76  9.977519 2.757287    57.17118
## s7307_17       45.300 35.300  8.70 6.64  6.439298 2.011899    35.30882
## s7307_18       31.300 25.300 10.70 7.27  6.205646 2.031352    45.54944
## s7307_19       18.000  4.700  9.30 6.84  6.526465 2.038802    44.77155
## s1903_1        45.000 14.700 27.30 7.52  7.680124 3.510780    33.83095
## s7307_20       24.000  4.000 10.70 7.15  6.570565 1.998223    34.49547
## s7307_Al_21    34.000  9.300 17.30 5.67  7.497540 2.647403    55.06943
## s7307_Al_22    64.700 17.300 57.30 5.68  6.966506 2.625018    34.69320
## s7307_Al_23    49.000 18.700 34.70 5.49  7.259171 2.600545    41.74023
## s7307_Al_24    40.300  6.000 38.00 5.39  6.813653 2.585428    39.72360
## s7307_In_25    32.000 17.300 19.30 7.46  5.338359 1.986242    40.62492
## s7307_In_26    50.000 32.700 24.70 6.93  5.311623 2.022861    39.78406
## s7307_In_27    36.300 14.000 23.30 7.27  5.676398 2.023628    46.03559
## s7307_In_28    38.000 12.700 16.70 7.68  6.078722 1.963812    42.21672
## s7307_In_Al_29 67.000 47.300 32.70 5.69  7.056575 2.536297    44.24472
## s1903_2        85.000 43.300 68.00 7.52  6.626483 3.507854    34.78904
## s7307_In_Al_30 61.300 38.000 47.30 5.75  7.408234 2.553589    54.04307
## s7307_In_Al_31 49.700 23.300 35.30 5.44  6.929861 2.576971    45.28664
## s7307_In_Al_32 71.700 60.000 48.00 5.38  7.022268 2.599355    49.71766
## s8473_33       80.000 16.000 70.00 7.02 12.933638 4.169131    38.02490
## s8473_34       66.300  8.000 67.30 6.85 12.153975 4.158317    33.48420
## s8473_35       59.700  5.300 48.70 7.58 11.903076 4.181326    31.90024
## s8473_36       44.000  2.000 25.30 6.97 12.785893 4.184960    39.82806
## s8473_Al_37    80.000 18.700 67.30 5.76 10.020194 4.353843    25.95230
## s8473_Al_38    69.000 19.300 63.30 5.97 10.199323 4.384259    22.99947
## s8473_Al_39    63.000 28.000 44.70 5.73 10.768318 4.353593    21.96737
## s1903_3        59.000 22.700 36.70 7.49  7.094977 3.495322    36.78746
## s8473_Al_40    57.000 13.300 39.30 6.03 10.365260 4.363636    21.92252
## s8473_In_41    13.000  7.300 13.30 7.12 10.473632 3.408149    35.81982
## s8473_In_42    74.000 21.300 74.00 7.56  8.787095 3.485019    24.73567
## s8473_In_43    41.300 11.300 20.70 7.34  8.761855 3.417351    24.75224
## s8473_In_44    59.300 22.700 32.00 6.93 12.239055 3.355456    43.50984
## s8473_In_Al_45 44.300 14.700 48.00 5.90  8.736789 4.421779    19.78883
## s8473_In_Al_46 34.000 10.700 36.00 5.67 12.561059 4.462853    29.89532
## s8473_In_Al_47 67.300 24.700 54.00 5.55  9.144922 4.489856    24.91991
## s8473_In_Al_48 51.000 10.000 34.70 5.73  8.756356 4.450651    27.93278
## s8353_49       53.700 20.700 41.30 7.43 13.642539 5.622016    39.42694
## s1903_4        34.700 16.000 22.70 7.31  7.062059 3.501867    37.46422
## s8353_50       48.000  6.700 46.70 7.45 13.219376 5.606359    43.16126
## s8353_51       45.000 15.000 30.00 7.59 13.273470 5.577243    44.00155
## s8353_52       54.000 20.700 47.30 6.96 13.497544 5.583323    45.35175
## s8353_Al_53    44.000  8.000 25.30 5.69 13.251753 3.354965    34.91837
## s8353_Al_54    22.000  5.300 20.00 5.61 12.305034 3.369038    27.37870
## s8353_Al_55    50.700  5.300 38.70 5.62 13.376507 3.348624    26.88678
## s8353_Al_56    33.000 10.000 18.00 5.49 13.561162 3.332240    37.22539
## s8353_In_57    74.700 30.700 57.30 7.07 13.237535 2.727507    44.08099
## s8353_In_58    74.300 42.000 63.30 7.48 13.256106 2.726922    40.29856
## s8353_In_59    84.000 28.000 70.70 6.89 13.124471 2.727272    43.17951
## s1903_Al_5      5.700  1.300  3.30 5.92  7.916694 3.263927    35.22929
## s8353_In_60    81.000 17.300 70.70 7.30 13.590253 2.715956    49.74033
## s8353_In_Al_61 73.000 32.700 54.70 5.64 13.407305 3.110316    37.60749
## s8353_In_Al_62 71.500 41.000 49.00 5.84 14.007154 3.101880    41.67128
## s1903_Al_6      4.075  6.675  4.85 5.64  7.631617 3.250396    27.35935
## s1903_Al_7      2.000  3.000  2.00 5.50  8.199655 3.250767    35.54550
## s1903_Al_8      3.000  4.000  0.00 5.47  8.003643 3.248612    37.85723
## s1903_In_9     57.700 45.300 28.00 7.62  7.481808 4.501045    48.70657
##                Nit15PerPlant  NitSeed NitSeed15 NitSeedPerPlant
## s1903_In_10        1.7568933 28.60887  2.782412       135.46301
## s1903_In_11        1.7731651 24.34507  2.973828        99.08445
## s1903_In_12        2.2158613 30.38750  2.130032       166.21961
## s1903_In_Al_13     1.7213731 39.18761  1.738660       167.72298
## s1903_In_Al_14     1.8027713 33.56791  1.777165       168.67877
## s1903_In_Al_15     1.4552619 40.70551  2.376448       183.58186
## s1903_In_Al_16     1.5763733 33.74961  2.488498       153.89821
## s7307_17           0.7103778 33.49280  1.301300       316.73021
## s7307_18           0.9252696 31.40309  1.379876       288.43742
## s7307_19           0.9128033 37.67156  1.075136       379.54102
## s1903_1            1.1877301 26.41285  2.956314       123.08387
## s7307_20           0.6892961 32.00000  1.500000       220.48000
## s7307_Al_21        1.4579098 30.99782  2.369572       199.00603
## s7307_Al_22        0.9107028 32.49857  2.221652       235.77714
## s7307_Al_23        1.0854736 31.12105  3.006902       183.30301
## s7307_Al_24        1.0270250 27.47089  1.932198       178.83551
## s7307_In_25        0.8069091 32.25249  1.495332       294.30398
## s7307_In_26        0.8047762 33.31538  1.328756       344.64759
## s7307_In_27        0.9315891 34.81787  1.267678       352.00865
## s7307_In_28        0.8290571 30.63483  1.810808       264.99130
## s7307_In_Al_29     1.1221776 29.87509  1.928525       240.64389
## s1903_2            1.2203486 27.54488  2.457658       149.01781
## s7307_In_Al_30     1.3800378 28.31662  2.418461       173.43932
## s7307_In_Al_31     1.1670236 31.12582  2.027969       209.78800
## s7307_In_Al_32     1.2923383 29.87783  2.969308       181.65719
## s8473_33           1.5853077 31.89454  5.003260        73.51692
## s8473_34           1.3923792 31.34906  5.601521        44.67241
## s8473_35           1.3338532 29.18684  4.927035        48.59608
## s8473_36           1.6667885 25.14507  4.886217        54.69053
## s8473_Al_37        1.1299225 34.76650  3.328457        41.89364
## s8473_Al_38        1.0083565 33.08799  4.361988        47.81214
## s8473_Al_39        0.9563698 33.86392  3.857503        47.74812
## s1903_3            1.2858401 33.40278  2.244157       124.25834
## s8473_Al_40        0.9566192 30.36762  4.917908        36.59298
## s8473_In_41        1.2207928 33.98304  2.338680       133.21350
## s8473_In_42        0.8620429 29.70248  4.363844        73.21661
## s8473_In_43        0.8458709 31.52073  4.055988        98.65989
## s8473_In_44        1.4599536 26.51261  5.178503        79.93553
## s8473_In_Al_45     0.8750182 27.82093  5.348780        56.89381
## s8473_In_Al_46     1.3341842 32.03036  6.010785        69.02542
## s8473_In_Al_47     1.1188682 37.66116  5.300549        76.26385
## s8473_In_Al_48     1.2431904 32.61339  5.480025        68.16199
## s8353_49           2.2165887 33.63205  3.856533       138.22774
## s1903_4            1.3119473 24.09251  2.759202        96.97235
## s8353_50           2.4197753 34.11133  3.356879       141.90313
## s8353_51           2.4540736 36.22460  2.300119       183.11536
## s8353_52           2.5321348 36.72984  2.803752       222.21553
## s8353_Al_53        1.1714991 33.67798  2.612349       157.27616
## s8353_Al_54        0.9223989 36.90091  2.008085       132.84329
## s8353_Al_55        0.9003371 33.25431  2.776216        97.60140
## s8353_Al_56        1.2404393 37.97103  1.715371       161.94643
## s8353_In_57        1.2023121 38.50141  1.780533       217.53294
## s8353_In_58        1.0989104 38.64386  1.816454       197.66336
## s8353_In_59        1.1776226 41.03987  1.632877       216.89569
## s1903_Al_5         1.1498583 28.31992  2.915068       108.18209
## s8353_In_60        1.3509254 36.78124  2.059271       249.37682
## s8353_In_Al_61     1.1697118 38.37541  2.433096       182.28317
## s8353_In_Al_62     1.2925932 39.98039  1.928854       195.50412
## s1903_Al_6         0.8892871 34.09451  3.101615       127.85439
## s1903_Al_7         1.1555015 33.89367  2.582560       139.30298
## s1903_Al_8         1.2298345 35.60158  2.291928       135.64204
## s1903_In_9         2.1923047 28.95558  2.186212       173.15434
##                Nit15SeedPerPlant NitBineSeedPerPlant Nit15BineSeedPerPlant
## s1903_In_10             3.769140           175.48263              5.526033
## s1903_In_11             2.946600           139.13759              4.719766
## s1903_In_12             3.540531           216.09490              5.756392
## s1903_In_Al_13          2.916133           228.11144              4.637506
## s1903_In_Al_14          2.997700           234.29187              4.800471
## s1903_In_Al_15          4.362728           235.11547              5.817990
## s1903_In_Al_16          3.829755           211.06939              5.406128
## s7307_17                4.121609           352.03903              4.831986
## s7307_18                3.980078           333.98687              4.905348
## s7307_19                4.080582           424.31257              4.993385
## s1903_1                 3.638745           156.91482              4.826475
## s7307_20                3.307200           254.97547              3.996496
## s7307_Al_21             4.715591           254.07546              6.173501
## s7307_Al_22             5.238149           270.47034              6.148851
## s7307_Al_23             5.511741           225.04324              6.597215
## s7307_Al_24             3.455457           218.55911              4.482482
## s7307_In_25             4.400823           334.92889              5.207732
## s7307_In_26             4.579526           384.43165              5.384302
## s7307_In_27             4.462336           398.04424              5.393925
## s7307_In_28             4.798484           307.20802              5.627541
## s7307_In_Al_29          4.640879           284.88861              5.763056
## s1903_2                 3.662349           183.80684              4.882697
## s7307_In_Al_30          4.194562           227.48239              5.574599
## s7307_In_Al_31          4.254436           255.07464              5.421460
## s7307_In_Al_32          5.393961           231.37485              6.686300
## s8473_33                3.678242           111.54182              5.263550
## s8473_34                2.502334            78.15661              3.894714
## s8473_35                2.394346            80.49633              3.728199
## s8473_36                2.672298            94.51858              4.339086
## s8473_Al_37             1.394412            67.84594              2.524334
## s8473_Al_38             2.085560            70.81161              3.093916
## s8473_Al_39             1.841885            69.71549              2.798255
## s1903_3                 2.788552           161.04580              4.074392
## s8473_Al_40             1.799609            58.51550              2.756228
## s8473_In_41             3.115437           169.03332              4.336230
## s8473_In_42             3.195059            97.95228              4.057102
## s8473_In_43             4.001633           123.41213              4.847504
## s8473_In_44             4.139464           123.44537              5.599418
## s8473_In_Al_45          3.043125            76.68264              3.918143
## s8473_In_Al_46          4.148970            98.92074              5.483154
## s8473_In_Al_47          4.042403           101.18376              5.161271
## s8473_In_Al_48          3.735294            96.09477              4.978484
## s8353_49                5.330799           177.65468              7.547387
## s1903_4                 2.675663           134.43657              3.987610
## s8353_50                4.763517           185.06439              7.183292
## s8353_51                4.211871           227.11692              6.665944
## s8353_52                6.230372           267.56728              8.762507
## s8353_Al_53             4.108602           192.19453              5.280101
## s8353_Al_54             2.667606           160.22199              3.590005
## s8353_Al_55             2.709625           124.48818              3.609962
## s8353_Al_56             2.777982           199.17182              4.018421
## s8353_In_57             3.873246           261.61393              5.075558
## s8353_In_58             3.590463           237.96192              4.689374
## s8353_In_59             3.541640           260.07520              4.719262
## s1903_Al_5              3.153582           143.41138              4.303440
## s8353_In_60             5.135345           299.11715              6.486270
## s8353_In_Al_61          4.435126           219.89067              5.604837
## s8353_In_Al_62          3.770989           237.17540              5.063582
## s1903_Al_6              3.965551           155.21374              4.854838
## s1903_Al_7              3.597583           174.84848              4.753084
## s1903_Al_8              3.108818           173.49927              4.338652
## s1903_In_9              3.785522           221.86091              5.977826
##                  BineAl     BineB   BineCa    BineCo   BineCu    BineFe
## s1903_In_10    136.3636 12.914714 33739.46  4.948454 22.74602 119.12840
## s1903_In_11    130.7978 14.916512 33395.18  4.925788 22.43043 111.79035
## s1903_In_12    153.5817 13.734479 35816.62  5.329513 23.78223 120.54441
## s1903_In_Al_13 184.3023 13.158915 33720.93  6.337209 21.83140 154.27326
## s1903_In_Al_14 160.0000 15.922705 35362.32  6.376812 22.17391 155.56522
## s1903_In_Al_15 170.0000 14.430622 37607.66  6.803828 24.05742 164.69856
## s1903_In_Al_16 163.4615 11.886447 30769.23  5.851648 20.19231 131.51099
## s7307_17       145.8416  8.693069 30891.09  4.574257 15.98020  77.27794
## s7307_18       147.3088  7.913126 31161.47  4.560907 15.15581  75.71707
## s7307_19       119.7812  8.003646 31996.35  4.512306 14.95898  83.23047
## s1903_1        150.0000 10.729783 30473.37  4.822485 20.00000 132.86982
## s7307_20       116.3142  9.546828 33232.63  4.561934 15.46828  86.98807
## s7307_Al_21    157.4056 12.178122 31364.96  5.837367 17.13456 107.07648
## s7307_Al_22    144.0553 11.133641 28755.76  5.529954 16.17512 100.56221
## s7307_Al_23    167.0254 12.504892 31409.00  6.076321 17.87671 146.38943
## s7307_Al_24    167.8503 14.184261 32533.59  6.190019 18.10940 115.94050
## s7307_In_25    112.6074  7.440306 24813.75  4.928367 19.16905 122.88119
## s7307_In_26    106.8293  6.341463 25492.68  4.682927 19.22927 125.41076
## s7307_In_27    115.4291  7.232401 29218.90  5.004822 22.91225  91.25798
## s7307_In_28    122.5646  8.230616 31908.55  5.457256 21.85885  91.45015
## s7307_In_Al_29 168.1010 13.826006 32553.79  6.061740 17.79233 121.71188
## s1903_2        163.0725 11.526718 34351.15  5.238550 21.95611 125.67748
## s7307_In_Al_30 165.5172 13.869732 33908.05  6.293103 17.93103 114.56897
## s7307_In_Al_31 155.9659 12.007576 30965.91  5.937500 17.64205 103.60795
## s7307_In_Al_32 151.7308 11.807692 29711.54  5.769231 16.38462  98.85577
## s8473_33       184.7009 14.131054 29914.53  6.324786 34.26104 117.86325
## s8473_34       154.2373 13.540490 30508.47  6.271186 27.14958 115.73446
## s8473_35       187.0909 13.527273 29727.27  6.272727 26.95055 125.37273
## s8473_36       153.9654 15.113947 29535.10  6.153145 31.04683 122.16044
## s8473_Al_37    198.4230 16.307978 27077.92  6.957328 29.77737 218.65492
## s8473_Al_38    230.6422 17.855179 29697.53  7.314390 31.89734 202.30064
## s8473_Al_39    234.9862 16.220472 26692.91  6.938976 30.11811 201.87992
## s1903_3        152.0270  9.536680 28957.53  4.720077 19.34363 139.19884
## s8473_Al_40    220.0000 16.269336 26724.29  6.960874 30.57325 201.10100
## s8473_In_41    170.0000 21.554702 32533.59  9.472169 38.17664 325.44146
## s8473_In_42    174.6943 21.335842 24412.04  7.422389 38.13559 257.58231
## s8473_In_43    168.6813 18.937729 24120.88  7.252747 37.90909 263.10440
## s8473_In_44    178.6417 12.497704 43526.17 11.652893 37.73929 242.06612
## s8473_In_Al_45 172.1189 18.005753 35666.35  8.082454 31.63950 313.52828
## s8473_In_Al_46 201.0027 18.577940 31996.35  7.711942 30.62899 226.90064
## s8473_In_Al_47 195.0000 19.215311 33301.44  7.952153 31.00478 258.57416
## s8473_In_Al_48 190.5591 18.972477 33577.98  7.954128 31.37615 264.41284
## s8353_49       201.3121 21.744142 61012.18  7.703843 30.36551 130.93721
## s1903_4        146.3908 10.856593 29451.40  4.677575 19.60539 129.26853
## s8353_50       182.1033 26.180812 57564.58  7.278598 29.05904 117.26015
## s8353_51       203.0986 21.796244 61408.45  7.577465 31.26761 150.61972
## s8353_52       245.5535 24.010889 55807.62  7.159710 29.40109 122.96733
## s8353_Al_53    240.3285 30.182482 61587.59  8.622263 27.91971 157.85584
## s8353_Al_54    240.4050 30.356798 61620.06  8.852459 28.87175 166.83703
## s8353_Al_55    261.7261 32.251407 64727.95  9.174484 29.54972 185.37523
## s8353_Al_56    253.6893 31.048544 63786.41  9.000000 28.68932 163.31068
## s8353_In_57    186.2162 22.414414 60810.81  7.108108 30.81081 152.08108
## s8353_In_58    189.1544 23.235294 62867.65  7.334559 31.70956 139.99081
## s8353_In_59    188.5308 22.729858 63412.32  7.450237 31.56398 135.27014
## s1903_Al_5     172.0260 13.921933 30669.14  5.966543 18.76394 130.67844
## s8353_In_60    197.8664 23.265306 64007.42  7.374768 32.00371 152.69944
## s8353_In_Al_61 234.5304 29.263352 61049.72  8.618785 28.17680 161.51934
## s8353_In_Al_62 237.7691 29.432485 60763.21  8.953033 29.23679 169.57926
## s1903_Al_6     160.3989 15.840456 30769.23  5.868946 18.54701 127.26496
## s1903_Al_7     196.1219 14.016620 32963.99  6.204986 19.97230 168.61496
## s1903_Al_8     194.7615 13.826006 30589.34  6.005613 18.99906 172.50702
## s1903_In_9     148.7512 14.690102 32747.46  4.912118 22.17391 134.51434
##                    BineK   BineMg    BineMn    BineMo    BineNi     BineP
## s1903_In_10    12764.761 4133.083  25.33271 18.078725  6.579194  9373.102
## s1903_In_11    12578.850 4063.080  24.74026 17.671614  6.233766  9138.312
## s1903_In_12    13524.355 4355.301  26.87679 19.169054  6.790831  9781.375
## s1903_In_Al_13 12325.581 6104.651  64.53488  4.331395  7.470930 10068.895
## s1903_In_Al_14 12579.710 6289.855  66.66667  4.434783  7.304348 10445.507
## s1903_In_Al_15 13779.904 6717.703  71.48325  4.794258  7.751196 11379.043
## s1903_In_Al_16 11978.022 5659.341  57.69231  4.065934  6.620879  9433.242
## s7307_17       10366.337 2738.614  17.85149  6.534653  5.762376  5970.487
## s7307_18       10368.272 2722.380  17.98867  6.657224  5.807365  5923.024
## s7307_19       10528.715 3664.540  17.36554  6.536007  5.742935  6433.076
## s1903_1        10650.888 3905.325  24.91124 14.378698  6.360947  8738.757
## s7307_20       10453.172 2827.795  17.73414  6.586103  5.740181  6869.881
## s7307_Al_21    11413.359 5488.867  81.60697  2.424976  6.737657  7968.151
## s7307_Al_22    10866.359 5142.857  74.93088  2.305991  6.276498  7613.917
## s7307_Al_23    12064.579 5636.008  81.60470  2.480431  6.986301  8259.393
## s7307_Al_24    11919.386 5671.785  83.78119  2.481766  7.111324  8359.981
## s7307_In_25     9627.507 2510.029  21.74785  5.071633  5.845272  7704.059
## s7307_In_26     9863.415 2616.585  21.30732  5.004878  5.678049  7517.564
## s7307_In_27    10443.587 2811.958  23.98264  5.323047  6.190935  7557.976
## s7307_In_28    10735.586 3966.203  26.89861  5.576541  6.411531  7805.740
## s7307_In_Al_29 11842.844 5612.722  83.91020  2.458372  6.959775  8345.276
## s1903_2        12223.282 4179.389  30.05725 15.629771  6.898855  9285.401
## s7307_In_Al_30 12471.264 5862.069  87.06897  2.520115  6.982759  8487.644
## s7307_In_Al_31 11676.136 5454.545  78.97727  2.394886  6.789773  8135.511
## s7307_In_Al_32 11336.538 5365.385  75.57692  2.339423  6.317308  7856.827
## s8473_33       12770.853 6353.276  25.58405 11.096866  7.008547 15082.550
## s8473_34       12607.110 6384.181  25.48023 11.101695  7.090395 15078.487
## s8473_35       12459.330 6327.273  25.47273 11.086364  7.090909 15369.474
## s8473_36       12880.734 6235.187  24.94075 10.966272  7.110301 15615.688
## s8473_Al_37    13803.340 7569.573  71.52134  5.788497  7.597403 15399.907
## s8473_Al_38    14958.753 8249.313  73.14390  6.186984  8.001833 16728.781
## s8473_Al_39    12962.598 7559.055  66.73228  5.580709  7.647638 15955.807
## s1903_3        10714.286 3822.394  23.68726 14.536680  6.138996  8611.100
## s8473_Al_40    13867.152 7643.312  67.42493  5.896269  7.561419 15869.973
## s8473_In_41    14049.904 7370.441  60.46065 14.596929  8.809981 16392.610
## s8473_In_42    13151.458 5785.513  36.40640 12.558796  7.168391 18268.213
## s8473_In_43    12967.033 7741.758  37.08791 12.609890  7.390110 17270.247
## s8473_In_44    15867.769 8504.132  66.22590 17.548209 10.468320 20974.380
## s8473_In_Al_45 14586.895 8801.534  73.63375  5.436242  8.916587 19668.661
## s8473_In_Al_46 14293.785 8641.750  69.73564  5.442115  8.778487 19812.712
## s8473_In_Al_47 14372.727 8842.105  71.19617  5.483254  9.071770 19537.364
## s8473_In_Al_48 14603.464 8944.954  72.11009  5.614679  8.669725 19481.404
## s8353_49       12670.103 7085.286  55.95127 28.059981  9.194002 14321.556
## s1903_4        11231.954 3811.357  23.30125 14.639076  6.150144  8326.372
## s8353_50       11602.399 6725.092  52.85978 26.429889  8.745387 13598.801
## s8353_51       11701.408 7070.423  56.33803 27.971831  9.380282 14461.127
## s8353_52       13562.613 6588.022  52.54083 26.188748  8.847550 13621.688
## s8353_Al_53    12235.401 8759.124 116.87956  6.240876  9.990876 14134.215
## s8353_Al_54    12815.815 8881.389 117.45419  6.422372 10.154291 14504.436
## s8353_Al_55    12861.163 9315.197 126.64165  6.613508 10.469043 15207.411
## s8353_Al_56    12844.660 9203.883 121.45631  6.582524 10.194175 15010.777
## s8353_In_57    12297.297 6405.405  33.51351 24.459459  9.000000 15010.000
## s8353_In_58    12601.103 6617.647  35.01838 25.588235  9.071691 15396.232
## s8353_In_59    12739.336 6625.592  33.83886 25.194313  9.355450 15593.460
## s1903_Al_5     11180.297 5743.494  63.28996  3.986989  6.914498  8207.342
## s8353_In_60    12690.167 6679.035  34.78664 25.547310  9.239332 15650.371
## s8353_In_Al_61 13701.657 9171.271  91.16022 10.331492 10.165746 14098.619
## s8353_In_Al_62 13561.644 9275.930  92.46575 10.332681 10.538160 14306.360
## s1903_Al_6     11139.601 5783.476  63.24786  3.931624  6.666667  8301.140
## s1903_Al_7     11745.152 6038.781  65.92798  4.016620  7.146814  8846.814
## s1903_Al_8     11085.126 5724.977  64.54630  3.928906  7.296539  8289.149
## s1903_In_9     12321.924 4024.052  24.92137 17.456059  6.244218  9001.943
##                   BineS   BineZn   SeedAl    SeedB    SeedCa    SeedCo   SeedCu
## s1903_In_10    1450.797 27.18838 22.41445 3.773764 1015.2091 0.7129278 47.90875
## s1903_In_11    1408.163 25.57514 26.85468 4.608031 1041.1090 0.8604207 50.19120
## s1903_In_12    1530.086 28.51003 11.92090 6.760829  765.5367 0.5932203 33.89831
## s1903_In_Al_13 1334.302 47.67442 22.99720 4.295051  885.1541 0.6442577 40.61625
## s1903_In_Al_14 1344.928 47.24638 25.61254 3.865147  746.4387 0.6552707 28.77493
## s1903_In_Al_15 1455.502 51.38756 19.91573 2.743446        NA 0.5617978 44.38202
## s1903_In_Al_16 1241.758 45.05495 33.39844 4.658203 1230.4688 0.7031250 45.99609
## s7307_17       1214.851 12.44554 19.65000 2.490000  999.0000 0.8100000 34.50000
## s7307_18       1220.963 11.16147 23.16000 3.770000 1242.0000 0.9600000 36.00000
## s7307_19       1192.343 15.12306 20.46000 3.180000 1065.0000 0.5700000 26.22000
## s1903_1        1553.254 18.57988 19.32302 2.659574 1029.9807 0.8123791 52.22437
## s7307_20       1229.607 12.65861 21.42000 3.800000 1236.0000 1.2300000 47.10000
## s7307_Al_21    1132.623 42.11036 17.55000 3.080000  993.0000 1.0420000 21.84000
## s7307_Al_22    1064.516 38.43318 25.26000 5.740000 2001.0000 1.3980000 51.90000
## s7307_Al_23    1180.039 45.20548 31.50000 6.610000 1664.0000 1.2220000 41.40000
## s7307_Al_24    1183.301 46.64107 21.57000 4.290000 1374.0000 1.5600000 52.50000
## s7307_In_25     991.404 15.38682 19.20000 3.590000 1098.0000 1.0200000 35.10000
## s7307_In_26    1006.829 15.33659 23.67000 4.890000 1350.0000 1.4700000 45.30000
## s7307_In_27    1090.646 25.19769 23.25000 4.340000 1158.0000 1.2300000 44.70000
## s7307_In_28    1151.093 16.96819 22.71000 3.430000 1203.0000 1.3200000 35.70000
## s7307_In_Al_29 1181.478 43.21796 20.37000 4.300000 1278.0000 1.0200000 34.50000
## s1903_2        1657.443 20.20992 29.66851 1.878453  875.6906 0.7734807 34.80663
## s7307_In_Al_30 1221.264 44.82759 24.57000 3.210000 1617.0000 1.2000000 31.50000
## s7307_In_Al_31 1144.886 42.61364 26.97000 4.860000 1866.0000 1.2300000 39.30000
## s7307_In_Al_32 1113.462 41.25000 33.30000 5.230000 2301.0000 1.8900000 45.30000
## s8473_33       1908.832 40.45584 33.81038 5.397412 1186.6913 0.6654344 50.07394
## s8473_34       1901.130 40.11299 44.49704 2.257002 1131.7957 0.9884679 53.87150
## s8473_35       1865.455 42.27273 37.14286 2.191358  967.5926 0.5555556 48.61111
## s8473_36       1881.495 41.84139 35.18053 2.319109 1218.9239 0.6679035 49.25788
## s8473_Al_37    1564.007 56.49351 44.08503 2.576029 1046.5116 0.1610018 59.57066
## s8473_Al_38    1693.859 59.12007 49.42339 4.654832 1236.6864 0.9467456 54.91124
## s8473_Al_39    1535.433 55.21654 40.04630 2.912088  873.6264 0.3296703 62.63736
## s1903_3        1476.834 17.77992 15.34091 1.846591  906.2500 0.6250000 43.75000
## s8473_Al_40    1596.906 58.14377 49.59184 3.930926 1229.1994 0.2354788 46.01256
## s8473_In_41    2035.509 80.90211 26.84944 4.488848 1198.8848 2.5650558 48.51301
## s8473_In_42    1941.298 69.70837 36.41250 4.675000 1241.2500 1.9875000 69.00000
## s8473_In_43    2292.308 68.95604 26.82000 3.100000  942.0000 1.0720000 53.40000
## s8473_In_44    2498.623 96.14325 28.85294 2.568627  973.5294 2.0558824 47.35294
## s8473_In_Al_45 1507.191 61.26558 36.00000 6.640000 2270.0000 1.8600000 50.40000
## s8473_In_Al_46 1476.755 60.16408 24.48000 3.890000 1602.0000 1.6800000 70.80000
## s8473_In_Al_47 1475.598 61.14833 25.95000 4.640000 1989.0000 1.7400000 57.00000
## s8473_In_Al_48 1516.514 63.57798 35.70000 6.490000 1948.0000 2.3400000 75.00000
## s8353_49       2119.963 44.70478 23.80000 5.050000 2150.0000 1.1237000 43.80000
## s1903_4        1489.894 18.33494 25.28046 3.056093  951.6441 0.5512573 42.35977
## s8353_50       2017.528 40.12915 22.74000 2.530000 1809.0000 0.9300000 36.30000
## s8353_51       2140.845 43.09859 21.21000 1.190000 1173.0000 0.6300000 41.10000
## s8353_52       2025.408 40.29038 23.90000 4.440000 2403.0000 1.2400000 48.80000
## s8353_Al_53    2074.818 59.39781 20.64000 2.650000 1578.0000 1.1100000 45.60000
## s8353_Al_54    2088.717 60.17358 24.75000 2.720000 1905.0000 1.1100000 52.50000
## s8353_Al_55    2164.165 64.44653 23.16000 2.310000 1671.0000 1.2000000 64.80000
## s8353_Al_56    2164.078 61.16505 20.28000 3.770000 1578.0000 1.2900000 47.10000
## s8353_In_57    2370.270 31.62162 25.50000 4.060000 2271.0000 1.8900000 72.00000
## s8353_In_58    2440.257 31.15809 19.30000 2.830000 1962.0000 1.7700000 78.90000
## s8353_In_59    2425.592 31.27962 23.55000 2.520000 1371.0000 1.0800000 52.80000
## s1903_Al_5     1285.316 43.21561 26.54762 2.857143  723.2143 0.4761905 41.66667
## s8353_In_60    2457.328 31.72542 15.86000 2.000000 1965.0000 1.2300000 62.40000
## s8353_In_Al_61 2005.525 49.72376 24.45000 4.090000 1992.0000 1.5300000 51.60000
## s8353_In_Al_62 2048.924 49.02153 16.79000 4.490000 2148.0000 2.1900000 84.00000
## s1903_Al_6     1270.655 42.16524 26.46724 2.203229  914.5299 0.3133903 35.89744
## s1903_Al_7     1321.330 45.98338 21.67300 3.250951  764.2586 0.5988593 36.21673
## s1903_Al_8     1246.024 42.93732 23.43564 1.960396  748.5149 0.3861386 41.28713
## s1903_In_9     1407.031 26.03145 21.82230 3.771532  834.9955 0.4895739 36.99003
##                  SeedFe     SeedK   SeedMg    SeedMn    SeedMo    SeedNi
## s1903_In_10    214.3631  9524.715 1317.490 14.572243  5.731939 2.1387833
## s1903_In_11    274.9618 10783.939 1253.346 17.409178 11.214149 2.4665392
## s1903_In_12    136.9209  8474.576 1257.062 11.412429  6.158192 0.9322034
## s1903_In_Al_13 173.1913  8487.395 1246.499 14.817927  3.249300 0.7563025
## s1903_In_Al_14 159.1433  9401.709 1216.524 12.735043  3.418803 1.2250712
## s1903_In_Al_15 146.8463  9213.483 1151.685 13.117978  2.741573 0.7303371
## s1903_In_Al_16 135.6659  9785.156 1335.938 13.330078  3.427734 0.8496094
## s7307_17       121.7100 10590.000 1572.000 11.280000  9.450000 1.6800000
## s7307_18       143.6100 11730.000 1743.000 12.300000 11.220000 2.1300000
## s7307_19       110.8100  9900.000 1455.000  8.940000  8.880000 1.2600000
## s1903_1        163.5493 10444.874 1389.749 16.827853  5.483559 1.4216634
## s7307_20        89.9100 14700.000 2061.000 14.550000 12.720000 1.6800000
## s7307_Al_21    134.0100  8550.000 1206.000 13.980000  2.637000 0.8100000
## s7307_Al_22    223.4100 17730.000 1538.000 25.170000  6.570000 3.0000000
## s7307_Al_23    259.4100 16500.000 1622.000 27.000000  4.230000 2.7000000
## s7307_Al_24    147.5100 17070.000 2400.000 25.050000  6.150000 2.4900000
## s7307_In_25    133.7100 11940.000 1782.000 13.470000 10.110000 5.4500000
## s7307_In_26    218.6100 15870.000 2121.000 16.350000 13.050000 6.5400000
## s7307_In_27    137.9100 14340.000 2028.000 14.580000 13.770000 3.6900000
## s7307_In_28    196.7100 12570.000 1971.000 15.360000  9.840000 2.5500000
## s7307_In_Al_29 104.0100 12600.000 1761.000 17.850000  5.520000 1.8900000
## s1903_2        131.6851  8646.409 1223.757 12.237569  5.580110 1.9889503
## s7307_In_Al_30 108.2100 11550.000 1800.000 16.980000  2.934000 1.8600000
## s7307_In_Al_31 158.9100 14070.000 1983.000 21.450000  4.380000 2.3100000
## s7307_In_Al_32 215.9100 16320.000 2409.000 25.980000  4.320000 5.2800000
## s8473_33       143.4677 10147.874 1513.863 10.092421 14.029575 0.9426987
## s8473_34       157.1269 11120.264 1364.086 10.477759 17.248764 1.1367381
## s8473_35       131.6296  9444.444 1375.000  8.703704 15.416667 0.6944444
## s8473_36       102.8015 10575.139 1474.954 11.354360 16.864564 1.3914657
## s8473_Al_37    134.5438 11484.794 1626.118 11.967800  7.137746 6.1359571
## s8473_Al_38    137.6923 11420.118 1834.320 13.491124  5.372781 3.9822485
## s8473_Al_39    137.7473 11538.462 1642.857 13.241758  7.087912 6.6483516
## s1903_3        130.8807  9034.091 1332.386 12.045455  7.357955 0.7954545
## s8473_Al_40    100.6436 10737.834 1365.777 15.588697  9.324961 5.1899529
## s8473_In_41    158.2807 11431.227 1605.948 23.401487 16.328996 1.6171004
## s8473_In_42    142.3875 15787.500 1841.250 26.587500 20.437500 1.7625000
## s8473_In_43    153.7100 11400.000 1386.000 12.930000 16.740000 0.9000000
## s8473_In_44    139.0294 11382.353 1370.588 20.558824 15.529412 2.0588235
## s8473_In_Al_45 145.1100 13830.000 2259.000 14.340000  8.970000 6.8300000
## s8473_In_Al_46 250.7100 16080.000 2076.000 16.560000  6.450000 5.3420000
## s8473_In_Al_47 242.6100 15810.000 2214.000 18.660000  4.830000 7.8200000
## s8473_In_Al_48 178.4100 20310.000 2823.000 20.790000 13.980000 5.3480000
## s8353_49       137.3100 10830.000 1540.000 25.350000 12.230000 3.2100000
## s1903_4        149.3327  8994.197 1235.977 10.996132  5.077369 1.0735010
## s8353_50       129.5100  8100.000 1560.000 19.080000 10.949000 1.4100000
## s8353_51       100.7100  7890.000 1452.000 11.880000  6.750000 1.2900000
## s8353_52       175.1100 10890.000 1955.000 23.160000 11.560000 3.3600000
## s8353_Al_53    222.2100  9450.000 1797.000 20.340000  4.260000 2.3400000
## s8353_Al_54    179.0100  9540.000 1824.000 19.830000  4.890000 1.8900000
## s8353_Al_55    216.8100 11160.000 1941.000 22.140000  5.340000 2.7000000
## s8353_Al_56    247.7100 10620.000 1917.000 23.700000  3.270000 3.1800000
## s8353_In_57    180.5100 15120.000 2631.000 22.200000 12.780000 2.4900000
## s8353_In_58    232.4100 14640.000 2487.000 20.580000 12.480000 2.4900000
## s8353_In_59    152.9100 10260.000 1920.000 17.220000  8.580000 1.7400000
## s1903_Al_5     133.6667  8809.524 1122.024 11.011905  4.523810 1.8452381
## s8353_In_60    238.1100 10290.000 1929.000 15.210000  8.910000 1.8000000
## s8353_In_Al_61 341.3100 12270.000 2172.000 25.920000  4.470000 3.0600000
## s8353_In_Al_62 280.3100 16470.000 2943.000 27.810000 11.460000 3.4500000
## s1903_Al_6     185.8462  8319.088 1096.866 12.621083  2.686610 0.8831909
## s1903_Al_7     158.6464  9781.369 1249.049 13.716730  2.207224 0.6558935
## s1903_Al_8     110.1149  8792.079 1161.386 13.366337  3.207921 0.4455446
## s1903_In_9     110.3445  8295.558 1188.577  9.383500  6.174071 1.0063463
##                   SeedP     SeedS   SeedZn SoilAl  SoilB SoilCa   SoilCo SoilCu
## s1903_In_10    41189.26  832.6996 66.73004   2.53 0.4880  206.0 0.054000 0.1530
## s1903_In_11    42859.56  814.5315 67.22753   2.66 0.4770  185.0 0.048000 0.1420
## s1903_In_12    28937.01  946.3277 55.19774   3.17 0.4650  251.0 0.064000 0.1590
## s1903_In_Al_13 36536.97  960.7843 43.13725   5.04 0.3970  253.0 0.111000 0.1830
## s1903_In_Al_14 24825.36  874.6439 48.71795   3.45 0.5770  228.0 0.112000 0.1930
## s1903_In_Al_15 40853.09  859.5506 42.13483   4.65 0.3800  193.0 0.097000 0.1660
## s1903_In_Al_16 42315.53  855.4688 37.50000   5.44 0.4990  195.0 0.108000 0.1650
## s7307_17       33431.10 1125.0000 33.30000   3.64 0.4270  203.0 0.067000 0.1820
## s7307_18       34331.10 1164.0000 32.40000   3.42 0.4340  209.0 0.072000 0.1780
## s7307_19       25541.10 1059.0000 34.20000   3.98 0.4380  208.0 0.073000 0.1820
## s1903_1        41906.29  855.8994 36.55706   3.67 0.6010  232.0 0.059000 0.1850
## s7307_20       45731.10 1488.0000 42.30000   4.01 0.4510  153.0 0.071000 0.1810
## s7307_Al_21    20531.10  771.0000 39.00000   7.43 0.5170  175.2 0.047000 0.1770
## s7307_Al_22    49331.10 1428.0000 77.70000   6.87 0.5200  191.3 0.045000 0.1690
## s7307_Al_23    38231.10 1317.0000 86.40000   7.13 0.5450  197.9 0.046000 0.1710
## s7307_Al_24    50231.10 1449.0000 77.70000   6.02 0.5090  216.7 0.045000 0.1700
## s7307_In_25    34331.10 1167.0000 36.60000   3.82 0.4610  220.0 0.072000 0.1810
## s7307_In_26    43031.10 1584.0000 51.60000   4.28 0.5150  206.0 0.089000 0.2410
## s7307_In_27    44231.10 1521.0000 41.70000   3.77 0.4640  137.0 0.066000 0.1620
## s7307_In_28    34631.10 1212.0000 53.40000   3.68 0.4660  195.0 0.069000 0.1790
## s7307_In_Al_29 33431.10 1146.0000 51.60000   5.90 0.6700  206.0 0.106000 0.2000
## s1903_2        29954.97  784.5304 46.13260   3.96 0.5130  189.0 0.048000 0.1510
## s7307_In_Al_30 30731.10  942.0000 54.90000   4.27 0.6580  196.0 0.098000 0.1930
## s7307_In_Al_31 37631.10 1290.0000 62.70000   4.76 0.6890  214.0 0.107000 0.2030
## s7307_In_Al_32 41831.10 1272.0000 84.60000   5.63 0.7030  197.0 0.099000 0.1900
## s8473_33       48153.60  981.5157 46.08133   3.94 0.4990  184.0 0.067000 0.1550
## s8473_34       51616.31 1013.1796 37.11697   4.42 0.4830  162.0 0.062000 0.1500
## s8473_35       46961.57  888.8889 36.75926   3.87 0.4690  172.0 0.066000 0.1500
## s8473_36       47664.38 1001.8553 40.35250   4.00 0.4600  176.0 0.067000 0.1620
## s8473_Al_37    58195.17  976.7442 52.21825   5.83 0.5720  199.0 0.090000 0.1490
## s8473_Al_38    53513.02  976.3314 59.05325   6.87 0.5810  228.0 0.100000 0.1650
## s8473_Al_39    61778.57  945.0549 65.38462   5.98 0.5380  213.0 0.096000 0.1590
## s1903_3        36487.78  894.8864 33.52273   3.46 0.5080  212.0 0.055000 0.1670
## s8473_Al_40    47301.57  932.4961 46.81319   7.16 0.3560  226.0 0.108000 0.1710
## s8473_In_41    44452.70 1226.7658 80.01859   3.13 0.5220  139.0 0.108100 0.1910
## s8473_In_42    66538.88 1353.7500 54.00000   5.23 0.6210  190.0 0.096000 0.2190
## s8473_In_43    52631.10  984.0000 55.80000   3.93 0.5610  106.0 0.098060 0.1550
## s8473_In_44    47775.59 1091.1765 55.88235   5.02 0.5540  130.0 0.099065 0.1330
## s8473_In_Al_45 48431.10 1097.6500 33.60000   3.84 0.4900  265.0 0.087000 0.2070
## s8473_In_Al_46 66431.10 1164.0000 60.90000   3.93 0.4690  248.0 0.081000 0.1870
## s8473_In_Al_47 56231.10 1122.0000 56.40000   4.62 0.7270  253.0 0.082000 0.2590
## s8473_In_Al_48 72731.10 1449.0000 54.30000   4.25 0.4890  262.0 0.084000 0.1940
## s8353_49       61031.10 1257.0000 41.20000   4.59 0.5412  207.0 0.069000 0.1232
## s1903_4        36973.98  783.3656 34.81625   3.46 0.4870  193.0 0.050000 0.1520
## s8353_50       37631.10  918.0000 53.70000   2.65 0.5340  104.0 0.058000 0.1200
## s8353_51       43631.10  945.0000 33.60000   3.22 0.6810  131.0 0.072000 0.1610
## s8353_52       51631.10 1028.0000 56.20000   3.15 0.3970  160.0 0.058000 0.1360
## s8353_Al_53    46331.10 1077.0000 55.80000   5.47 0.4050  150.5 0.031000 0.0990
## s8353_Al_54    54131.10 1107.0000 59.10000   7.35 0.3900  136.6 0.026000 0.0760
## s8353_Al_55    67631.10 1227.0000 80.40000   6.85 0.5440  148.3 0.034000 0.1370
## s8353_Al_56    47231.10 1194.0000 66.30000   7.57 0.4480  145.9 0.031000 0.0850
## s8353_In_57    73631.10 1704.0000 63.60000   3.47 0.3770  158.0 0.057000 0.1340
## s8353_In_58    82931.10 1593.0000 56.40000   3.05 0.4140  137.0 0.058000 0.1310
## s8353_In_59    64431.10 1236.0000 51.30000   3.45 0.3710  157.0 0.058000 0.1370
## s1903_Al_5     34356.25  764.8810 38.69048   6.07 0.6390  147.0 0.058000 0.1310
## s8353_In_60    61631.10 1218.0000 53.70000   4.93 0.4650  153.0 0.055000 0.1400
## s8353_In_Al_61 52031.10 1329.0000 69.90000   3.76 0.5020  123.0 0.060000 0.1780
## s8353_In_Al_62 86231.10 1839.0000 87.30000   5.58 0.4870  136.2 0.028000 0.0870
## s1903_Al_6     30608.83  720.7977 36.46724   7.25 0.8950  186.0 0.089000 0.1840
## s1903_Al_7     32634.13  801.3308 38.21293   6.89 0.7710  175.0 0.086000 0.1760
## s1903_Al_8     37258.51  796.0396 38.31683   4.88 0.8220  178.0 0.089000 0.1870
## s1903_In_9     33029.10  805.0771 58.28649   3.14 0.5230  307.0 0.073000 0.1900
##                SoilFe SoilK SoilMg SoilMn  SoilMo SoilNi SoilP SoilS  SoilZn
## s1903_In_10      2.35 25.80  258.0  0.067 0.39400 0.0770  41.5 12.80 0.03500
## s1903_In_11      1.91 18.20  182.0  0.053 0.34500 0.0660  37.0 10.40 0.03200
## s1903_In_12      1.90 22.80  228.0  0.053 0.39600 0.0820  46.0 17.60 0.02800
## s1903_In_Al_13   3.99 26.30  263.0  0.940 0.32200 0.1400  53.6 22.10 0.02400
## s1903_In_Al_14   4.91 25.10  251.0  0.805 0.36800 0.1460  58.1 20.70 0.01800
## s1903_In_Al_15   4.79 24.00  240.0  0.644 0.31000 0.1290  48.5 18.40 0.02700
## s1903_In_Al_16   3.49 25.60  256.0  1.090 0.29500 0.1320  50.8 17.70 0.01200
## s7307_17         1.83 18.40  184.0  0.063 0.33400 0.0920  43.3 15.70 0.02700
## s7307_18         1.64 19.80  198.0  0.044 0.35500 0.0960  44.5 18.60 0.03200
## s7307_19         1.99 19.60  196.0  0.063 0.35000 0.1000  46.3 17.20 0.04800
## s1903_1          4.28 31.90  319.0  0.089 0.35900 0.0790  40.6 14.20 0.05500
## s7307_20         2.10 19.70  197.0  0.060 0.35100 0.0980  45.8 17.20 0.04200
## s7307_Al_21      4.08 17.70  177.0  0.094 0.12600 0.0730  29.7  9.08 0.04600
## s7307_Al_22      3.24 17.80  178.0  0.093 0.13500 0.0570  30.2 10.00 0.03800
## s7307_Al_23      3.93 17.90  179.0  0.095 0.13200 0.0600  29.1  9.37 0.03900
## s7307_Al_24      3.26 17.80  178.0  0.091 0.12900 0.0630  28.9  9.56 0.03900
## s7307_In_25      2.32 19.10  191.0  0.068 0.34700 0.1020  48.1 15.10 0.05100
## s7307_In_26      2.31 27.90  279.0  0.068 0.42900 0.1240  55.7 23.30 0.07700
## s7307_In_27      2.20 16.10  161.0  0.057 0.29700 0.0930  43.6 12.10 0.03600
## s7307_In_28      2.16 18.80  188.0  0.062 0.41200 0.0950  42.4 14.90 0.05100
## s7307_In_Al_29   3.21 22.10  221.0  1.960 0.28200 0.1260  49.6 19.20 0.03000
## s1903_2          2.24 21.70  217.0  0.056 0.32500 0.0620  39.5 11.10 0.05200
## s7307_In_Al_30   2.47 22.20  222.0  1.410 0.27800 0.1210  49.2 19.00 0.04100
## s7307_In_Al_31   3.06 23.00  230.0  1.940 0.29100 0.1280  51.8 20.10 0.04800
## s7307_In_Al_32   2.63 21.80  218.0  1.350 0.28800 0.1210  49.5 18.10 0.03000
## s8473_33         2.06 26.60  266.0  0.072 0.36900 0.0930  43.3 17.60 0.04400
## s8473_34         2.37 33.40  334.0  0.095 0.37800 0.0850  42.8 15.00 0.05940
## s8473_35         2.25 29.10  291.0  0.071 0.37600 0.0930  42.7 14.70 0.03600
## s8473_36         2.58 30.80  308.0  0.089 0.38000 0.0940  46.6 16.00 0.06400
## s8473_Al_37      5.14 34.00  340.0  0.366 0.16200 0.1110  39.1 15.00 0.03900
## s8473_Al_38      5.15 37.70  377.0  0.410 0.17700 0.1200  44.2 16.70 0.06000
## s8473_Al_39      4.58 35.20  352.0  0.392 0.17200 0.1190  43.5 16.20 0.06900
## s1903_3          2.38 26.30  263.0  0.065 0.35100 0.0740  42.8 12.80 0.04700
## s8473_Al_40      6.87 37.70  377.0  0.420 0.20200 0.1330  45.1 17.00 0.05080
## s8473_In_41      2.13 35.60  356.0  0.132 0.18000 0.1050  72.2 12.80 0.07900
## s8473_In_42      2.46 41.60  416.0  0.135 0.20000 0.1220  78.1 15.00 0.11570
## s8473_In_43      2.08 27.80  278.0  0.083 0.15000 0.1078  55.9 19.67 0.11700
## s8473_In_44      2.20 36.80  368.0  0.109 0.16200 0.1083  66.7 17.20 0.07900
## s8473_In_Al_45   1.79 31.20  312.0  0.890 0.44300 0.1180  65.8 17.60 0.04600
## s8473_In_Al_46   1.72 33.60  336.0  0.878 0.43200 0.1110  54.3 16.90 0.04900
## s8473_In_Al_47   2.66 31.70  317.0  0.914 0.42700 0.1150  89.7 17.10 0.07300
## s8473_In_Al_48   2.34 33.10  331.0  0.899 0.43800 0.1150  56.6 16.90 0.05900
## s8353_49         2.13 21.90  219.0  0.068 0.18600 0.1250  56.8 14.60 0.03151
## s1903_4          2.02 21.50  215.0  0.059 0.33100 0.0660  41.3 11.30 0.05200
## s8353_50         1.74 23.16  231.6  0.064 0.17300 0.0750  31.4 10.80 0.04100
## s8353_51         1.23 18.05  210.5  0.053 0.16919 0.0980  44.3 17.00 0.04800
## s8353_52         1.64 20.00  200.0  0.053 0.26309 0.0810  38.8 13.50 0.04800
## s8353_Al_53      3.27 18.20  182.0  0.100 0.13000 0.0470  25.0  6.04 0.07400
## s8353_Al_54      2.46 18.80  188.0  0.062 0.11500 0.0430  21.0  7.16 0.05700
## s8353_Al_55      2.48 26.00  260.0  0.158 0.13500 0.0520  23.6  7.69 0.07900
## s8353_Al_56      2.38 20.00  200.0  0.089 0.12200 0.0420  24.8  6.03 0.05100
## s8353_In_57      1.72 22.40  224.0  0.045 0.34100 0.0830  38.4 13.10 0.05500
## s8353_In_58      1.57 22.00  220.0  0.051 0.31300 0.0790  36.0 11.50 0.04200
## s8353_In_59      1.51 23.40  234.0  0.052 0.33600 0.0870  41.8 13.30 0.06700
## s1903_Al_5       1.87 26.60  266.0  0.107 0.17000 0.0680  34.6 12.80 0.03000
## s8353_In_60      1.59 23.10  231.0  0.055 0.32900 0.0800  38.7 12.40 0.09106
## s8353_In_Al_61   2.60 30.00  300.0  0.419 0.12600 0.0980  34.2 21.30 0.07660
## s8353_In_Al_62   3.65 18.90  189.0  0.149 0.18000 0.0460  19.7 25.81 0.08500
## s1903_Al_6       2.13 35.50  355.0  0.066 0.25800 0.1060  43.3 15.80 0.04400
## s1903_Al_7       1.93 31.20  312.0  0.094 0.22400 0.1050  42.4 15.70 0.05000
## s1903_Al_8       2.41 32.80  328.0  0.103 0.22700 0.1180  42.9 14.90 0.07800
## s1903_In_9       1.92 24.50  245.0  0.054 0.41500 0.0970  51.7 23.00 0.04400
##                BinePerPlantAl BinePerPlantB BinePerPLantCa BinePerPlantCo
## s1903_In_10          737.0455      69.80403      182.36176       26.74639
## s1903_In_11          680.8024      77.64045      173.82189       25.63873
## s1903_In_12          990.6017      88.58739      231.01719       34.37536
## s1903_In_Al_13      1194.2791      85.26977      218.51163       41.06512
## s1903_In_Al_14      1004.8000      99.99459      222.07536       40.04638
## s1903_In_Al_15       851.7000      72.29742      188.41435       34.08718
## s1903_In_Al_16       936.6346      68.10934      176.30769       33.52995
## s7307_17             799.6980      47.66700      169.38614       25.08218
## s7307_18            1081.2465      58.08234      228.72521       33.47705
## s7307_19             821.6992      54.90501      219.49499       30.95442
## s1903_1              660.7500      47.26469      134.23521       21.24305
## s7307_20             610.6495      50.12085      174.47130       23.95015
## s7307_Al_21         1156.1442      89.44831      230.37561       42.87546
## s7307_Al_22          717.3954      55.44553      143.20369       27.53917
## s7307_Al_23          960.3963      71.90313      180.60176       34.93885
## s7307_Al_24          978.5672      82.69424      189.67083       36.08781
## s7307_In_25          856.9427      56.62073      188.83266       37.50487
## s7307_In_26          800.1512      47.49756      190.94020       35.07512
## s7307_In_27          936.1302      58.65477      236.96528       40.58910
## s7307_In_28          851.2112      57.16163      221.60487       37.90065
## s7307_In_Al_29      1053.9935      86.68906      204.11225       38.00711
## s1903_2              856.1307      60.51527      180.34351       27.50239
## s7307_In_Al_30      1207.4483     101.17969      247.35920       45.90819
## s7307_In_Al_31      1019.2372      78.46951      202.36222       38.80156
## s7307_In_Al_32      1074.2538      83.59846      210.35769       40.84615
## s8473_33             543.0205      41.54530       87.94872       18.59487
## s8473_34             424.9237      37.30405       84.05085       17.27712
## s8473_35             501.4036      36.25309       79.66909       16.81091
## s8473_36             479.6021      47.07995       92.00182       19.16705
## s8473_Al_37          513.9156      42.23766       70.13182       18.01948
## s8473_Al_38          520.0982      40.26343       66.96792       16.49395
## s8473_Al_39          479.3719      33.08976       54.45354       14.15551
## s1903_3              788.2601      49.44768      150.14479       24.47360
## s8473_Al_40          465.3000      34.40965       56.52188       14.72225
## s8473_In_41          581.4000      73.71708      111.26488       32.39482
## s8473_In_42          491.7643      60.06040       68.71990       20.89403
## s8473_In_43          476.5247      53.49908       68.14148       20.48901
## s8473_In_44          635.0714      44.42934      154.73554       41.42603
## s8473_In_Al_45       389.8493      40.78303       80.78428       18.30676
## s8473_In_Al_46       478.3865      44.21550       76.15132       18.35442
## s8473_In_Al_47       531.3750      52.36172       90.74641       21.66962
## s8473_In_Al_48       607.8836      60.52220      107.11376       25.37367
## s8353_49             581.7919      62.84057      176.32521       22.26410
## s1903_4              776.6030      57.59423      156.23965       24.81453
## s8353_50             594.5673      85.48035      187.94834       23.76462
## s8353_51             673.2718      72.25455      203.56901       25.11930
## s8353_52             825.0599      80.67659      187.51361       24.05662
## s8353_Al_53          633.2655      79.53084      162.28330       22.71966
## s8353_Al_54          534.9012      67.54388      137.10463       19.69672
## s8353_Al_55          526.0694      64.82533      130.10319       18.44071
## s8353_Al_56          696.3772      85.22825      175.09369       24.70500
## s8353_In_57          620.1000      74.64000      202.50000       23.67000
## s8353_In_58          575.0294      70.63529      191.11765       22.29706
## s8353_In_59          620.2664      74.78123      208.62654       24.51128
## s1903_Al_5           765.5158      61.95260      136.47770       26.55112
## s8353_In_60          724.1911      85.15102      234.26716       26.99165
## s8353_In_Al_61       657.8577      82.08370      171.24448       24.17569
## s8353_In_Al_62       707.3630      87.56164      180.77055       26.63527
## s1903_Al_6           575.0299      56.78803      110.30769       21.04017
## s1903_Al_7           850.1884      60.76205      142.89889       26.89861
## s1903_Al_8           921.2217      65.39701      144.68756       28.40655
## s1903_In_9           968.3700      95.63256      213.18594       31.97789
##                BinePerPlantCu BinePerPlantFe BinePerPlantK BinePerPlantMg
## s1903_In_10         122.94222       643.8890      68.99353       22.33932
## s1903_In_11         116.75037       581.8688      65.47291       21.14833
## s1903_In_12         153.39542       777.5115      87.23209       28.09169
## s1903_In_Al_13      141.46744       999.6907      79.86977       39.55814
## s1903_In_Al_14      139.25217       976.9496      79.00058       39.50029
## s1903_In_Al_15      120.52766       825.1398      69.03732       33.65569
## s1903_In_Al_16      115.70192       753.5580      68.63407       32.42802
## s7307_17             87.62475       423.7407      56.84208       15.01673
## s7307_18            111.24363       555.7633      76.10312       19.98227
## s7307_19            102.61860       570.9610      72.22698       25.13874
## s1903_1              88.10000       585.2916      46.91716       17.20296
## s7307_20             81.20846       456.6874      54.87915       14.84592
## s7307_Al_21         125.85334       786.4767      83.83112       40.31573
## s7307_Al_22          80.55207       500.7998      54.11447       25.61143
## s7307_Al_23         102.79110       841.7392      69.37133       32.40705
## s7307_Al_24         105.57783       675.9331      69.49002       33.06651
## s7307_In_25         145.87650       935.1258      73.26533       19.10132
## s7307_In_26         144.02722       939.3266      73.87698       19.59822
## s7307_In_27         185.81832       740.1022      84.69749       22.80498
## s7307_In_28         151.80969       635.1213      74.55865       27.54528
## s7307_In_Al_29      111.55790       763.1335      74.25463       35.19177
## s1903_2             115.26956       659.8068      64.17223       21.94179
## s7307_In_Al_30      130.80690       835.7806      90.97787       42.76379
## s7307_In_Al_31      115.29077       677.0780      76.30355       35.64545
## s7307_In_Al_32      116.00308       699.8988      80.26269       37.98692
## s8473_33            100.72745       346.5179      37.54631       18.67863
## s8473_34             74.79708       318.8484      34.73259       17.58842
## s8473_35             72.22747       335.9989      33.39100       16.95709
## s8473_36             96.71088       380.5298      40.12349       19.42261
## s8473_Al_37          77.12338       566.3162      35.75065       19.60519
## s8473_Al_38          71.92851       456.1879      33.73199       18.60220
## s8473_Al_39          61.44094       411.8350      26.44370       15.42047
## s1903_3             100.29672       721.7460      55.55357       19.81911
## s8473_Al_40          64.66242       425.3286      29.32903       16.16561
## s8473_In_41         130.56410      1113.0098      48.05067       25.20691
## s8473_In_42         107.35169       725.0942      37.02135       16.28622
## s8473_In_43         107.09318       743.2699      36.63187       21.87047
## s8473_In_44         134.16317       860.5450      56.40992       30.23219
## s8473_In_Al_45       71.66347       710.1416      33.03932       19.93547
## s8473_In_Al_46       72.89699       540.0235      34.01921       20.56737
## s8473_In_Al_47       84.48804       704.6146      39.16568       24.09474
## s8473_In_Al_48      100.08991       843.4770      46.58505       28.53440
## s8353_49             87.75633       378.4085      36.61660       20.47648
## s1903_4             104.00659       685.7695      59.58551       20.21925
## s8353_50             94.87777       382.8544      37.88183       21.95743
## s8353_51            103.65211       499.3044      38.79017       23.43845
## s8353_52             98.78766       413.1702      45.57038       22.13575
## s8353_Al_53          73.56843       415.9501      32.24028       23.08029
## s8353_Al_54          64.23963       371.2124      28.51519       19.76109
## s8353_Al_55          59.39493       372.6042      25.85094       18.72355
## s8353_Al_56          78.75218       448.2878      35.25859       25.26466
## s8353_In_57         102.60000       506.4300      40.95000       21.33000
## s8353_In_58          96.39706       425.5721      38.30735       20.11765
## s8353_In_59         103.84550       445.0388      41.91242       21.79820
## s1903_Al_5           83.49954       581.5191      49.75232       25.55855
## s8353_In_60         117.13358       558.8800      46.44601       24.44527
## s8353_In_Al_61       79.03591       453.0617      38.43315       25.72541
## s8353_In_Al_62       86.97945       504.4983      40.34589       27.59589
## s1903_Al_6           66.49103       456.2449      39.93547       20.73376
## s1903_Al_7           86.57992       730.9458      50.91524       26.17812
## s1903_Al_8           89.86558       815.9582      52.43265       27.07914
## s1903_In_9          144.35217       875.6883      80.21573       26.19658
##                BinePerPlantMn BinePerPlantMo BinePerPlantNi BinePerPlantP
## s1903_In_10         136.92329       97.71551       35.56054      50.66162
## s1903_In_11         128.77305       91.98075       32.44675      47.56491
## s1903_In_12         173.35530      123.64040       43.80086      63.08987
## s1903_In_Al_13      418.18605       28.06744       48.41163      65.24644
## s1903_In_Al_14      418.66667       27.85043       45.87130      65.59779
## s1903_In_Al_15      358.13110       24.01923       38.83349      57.00901
## s1903_In_Al_16      330.57692       23.29780       37.93764      54.05248
## s7307_17             97.88564       35.83168       31.59703      32.73817
## s7307_18            132.03683       48.86402       42.62606      43.47500
## s7307_19            119.12762       44.83701       39.39654      44.13090
## s1903_1             109.73402       63.33817       28.01997      38.49423
## s7307_20             93.10423       34.57704       30.13595      36.06687
## s7307_Al_21         599.40319       17.81145       49.48809      58.52607
## s7307_Al_22         373.15576       11.48383       31.25696      37.91731
## s7307_Al_23         469.22701       14.26248       40.17123      47.49151
## s7307_Al_24         488.44434       14.46869       41.45902      48.73869
## s7307_In_25         165.50115       38.59513       44.48252      58.62789
## s7307_In_26         159.59180       37.48654       42.52859      56.30655
## s7307_In_27         194.49923       43.16991       50.20849      61.29519
## s7307_In_28         186.81083       38.72908       44.52808      54.21087
## s7307_In_Al_29      526.11693       15.41399       43.63779      52.32488
## s1903_2             157.80057       82.05630       36.21899      48.74835
## s7307_In_Al_30      635.16810       18.38424       50.93922      61.91736
## s7307_In_Al_31      516.11648       15.65058       44.37116      53.16557
## s7307_In_Al_32      535.08462       16.56312       44.72654      55.62633
## s8473_33             75.21709       32.62479       20.60513      44.34270
## s8473_34             70.19802       30.58517       19.53404      41.54123
## s8473_35             68.26691       29.71145       19.00364      41.19019
## s8473_36             77.69043       34.15994       22.14859      48.64287
## s8473_Al_37         185.24026       14.99221       19.67727      39.88576
## s8473_Al_38         164.93951       13.95165       18.04413      37.72340
## s8473_Al_39         136.13386       11.38465       15.60118      32.54985
## s1903_3             122.81844       75.37268       31.83069      44.64856
## s8473_Al_40         142.60373       12.47061       15.99240      33.56499
## s8473_In_41         206.77543       49.92150       30.13013      56.06273
## s8473_In_42         102.48401       35.35301       20.17902      51.42502
## s8473_In_43         104.77335       35.62294       20.87706      48.78845
## s8473_In_44         235.43306       62.38388       37.21488      74.56392
## s8473_In_Al_45      166.78044       12.31309       20.19607      44.54952
## s8473_In_Al_46      165.97083       12.95223       20.89280      47.15425
## s8473_In_Al_47      194.00957       14.94187       24.72057      53.23932
## s8473_In_Al_48      230.03119       17.91083       27.65642      62.14568
## s8353_49            161.69916       81.09335       26.57067      41.38930
## s1903_4             123.61314       77.66030       32.62652      44.17140
## s8353_50            172.58718       86.29359       28.55369      44.40008
## s8353_51            186.76056       92.72662       31.09563      47.93864
## s8353_52            176.53721       87.99419       29.72777      45.76887
## s8353_Al_53         307.97765       16.44471       26.32596      37.24366
## s8353_Al_54         261.33558       14.28978       22.59330      32.27237
## s8353_Al_55         254.54972       13.29315       21.04278      30.56690
## s8353_Al_56         333.39757       18.06903       27.98301      41.20458
## s8353_In_57         111.60000       81.45000       29.97000      49.98330
## s8353_In_58         106.45588       77.78824       27.57794      46.80454
## s8353_In_59         111.32986       82.88929       30.77943      51.30248
## s1903_Al_5          281.64033       17.74210       30.76952      36.52267
## s8353_In_60         127.31911       93.50315       33.81596      57.28036
## s8353_In_Al_61      255.70442       28.97983       28.51492      39.54663
## s8353_In_Al_62      275.08562       30.73973       31.35103      42.56142
## s1903_Al_6          226.74359       14.09487       23.90000      29.75959
## s1903_Al_7          285.79778       17.41205       30.98144      38.35094
## s1903_Al_8          305.30402       18.58372       34.51263      39.20767
## s1903_In_9          162.23811      113.63895       40.64986      58.60265
##                BinePerPlantSe BinePerPLantZn SeedPerPlantAl SeedPerPlantB
## s1903_In_10          7.841556      146.95319      106.13241     17.868774
## s1903_In_11          7.329490      133.11860      109.29857     18.754685
## s1903_In_12          9.869054      183.88968       65.20734     36.981733
## s1903_In_Al_13       8.646279      308.93023       98.42801     18.382820
## s1903_In_Al_14       8.446145      296.70725      128.70299     19.422365
## s1903_In_Al_15       7.292067      257.45167       89.81994     12.372940
## s1903_In_Al_16       7.115275      258.16484      152.29688     21.241406
## s7307_17             6.661436       68.24307      185.82350     23.547100
## s7307_18             8.961870       81.92521      212.72460     34.627450
## s7307_19             8.179471      103.74421      206.13450     32.038500
## s1903_1              6.842086       81.84438       90.04526     12.393617
## s7307_20             6.455438       66.45770      147.58380     26.182000
## s7307_Al_21          8.319119      309.30058      112.67100     19.773600
## s7307_Al_22          5.301290      191.39724      183.26130     41.643700
## s7307_Al_23          6.785225      259.93151      185.53500     38.932900
## s7307_Al_24          6.898647      271.91747      140.42070     27.927900
## s7307_In_25          7.544585      117.09370      175.20000     32.758750
## s7307_In_26          7.541151      114.87102      244.86615     50.587050
## s7307_In_27          8.845140      204.35323      235.05750     43.877400
## s7307_In_28          7.994344      117.84409      196.44150     29.669500
## s7307_In_Al_29       7.407867      270.97661      164.08035     34.636500
## s1903_2              8.701574      106.10210      160.50663     10.162431
## s7307_In_Al_30       8.909124      327.01724      150.49125     19.661250
## s7307_In_Al_31       7.481832      278.48011      181.77780     32.756400
## s7307_In_Al_32       7.883308      292.05000      202.46400     31.798400
## s8473_33             5.611966      118.94017       77.93292     12.441035
## s8473_34             5.237613      110.51130       63.40828      3.216227
## s8473_35             4.999418      113.29091       61.84286      3.648611
## s8473_36             5.860857      130.33592       76.51766      5.044063
## s8473_Al_37          4.050779      146.31818       53.12246      3.104114
## s8473_Al_38          3.819652      133.31577       71.41680      6.726233
## s8473_Al_39          3.132283      112.64173       56.46528      4.106044
## s1903_3              7.657384       92.18890       57.06818      6.869318
## s8473_Al_40          3.377457      122.97407       59.75816      4.736766
## s8473_In_41          6.961440      276.68522      105.24981     17.596283
## s8473_In_42          5.464754      196.22907       89.75681     11.523875
## s8473_In_43          6.475769      194.80082       83.94660      9.703000
## s8473_In_44          8.882603      341.78926       86.99162      7.744412
## s8473_In_Al_45       3.413787      138.76654       73.62000     13.578800
## s8473_In_Al_46       3.514676      143.19052       52.75440      8.382950
## s8473_In_Al_47       4.021005      166.62919       52.54875      9.396000
## s8473_In_Al_48       4.837679      202.81376       74.61300     13.564100
## s8353_49             6.126692      129.19681       97.81800     20.755500
## s1903_4              7.903888       97.26684      101.75387     12.300774
## s8353_50             6.587228      131.02168       94.59840     10.524800
## s8353_51             7.096901      142.87183      107.21655      6.015450
## s8353_52             6.805372      135.37568      144.59500     26.862000
## s8353_Al_53          5.467144      156.51323       96.38880     12.375500
## s8353_Al_54          4.647396      133.88621       89.10000      9.792000
## s8353_Al_55          4.349972      129.53752       67.97460      6.779850
## s8353_Al_56          5.940393      167.89806       86.49420     16.079050
## s8353_In_57          7.893000      105.30000      144.07500     22.939000
## s8353_In_58          7.418382       94.72059       98.71950     14.475450
## s8353_In_59          7.980199      102.90995      124.46175     13.318200
## s1903_Al_5           5.719656      192.30948      101.41190     10.914286
## s8353_In_60          8.993822      116.11503      107.53080     13.560000
## s8353_In_Al_61       5.625497      139.47514      116.13750     19.427500
## s8353_In_Al_62       6.095548      145.83904       82.10310     21.956100
## s1903_Al_6           4.555299      151.16239       99.25214      8.262108
## s1903_Al_7           5.727964      199.33795       89.07605     13.361407
## s1903_Al_8           5.893695      203.09355       89.28980      7.469109
## s1903_In_9           9.159769      169.46475      130.49737     22.553762
##                SeedPerPlantCa SeedPerPlantCo SeedPerPlantCu SeedPerPlantFe
## s1903_In_10          4.807015      3.3757129      226.84791      1015.0094
## s1903_In_11          4.237314      3.5019120      204.27820      1119.0944
## s1903_In_12          4.187486      3.2449153      185.42373       748.9573
## s1903_In_Al_13       3.788459      2.7574230      173.83754       741.2588
## s1903_In_Al_14       3.750855      3.2927350      144.59402       799.6951
## s1903_In_Al_15       3.711882      2.5337079      200.16292       662.2770
## s1903_In_Al_16       5.610938      3.2062500      209.74219       618.6366
## s7307_17             9.447210      7.6599000      326.25500      1150.9709
## s7307_18            11.407770      8.8176000      330.66000      1319.0578
## s7307_19            10.729875      5.7427500      264.16650      1116.4108
## s1903_1              4.799710      3.7856867      243.36557       762.1398
## s7307_20             8.516040      8.4747000      324.51900       619.4799
## s7307_Al_21          6.375060      6.6896400      140.21280       860.3442
## s7307_Al_22         14.517255     10.1424900      376.53450      1620.8395
## s7307_Al_23          9.800960      7.1975800      243.84600      1527.9249
## s7307_Al_24          8.944740     10.1556000      341.77500       960.2901
## s7307_In_25         10.019250      9.3075000      320.28750      1220.1037
## s7307_In_26         13.965750     15.2071500      468.62850      2261.5204
## s7307_In_27         11.707380     12.4353000      451.91700      1394.2701
## s7307_In_28         10.405950     11.4180000      308.80500      1701.5415
## s7307_In_Al_29      10.294290      8.2161000      277.89750       837.8006
## s1903_2              4.737486      4.1845304      188.30387       712.4163
## s7307_In_Al_30       9.904125      7.3500000      192.93750       662.7862
## s7307_In_Al_31      12.576840      8.2902000      264.88200      1071.0534
## s7307_In_Al_32      13.990080     11.4912000      275.42400      1312.7328
## s8473_33             2.735323      1.5338262      115.42043       330.6929
## s8473_34             1.612809      1.4085667       76.76689       223.9058
## s8473_35             1.611042      0.9250000       80.93750       219.1633
## s8473_36             2.651160      1.4526902      107.13590       223.5932
## s8473_Al_37          1.261047      0.1940072       71.78265       162.1253
## s8473_Al_38          1.787012      1.3680473       79.34675       198.9654
## s8473_Al_39          1.231813      0.4648352       88.31868       194.2236
## s1903_3              3.371250      2.3250000      162.75000       486.8761
## s8473_Al_40          1.481185      0.2837520       55.44513       121.2756
## s8473_In_41          4.699628     10.0550186      190.17100       620.4602
## s8473_In_42          3.059681      4.8991875      170.08500       350.9852
## s8473_In_43          2.948460      3.3553600      167.14200       481.1123
## s8473_In_44          2.935191      6.1984853      142.76912       419.1737
## s8473_In_Al_45       4.642150      3.8037000      103.06800       296.7500
## s8473_In_Al_46       3.452310      3.6204000      152.57400       540.2800
## s8473_In_Al_47       4.027725      3.5235000      115.42500       491.2853
## s8473_In_Al_48       4.071320      4.8906000      156.75000       372.8769
## s8353_49             8.836500      4.6184070      180.01800       564.3441
## s1903_4              3.830368      2.2188104      170.49807       601.0641
## s8353_50             7.525440      3.8688000      151.00800       538.7616
## s8353_51             5.929515      3.1846500      207.76050       509.0890
## s8353_52            14.538150      7.5020000      295.24000      1059.4155
## s8353_Al_53          7.369260      5.1837000      212.95200      1037.7207
## s8353_Al_54          6.858000      3.9960000      189.00000       644.4360
## s8353_Al_55          4.904385      3.5220000      190.18800       636.3374
## s8353_Al_56          6.730170      5.5018500      200.88150      1056.4832
## s8353_In_57         12.831150     10.6785000      406.80000      1019.8815
## s8353_In_58         10.035630      9.0535500      403.57350      1188.7771
## s8353_In_59          7.245735      5.7078000      279.04800       808.1294
## s1903_Al_5           2.762679      1.8190476      159.16667       510.6067
## s8353_In_60         13.322700      8.3394000      423.07200      1614.3858
## s8353_In_Al_61       9.462000      7.2675000      245.10000      1621.2225
## s8353_In_Al_62      10.503720     10.7091000      410.76000      1370.7159
## s1903_Al_6           3.429487      1.1752137      134.61538       696.9231
## s1903_Al_7           3.141103      2.4613118      148.85076       652.0367
## s1903_Al_8           2.851842      1.4711881      157.30396       419.5376
## s1903_In_9           4.993273      2.9276519      221.20036       659.8602
##                SeedPerPlantK SeedPerPlantMg SeedPerPlantMn SeedPerPlantMo
## s1903_In_10         45.09952       6.238317       68.99957      27.140732
## s1903_In_11         43.89063       5.101119       70.85535      45.641587
## s1903_In_12         46.35593       6.876130       62.42599      33.685311
## s1903_In_Al_13      36.32605       5.335014       63.42073      13.907003
## s1903_In_Al_14      47.24359       6.113034       63.99359      17.179487
## s1903_In_Al_15      41.55281       5.194101       59.16208      12.364494
## s1903_In_Al_16      44.62031       6.091875       60.78516      15.630469
## s7307_17           100.14610      14.865880      106.67120      89.365500
## s7307_18           107.74005      16.009455      112.97550     103.055700
## s7307_19            99.74250      14.659125       90.07050      89.466000
## s1903_1             48.67311       6.476228       78.41779      25.553385
## s7307_20           101.28300      14.200290      100.24950      87.640800
## s7307_Al_21         54.89100       7.742520       89.75160      16.929540
## s7307_Al_22        128.63115      11.158190      182.60835      47.665350
## s7307_Al_23         97.18500       9.553580      159.03000      24.914700
## s7307_Al_24        111.12570      15.624000      163.07550      40.036500
## s7307_In_25        108.95250      16.260750      122.91375      92.253750
## s7307_In_26        164.17515      21.941745      169.14075     135.002250
## s7307_In_27        144.97740      20.503080      147.40380     139.214700
## s7307_In_28        108.73050      17.049150      132.86400      85.116000
## s7307_In_Al_29     101.49300      14.184855      143.78175      44.463600
## s1903_2             46.77707       6.620525       66.20525      30.188398
## s7307_In_Al_30      70.74375      11.025000      104.00250      17.970750
## s7307_In_Al_31      94.83180      13.365420      144.57300      29.521200
## s7307_In_Al_32      99.22560      14.646720      157.95840      26.265600
## s8473_33            23.39085       3.489455       23.26303      32.338170
## s8473_34            15.84638       1.943822       14.93081      24.579489
## s8473_35            15.72500       2.289375       14.49167      25.668750
## s8473_36            23.00093       3.208024       24.69573      36.680427
## s8473_Al_37         13.83918       1.959472       14.42120       8.600984
## s8473_Al_38         16.50207       2.650592       19.49467       7.763669
## s8473_Al_39         16.26923       2.316429       18.67088       9.993956
## s1903_3             33.60682       4.956477       44.80909      27.371591
## s8473_Al_40         12.93909       1.645761       18.78438      11.236578
## s8473_In_41         44.81041       6.295316       91.73383      64.009665
## s8473_In_42         38.91619       4.538681       65.53819      50.378437
## s8473_In_43         35.68200       4.338180       40.47090      52.396200
## s8473_In_44         34.31779       4.132324       61.98485      46.821176
## s8473_In_Al_45      28.28235       4.619655       29.32530      18.343650
## s8473_In_Al_46      34.65240       4.473780       35.68680      13.899750
## s8473_In_Al_47      32.01525       4.483350       37.78650       9.780750
## s8473_In_Al_48      42.44790       5.900070       43.45110      29.218200
## s8353_49            44.51130       6.329400      104.18850      50.265300
## s1903_4             36.20164       4.974807       44.25943      20.436412
## s8353_50            33.69600       6.489600       79.37280      45.547840
## s8353_51            39.88395       7.339860       60.05340      34.121250
## s8353_52            65.88450      11.827750      140.11800      69.938000
## s8353_Al_53         44.13150       8.391990       94.98780      19.894200
## s8353_Al_54         34.34400       6.566400       71.38800      17.604000
## s8353_Al_55         32.75460       5.696835       64.98090      15.672900
## s8353_Al_56         45.29430       8.176005      101.08050      13.946550
## s8353_In_57         85.42800      14.865150      125.43000      72.207000
## s8353_In_58         74.88360      12.721005      105.26670      63.835200
## s8353_In_59         54.22410      10.147200       91.00770      45.345300
## s1903_Al_5          33.65238       4.286131       42.06548      17.280952
## s8353_In_60         69.76620      13.078620      103.12380      60.409800
## s8353_In_Al_61      58.28250      10.317000      123.12000      21.232500
## s8353_In_Al_62      80.53830      14.391270      135.99090      56.039400
## s1903_Al_6          31.19658       4.113248       47.32906      10.074786
## s1903_Al_7          40.20143       5.133593       56.37576       9.071692
## s1903_Al_8          33.49782       4.424881       50.92574      12.222178
## s1903_In_9          49.60743       7.107688       56.11333      36.920943
##                SeedPerPlantNi SeedPerPlantP SeedPerPlantS SeedPerPlantZn
## s1903_In_10         10.127139     195.03114      3.942833      315.96673
## s1903_In_11         10.038815     174.43841      3.315143      273.61606
## s1903_In_12          5.099153     158.28542      5.176412      301.93164
## s1903_In_Al_13       3.236975     156.37825      4.112157      184.62745
## s1903_In_Al_14       6.155983     124.74741      4.395085      244.80769
## s1903_In_Al_15       3.293820     184.24744      3.876573      190.02809
## s1903_In_Al_16       3.874219     192.95880      3.900937      171.00000
## s7307_17            15.887200     316.14677     10.638750      314.90700
## s7307_18            19.564050     315.33115     10.691340      297.59400
## s7307_19            12.694500     257.32658     10.669425      344.56500
## s1903_1              6.624952     195.28329      3.988491      170.35590
## s7307_20            11.575200     315.08728     10.252320      291.44700
## s7307_Al_21          5.200200     131.80966      4.949820      250.38000
## s7307_Al_22         21.765000     357.89713     10.360140      563.71350
## s7307_Al_23         15.903000     225.18118      7.757130      508.89600
## s7307_Al_24         16.209900     327.00446      9.432990      505.82700
## s7307_In_25         49.731250     313.27129     10.648875      333.97500
## s7307_In_26         67.656300     445.15673     16.386480      533.80200
## s7307_In_27         37.305900     447.17642     15.377310      421.58700
## s7307_In_28         22.057500     299.55901     10.483800      461.91000
## s7307_In_Al_29      15.223950     269.28751      9.231030      415.63800
## s1903_2             10.760221     162.05640      4.244309      249.57735
## s7307_In_Al_30      11.392500     188.22799      5.769750      336.26250
## s7307_In_Al_31      15.569400     253.63361      8.694600      422.59800
## s7307_In_Al_32      32.102400     254.33309      7.733760      514.36800
## s8473_33             2.172921     110.99406      2.262394      106.21747
## s8473_34             1.619852      73.55324      1.443781       52.89168
## s8473_35             1.156250      78.19102      1.480000       61.20417
## s8473_36             3.026438     103.67002      2.179035       87.76670
## s8473_Al_37          7.393828      70.12518      1.176977       62.92299
## s8473_Al_38          5.754349      77.32631      1.410799       85.33195
## s8473_Al_39          9.374176      87.10779      1.332527       92.19231
## s1903_3              2.959091     135.73456      3.328977      124.70455
## s8473_Al_40          6.253893      56.99839      1.123658       56.40989
## s8473_In_41          6.339033     174.25457      4.808922      313.67286
## s8473_In_42          4.344563     164.01833      3.336994      133.11000
## s8473_In_43          2.817000     164.73534      3.079920      174.65400
## s8473_In_44          6.207353     144.04340      3.289897      168.48529
## s8473_In_Al_45      13.967350      99.04160      2.244694       68.71200
## s8473_In_Al_46      11.512010     143.15902      2.508420      131.23950
## s8473_In_Al_47      15.835500     113.86798      2.272050      114.21000
## s8473_In_Al_48      11.177320     152.00800      3.028410      113.48700
## s8353_49            13.193100     250.83782      5.166270      169.33200
## s1903_4              4.320841     148.82029      3.153046      140.13540
## s8353_50             5.865600     156.54538      3.818880      223.39200
## s8353_51             6.520950     220.55521      4.776975      169.84800
## s8353_52            20.328000     312.36816      6.219400      340.01000
## s8353_Al_53         10.927800     216.36624      5.029590      260.58600
## s8353_Al_54          6.804000     194.87196      3.985200      212.76000
## s8353_Al_55          7.924500     198.49728      3.601245      235.97400
## s8353_Al_56         13.562700     201.44064      5.092410      282.76950
## s8353_In_57         14.068500     416.01572      9.627600      359.34000
## s8353_In_58         12.736350     424.19258      8.148195      288.48600
## s8353_In_59          9.195900     340.51836      6.532260      271.12050
## s1903_Al_5           7.048810     131.24087      2.921845      147.79762
## s8353_In_60         12.204000     417.85886      8.258040      364.08600
## s8353_In_Al_61      14.535000     247.14773      6.312750      332.02500
## s8353_In_Al_62      16.870500     421.67008      8.992710      426.89700
## s1903_Al_6           3.311966     114.78312      2.702991      136.75214
## s1903_Al_7           2.695722     134.12626      3.293470      157.05513
## s1903_Al_8           1.697525     141.95494      3.032911      145.98713
## s1903_In_9           6.017951     197.51403      4.814361      348.55322
##                BineSeedPerPlantAl BineSeedPerPlantB BineSeedPerPlantCa
## s1903_In_10             106.13241          754.9142           74.61105
## s1903_In_11             109.29857          699.5571           81.87776
## s1903_In_12              65.20734         1027.5835           92.77488
## s1903_In_Al_13           98.42801         1212.6619           89.05823
## s1903_In_Al_14          128.70299         1024.2224          103.74544
## s1903_In_Al_15           89.81994          864.0729           76.00930
## s1903_In_Al_16          152.29688          957.8760           73.72028
## s7307_17                185.82350          823.2451           57.11421
## s7307_18                212.72460         1115.8739           69.49011
## s7307_19                206.13450          853.7377           65.63489
## s1903_1                  90.04526          673.1436           52.06440
## s7307_20                147.58380          636.8315           58.63689
## s7307_Al_21             112.67100         1175.9178           95.82337
## s7307_Al_22             183.26130          759.0391           69.96278
## s7307_Al_23             185.53500          999.3292           81.70409
## s7307_Al_24             140.42070         1006.4951           91.63898
## s7307_In_25             175.20000          889.7014           66.63998
## s7307_In_26             244.86615          850.7383           61.46331
## s7307_In_27             235.05750          980.0076           70.36215
## s7307_In_28             196.44150          880.8807           67.56758
## s7307_In_Al_29          164.08035         1088.6300           96.98335
## s1903_2                 160.50663          866.2932           65.25275
## s7307_In_Al_30          150.49125         1227.1095          111.08382
## s7307_In_Al_31          181.77780         1051.9936           91.04635
## s7307_In_Al_32          202.46400         1106.0522           97.58854
## s8473_33                 77.93292          555.4615           44.28062
## s8473_34                 63.40828          428.1400           38.91686
## s8473_35                 61.84286          505.0522           37.86413
## s8473_36                 76.51766          484.6462           49.73110
## s8473_Al_37              53.12246          517.0197           43.49871
## s8473_Al_38              71.41680          526.8244           42.05044
## s8473_Al_39              56.46528          483.4779           34.32158
## s1903_3                  57.06818          795.1295           52.81893
## s8473_Al_40              59.75816          470.0368           35.89083
## s8473_In_41             105.24981          598.9963           78.41671
## s8473_In_42              89.75681          503.2882           63.12008
## s8473_In_43              83.94660          486.2277           56.44754
## s8473_In_44              86.99162          642.8158           47.36453
## s8473_In_Al_45           73.62000          403.4281           45.42518
## s8473_In_Al_46           52.75440          486.7695           47.66781
## s8473_In_Al_47           52.54875          540.7710           56.38945
## s8473_In_Al_48           74.61300          621.4477           64.59352
## s8353_49                 97.81800          602.5474           71.67707
## s1903_4                 101.75387          788.9038           61.42459
## s8353_50                 94.59840          605.0921           93.00579
## s8353_51                107.21655          679.2873           78.18406
## s8353_52                144.59500          851.9219           95.21474
## s8353_Al_53              96.38880          645.6410           86.90010
## s8353_Al_54              89.10000          544.6932           74.40188
## s8353_Al_55              67.97460          532.8493           69.72971
## s8353_Al_56              86.49420          712.4562           91.95842
## s8353_In_57             144.07500          643.0390           87.47115
## s8353_In_58              98.71950          589.5049           80.67092
## s8353_In_59             124.46175          633.5846           82.02697
## s1903_Al_5              101.41190          776.4301           64.71528
## s8353_In_60             107.53080          737.7511           98.47372
## s8353_In_Al_61          116.13750          677.2852           91.54570
## s8353_In_Al_62           82.10310          729.3191           98.06536
## s1903_Al_6               99.25214          583.2920           60.21752
## s1903_Al_7               89.07605          863.5498           63.90315
## s1903_Al_8               89.28980          928.6908           68.24885
## s1903_In_9              130.49737          990.9238          100.62584
##                BineSeedPerPlantCo BineSeedPerPlantCu BineSeedPerPlantFe
## s1903_In_10             185.73747          253.59430          1137.9516
## s1903_In_11             177.32380          229.91693          1235.8447
## s1903_In_12             234.26211          219.79909           902.3528
## s1903_In_Al_13          221.26905          214.90265           882.7263
## s1903_In_Al_14          225.36810          184.64039           938.9473
## s1903_In_Al_15          190.94806          234.25010           782.8047
## s1903_In_Al_16          179.51394          243.27213           734.3385
## s7307_17                177.04604          351.33718          1238.5957
## s7307_18                237.54281          364.13705          1430.3015
## s7307_19                225.23774          295.12092          1219.0293
## s1903_1                 138.02089          264.60862           850.2398
## s7307_20                182.94600          348.46915           700.6884
## s7307_Al_21             237.06525          183.08826           986.1975
## s7307_Al_22             153.34618          404.07367          1701.3916
## s7307_Al_23             187.79934          278.78485          1630.7160
## s7307_Al_24             199.82643          377.86281          1065.8679
## s7307_In_25             198.14016          357.79237          1365.9803
## s7307_In_26             206.14735          503.70362          2405.5477
## s7307_In_27             249.40058          492.50610          1580.0884
## s7307_In_28             233.02287          346.70565          1853.3512
## s7307_In_Al_29          212.32835          315.90461           949.3585
## s1903_2                 184.52804          215.80625           827.6859
## s7307_In_Al_30          254.70920          238.84569           793.5931
## s7307_In_Al_31          210.65242          303.68356          1186.3442
## s7307_In_Al_32          221.84889          316.27015          1428.7359
## s8473_33                 89.48254          134.01530           431.4204
## s8473_34                 85.45941           94.04400           298.7028
## s8473_35                 80.59409           97.74841           291.3908
## s8473_36                 93.45451          126.30295           320.3041
## s8473_Al_37              70.32583           89.80213           239.2487
## s8473_Al_38              68.33597           95.84070           270.8939
## s8473_Al_39              54.91838          102.47419           255.6646
## s1903_3                 152.46979          187.22360           587.1729
## s8473_Al_40              56.80564           70.16738           185.9380
## s8473_In_41             121.31989          222.56582           751.0243
## s8473_In_42              73.61908          190.97903           458.3369
## s8473_In_43              71.49684          187.63101           588.2055
## s8473_In_44             160.93402          184.19515           553.3368
## s8473_In_Al_45           84.58798          121.37476           368.4134
## s8473_In_Al_46           79.77172          170.92842           613.1770
## s8473_In_Al_47           94.26991          137.09462           575.7733
## s8473_In_Al_48          112.00436          182.12367           472.9668
## s8353_49                180.94362          202.28210           652.1004
## s1903_4                 158.45846          195.31260           705.0707
## s8353_50                191.81714          174.77262           633.6394
## s8353_51                206.75366          232.87980           612.7412
## s8353_52                195.01561          319.29662          1158.2032
## s8353_Al_53             167.46700          235.67166          1111.2891
## s8353_Al_54             141.10063          208.69672           708.6756
## s8353_Al_55             133.62519          208.62871           695.7323
## s8353_Al_56             180.59554          225.58650          1135.2353
## s8353_In_57             213.17850          430.47000          1122.4815
## s8353_In_58             200.17120          425.87056          1285.1742
## s8353_In_59             214.33434          303.55928           911.9748
## s1903_Al_5              138.29674          185.71778           594.1062
## s8353_In_60             242.60656          450.06365          1731.5194
## s8353_In_Al_61          178.51198          269.27569          1700.2584
## s8353_In_Al_62          191.47965          437.39527          1457.6954
## s1903_Al_6              111.48291          155.65556           763.4141
## s1903_Al_7              145.36020          175.74938           738.6166
## s1903_Al_8              146.15875          185.71051           509.4032
## s1903_In_9              216.11359          253.17825           804.2124
##                BineSeedPerPlantK BineSeedPerPlantMg BineSeedPerPlantMo
## s1903_In_10             688.9885           75.23185           91.33889
## s1903_In_11             625.7594           70.57403           92.00368
## s1903_In_12             823.8674           94.10822           90.51768
## s1903_In_Al_13         1036.0167           85.20478          102.97887
## s1903_In_Al_14         1024.1932           85.11361          103.49388
## s1903_In_Al_15          866.6926           74.23142           92.81777
## s1903_In_Al_16          798.1783           74.72594           93.21318
## s7307_17                523.8868           71.70796          121.68793
## s7307_18                663.5034           92.11257          132.95777
## s7307_19                670.7035           86.88611          115.20924
## s1903_1                 633.9647           53.39339           95.62075
## s7307_20                557.9704           69.07944          115.09542
## s7307_Al_21             841.3677           91.57364          130.06733
## s7307_Al_22             629.4310           65.27266          208.21978
## s7307_Al_23             938.9242           78.92491          191.43705
## s7307_Al_24             787.0588           85.11402          196.14201
## s7307_In_25            1044.0783           89.52608          142.01507
## s7307_In_26            1103.5018           95.81872          188.73897
## s7307_In_27             885.0796          105.20057          170.20878
## s7307_In_28             743.8518           91.60780          160.40928
## s7307_In_Al_29          864.6265           88.43949          178.97352
## s1903_2                 706.5838           70.79276           88.14704
## s7307_In_Al_30          906.5244          102.00287          146.76629
## s7307_In_Al_31          771.9098           89.66897          180.21845
## s7307_In_Al_32          799.1244           94.90941          195.94532
## s8473_33                369.9088           41.03576           41.94166
## s8473_34                334.6948           36.67641           32.51923
## s8473_35                351.7239           35.68038           31.44876
## s8473_36                403.5307           43.33151           44.11834
## s8473_Al_37             580.1554           37.71012           34.02639
## s8473_Al_38             472.6900           36.38258           38.09687
## s8473_Al_39             428.1043           28.76013           34.09135
## s1903_3                 755.3528           60.51005           64.62820
## s8473_Al_40             438.2677           30.97479           34.94999
## s8473_In_41            1157.8202           54.34599          116.94074
## s8473_In_42             764.0104           41.56004           81.82441
## s8473_In_43             778.9519           40.97005           62.34137
## s8473_In_44             894.8628           60.54224           92.21704
## s8473_In_Al_45          738.4239           37.65897           49.26077
## s8473_In_Al_46          574.6759           38.49299           56.25417
## s8473_In_Al_47          736.6298           43.64903           61.88124
## s8473_In_Al_48          885.9249           52.48512           71.98550
## s8353_49                422.9198           42.94600          124.66498
## s1903_4                 721.9712           64.56032           64.47868
## s8353_50                416.5504           44.37143          101.33023
## s8353_51                539.1883           46.13003           83.49185
## s8353_52                479.0547           57.39813          162.25375
## s8353_Al_53             460.0816           40.63227          118.06809
## s8353_Al_54             405.5564           35.08159           91.14909
## s8353_Al_55             405.3588           31.54777           83.70445
## s8353_Al_56             493.5821           43.43460          126.34516
## s8353_In_57             591.8580           55.81515          146.76000
## s8353_In_58             500.4557           51.02836          125.38435
## s8353_In_59             499.2629           52.05962          112.80590
## s1903_Al_5              615.1714           54.03845           67.62403
## s8353_In_60             628.6462           59.52463          127.56907
## s8353_In_Al_61          511.3442           48.75015          148.84541
## s8353_In_Al_62          585.0366           54.73716          163.58679
## s1903_Al_6              487.4415           44.04872           68.06282
## s1903_Al_7              771.1473           56.04883           82.55388
## s1903_Al_8              849.4560           56.85753           78.00488
## s1903_In_9              925.2958           87.32341           82.30990
##                BineSeedPerPlantNi BineSeedPerPlantP BineSeedPerPlantS
## s1903_In_10             164.06402         107.84265         230.59168
## s1903_In_11             174.41464         102.01957         206.88516
## s1903_In_12             207.04061         128.73955         202.08628
## s1903_In_Al_13          432.09305          31.30442         204.78988
## s1903_In_Al_14          435.84615          34.00642         170.61872
## s1903_In_Al_15          370.49559          27.31305         223.08093
## s1903_In_Al_16          346.20739          27.17202         230.89644
## s7307_17                187.25114          51.71888         347.74380
## s7307_18                235.09253          68.42807         357.95722
## s7307_19                208.59362          57.53151         296.72312
## s1903_1                 135.28741          69.96312         223.30326
## s7307_20                180.74503          46.15224         345.22323
## s7307_Al_21             616.33273          23.01165         181.29775
## s7307_Al_22             420.82111          33.24883         389.15409
## s7307_Al_23             494.14171          30.16548         265.35241
## s7307_Al_24             528.48084          30.67859         368.46348
## s7307_In_25             257.75490          88.32638         357.75381
## s7307_In_26             294.59405         105.14284         487.68531
## s7307_In_27             333.71393          80.47581         497.38491
## s7307_In_28             271.92683          60.78658         344.08710
## s7307_In_Al_29          570.58053          30.63794         312.92530
## s1903_2                 187.98897          92.81652         198.27539
## s7307_In_Al_30          653.13885          29.77674         239.16721
## s7307_In_Al_31          545.63768          31.21998         298.00478
## s7307_In_Al_32          561.35022          48.66552         299.05963
## s8473_33                107.55526          34.79771         131.59919
## s8473_34                 94.77751          32.20502          93.08728
## s8473_35                 93.93566          30.86770          97.19466
## s8473_36                114.37086          37.18637         125.81861
## s8473_Al_37             193.84124          22.38604          89.80245
## s8473_Al_38             172.70317          19.70600          95.37044
## s8473_Al_39             146.12781          20.75882         102.70897
## s1903_3                 150.19003          78.33177         167.56525
## s8473_Al_40             153.84031          18.72450          72.99079
## s8473_In_41             270.78510          56.26053         204.38470
## s8473_In_42             152.86245          39.69757         184.19735
## s8473_In_43             157.16955          38.43994         185.61240
## s8473_In_44             282.25423          68.59124         181.25827
## s8473_In_Al_45          185.12409          26.28044         119.23767
## s8473_In_Al_46          179.87058          24.46424         164.05182
## s8473_In_Al_47          203.79032          30.77737         138.58855
## s8473_In_Al_48          259.24939          29.08815         179.66442
## s8353_49                211.96446          94.28645         277.40849
## s1903_4                 144.04955          81.98114         181.44680
## s8353_50                218.13502          92.15919         185.09907
## s8353_51                220.88181          99.24757         251.65084
## s8353_52                246.47521         108.32219         342.09592
## s8353_Al_53             327.87185          27.37251         242.69220
## s8353_Al_54             278.93958          21.09378         217.46526
## s8353_Al_55             270.22262          21.21765         219.54006
## s8353_Al_56             347.34412          31.63173         229.42365
## s8353_In_57             183.80700          95.51850         445.98572
## s8353_In_58             170.29108          90.52459         451.77052
## s8353_In_59             156.67516          92.08519         371.29779
## s1903_Al_5              298.92129          24.79091         162.01039
## s8353_In_60             187.72891         105.70715         451.67481
## s8353_In_Al_61          276.93692          43.51483         275.66264
## s8353_In_Al_62          331.12502          47.61023         453.02111
## s1903_Al_6              236.81838          17.40684         138.68312
## s1903_Al_7              294.86948          20.10777         165.10770
## s1903_Al_8              317.52620          20.28125         176.46757
## s1903_In_9              199.15906         119.65690         238.16389
##                BineSeedPerPlantS.1 BineSeedPerPlantZn    QRTPCR
## s1903_In_10               54.60445          323.80829    8685.0
## s1903_In_11               50.88006          280.94555    1058.0
## s1903_In_12               68.26628          311.80069     788.1
## s1903_In_Al_13            69.35860          193.27373    2116.0
## s1903_In_Al_14            69.99287          253.25384    6881.0
## s1903_In_Al_15            60.88558          197.32016    6895.0
## s1903_In_Al_16            57.95341          178.11527    1293.0
## s7307_17                  43.37692          321.56844    9420.0
## s7307_18                  54.16634          306.55587    4897.0
## s7307_19                  54.80033          352.74447    1298.0
## s1903_1                   42.48272          177.19799     997.0
## s7307_20                  46.31919          297.90244    9063.0
## s7307_Al_21               63.47589          258.69912    8162.0
## s7307_Al_22               48.27745          569.01479    8482.0
## s7307_Al_23               55.24864          515.68123   21270.0
## s7307_Al_24               58.17168          512.72565    1417.0
## s7307_In_25               69.27677          341.51958   11040.0
## s7307_In_26               72.69303          541.34315   54130.0
## s7307_In_27               76.67250          430.43214   23910.0
## s7307_In_28               64.69467          469.90434   19300.0
## s7307_In_Al_29            61.55591          423.04587   27000.0
## s1903_2                   52.99266          258.27892   11530.0
## s7307_In_Al_30            67.68711          345.17162   58570.0
## s7307_In_Al_31            61.86017          430.07983  436900.0
## s7307_In_Al_32            63.36009          522.25131  535400.0
## s8473_33                  46.60509          111.82943  718000.0
## s8473_34                  42.98501           58.12929  355900.0
## s8473_35                  42.67019           66.20358  585800.0
## s8473_36                  50.82190           93.62755  356400.0
## s8473_Al_37               41.06274           66.97377  481100.0
## s8473_Al_38               39.13420           89.15160  386600.0
## s8473_Al_39               33.88237           95.32459  147200.0
## s1903_3                   47.97753          132.36193    2187.0
## s8473_Al_40               34.68865           59.78735  455700.0
## s8473_In_41               60.87165          320.63430  185300.0
## s8473_In_42               54.76201          138.57475 1141000.0
## s8473_In_43               51.86837          181.12977 2180000.0
## s8473_In_44               77.85382          177.36790 1713000.0
## s8473_In_Al_45            46.79421           72.12579 1494000.0
## s8473_In_Al_46            49.66267          134.75418 1134000.0
## s8473_In_Al_47            55.51137          118.23100 1244000.0
## s8473_In_Al_48            65.17409          118.32468  852300.0
## s8353_49                  46.55557          175.45869  623500.0
## s1903_4                   47.32445          148.03928     743.3
## s8353_50                  48.21896          229.97923 1014000.0
## s8353_51                  52.71561          176.94490 1675000.0
## s8353_52                  51.98827          346.81537 1288000.0
## s8353_Al_53               42.27325          266.05314 1718000.0
## s8353_Al_54               36.25757          217.40740 1046000.0
## s8353_Al_55               34.16814          240.32397 1156000.0
## s8353_Al_56               46.29699          288.70989 1952000.0
## s8353_In_57               59.61090          367.23300 1045000.0
## s8353_In_58               54.95274          295.90438  300100.0
## s8353_In_59               57.83474          279.10070  493000.0
## s1903_Al_5                39.44452          153.51728    2205.0
## s8353_In_60               65.53840          373.07982  650800.0
## s8353_In_Al_61            45.85938          337.65050  717900.0
## s8353_In_Al_62            51.55413          432.99255  450500.0
## s1903_Al_6                32.46258          141.30744    2647.0
## s1903_Al_7                41.64441          162.78310    1637.0
## s1903_Al_8                42.24058          151.88082    3126.0
## s1903_In_9                63.41701          357.71299    2034.0

###Alpha richess 1903 без In - неадекватная кривая разрежения Удалить s8473_In_41

plot_rich_reads_samlenames_lm <- function(ps.f){
  rish <- estimate_richness(ps.f, measures = "Observed")
  reads.sum <- as.data.frame(sample_sums(ps.f))
  reads.summary <- cbind(rish, reads.sum)
  colnames(reads.summary) <- c("otus","reads")
  reads.summary["Description"] <- rownames(ps.f@sam_data)
  reads.summary["Repeats"] <- ps.f@sam_data$Description
  reads.summary["Plant"] <- ps.f@sam_data$Plant
  library(ggrepel)
  require(ggforce)
  p1 <- ggplot(data=reads.summary) + geom_point(aes(y=otus, x=log2(reads), color=Repeats),size=3) + geom_text_repel(aes(y=otus, x=log2(reads), label=Repeats)) + theme_bw()+
    geom_smooth(aes(y=otus, x=log2(reads), fill=Repeats, color=Repeats),method=lm, se=FALSE, ymin = 1) + scale_x_continuous(sec.axis = sec_axis(sec.axis ~ 2**.)) 
  # geom_mark_ellipse(aes(y = otus, x=reads, group = Repeats, label = Repeats, color = Repeats), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
  
  return(p1)
}

plot_rich_reads_samlenames_lm(ps)

ps.f <-  subset_samples(ps, sample_names(ps) != 's8473_In_41')
ps.f <- prune_taxa(taxa_sums(ps.f) > 0,ps.f)
plot_rich_reads_samlenames_lm(ps.f)

###Split

ps.f.s1903 <- prune_samples(sample_data(ps.f)$Plant %in% c("s1903"), ps.f)
ps.f.s1903 <- prune_taxa(taxa_sums(ps.f.s1903) > 0,ps.f.s1903)

ps.f.s7307 <- prune_samples(sample_data(ps.f)$Plant %in% c("s7307"), ps.f)
ps.f.s7307 <- prune_taxa(taxa_sums(ps.f.s7307) > 0,ps.f.s7307)

ps.f.s8473 <- prune_samples(sample_data(ps.f)$Plant %in% c("s8473"), ps.f)
ps.f.s8473 <- prune_taxa(taxa_sums(ps.f.s8473) > 0,ps.f.s8473)

ps.f.s8353 <- prune_samples(sample_data(ps.f)$Plant %in% c("s8353"), ps.f)
ps.f.s8353 <- prune_taxa(taxa_sums(ps.f.s8353) > 0,ps.f.s8353)

# physeq <- ps.f.s1903
# physeq@sam_data$Al
# 
# physeq.Al.pos <- prune_samples(sample_data(physeq)$Al %in% c("pos"), physeq)
# physeq.Al.pos <- prune_taxa(taxa_sums(physeq.Al.pos) > 0, physeq.Al.pos)
# 
# physeq.Al.neg <- prune_samples(sample_data(physeq)$Al %in% c("neg"),physeq)
# physeq.Al.neg <- prune_taxa(taxa_sums(physeq.Al.neg) > 0, physeq.Al.neg)
# 
# physeq.In.pos <- prune_samples(sample_data(physeq)$Inoculation %in% c("pos"), physeq)
# physeq.In.pos <- prune_taxa(taxa_sums(physeq.In.pos) > 0,physeq.In.pos)
# 
# physeq.In.neg <- prune_samples(sample_data(physeq)$Inoculation %in% c("pos"), physeq)
# physeq.In.neg <- prune_taxa(taxa_sums(physeq.In.neg) > 0,physeq.In.neg)

###Beta ####Colour - plants Цвета для генотипов растений

beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
  require(phyloseq)
  require(ggplot2)
  require(ggpubr)
  require(DESeq2)
  library(ggforce)
  
  
  # beta_NMDS <- function(){
  #normalisation. unifrac - rarefaction; wunifrac,bray - varstab
  
  diagdds = phyloseq_to_deseq2(ps, ~ Description)                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  if (normtype =="vst")
    pst <- varianceStabilizingTransformation(diagdds)
  if (normtype =="log") 
    pst <- rlogTransformation(diagdds)
  
  pst.dimmed <- t(as.matrix(assay(pst))) 
  pst.dimmed[pst.dimmed < 0.0] <- 0.0
  ps.varstab <- ps
  otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE) 
  
  ps.rand <- rarefy_even_depth(ps, rngseed = seed)
  
  #beta and ordination
  
  ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
  ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
  ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
  
  #plotting
  p1 = plot_ordination(ps, ordination.b, type="sample", color="Plant", title="NMDS - Bray", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p2 = plot_ordination(ps, ordination.u, type="sample", color="Plant", title="NMDS - unifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p3 = plot_ordination(ps, ordination.w, type="sample", color="Plant", title="NMDS - wunifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  #merge by ggpubr
  
  p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
  
  return(p.all)
}

beta_custom_norm_NMDS_elli(ps.f)

####Colour - Al

beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
  require(phyloseq)
  require(ggplot2)
  require(ggpubr)
  require(DESeq2)
  library(ggforce)
  
  
  # beta_NMDS <- function(){
  #normalisation. unifrac - rarefaction; wunifrac,bray - varstab
  
  diagdds = phyloseq_to_deseq2(ps, ~ Description)                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  if (normtype =="vst")
    pst <- varianceStabilizingTransformation(diagdds)
  if (normtype =="log") 
    pst <- rlogTransformation(diagdds)
  
  pst.dimmed <- t(as.matrix(assay(pst))) 
  pst.dimmed[pst.dimmed < 0.0] <- 0.0
  ps.varstab <- ps
  otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE) 
  
  ps.rand <- rarefy_even_depth(ps, rngseed = seed)
  
  #beta and ordination
  
  ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
  ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
  ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
  
  #plotting
  p1 = plot_ordination(ps, ordination.b, type="sample", color="pH", title="NMDS - Bray", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p2 = plot_ordination(ps, ordination.u, type="sample", color="pH", title="NMDS - unifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p3 = plot_ordination(ps, ordination.w, type="sample", color="pH", title="NMDS - wunifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  #merge by ggpubr
  
  p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
  
  return(p.all)
}

beta_custom_norm_NMDS_elli(ps.f)

####Colour - Inoculation

beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
  require(phyloseq)
  require(ggplot2)
  require(ggpubr)
  require(DESeq2)
  library(ggforce)
  
  
  # beta_NMDS <- function(){
  #normalisation. unifrac - rarefaction; wunifrac,bray - varstab
  
  diagdds = phyloseq_to_deseq2(ps, ~ Description)                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  if (normtype =="vst")
    pst <- varianceStabilizingTransformation(diagdds)
  if (normtype =="log") 
    pst <- rlogTransformation(diagdds)
  
  pst.dimmed <- t(as.matrix(assay(pst))) 
  pst.dimmed[pst.dimmed < 0.0] <- 0.0
  ps.varstab <- ps
  otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE) 
  
  ps.rand <- rarefy_even_depth(ps, rngseed = seed)
  
  #beta and ordination
  
  ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
  ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
  ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
  
  #plotting
  p1 = plot_ordination(ps, ordination.b, type="sample", color="Inoculation", title="NMDS - Bray", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p2 = plot_ordination(ps, ordination.u, type="sample", color="Inoculation", title="NMDS - unifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p3 = plot_ordination(ps, ordination.w, type="sample", color="Inoculation", title="NMDS - wunifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  #merge by ggpubr
  
  p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
  
  return(p.all)
}

beta_custom_norm_NMDS_elli(ps.f)

####Colour - Mic

beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
  require(phyloseq)
  require(ggplot2)
  require(ggpubr)
  require(DESeq2)
  library(ggforce)
  
  
  # beta_NMDS <- function(){
  #normalisation. unifrac - rarefaction; wunifrac,bray - varstab
  
  diagdds = phyloseq_to_deseq2(ps, ~ Description)                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  if (normtype =="vst")
    pst <- varianceStabilizingTransformation(diagdds)
  if (normtype =="log") 
    pst <- rlogTransformation(diagdds)
  
  pst.dimmed <- t(as.matrix(assay(pst))) 
  pst.dimmed[pst.dimmed < 0.0] <- 0.0
  ps.varstab <- ps
  otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE) 
  
  ps.rand <- rarefy_even_depth(ps, rngseed = seed)
  
  #beta and ordination
  
  ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
  ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
  ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
  
  #plotting
  p1 = plot_ordination(ps, ordination.b, type="sample", color="Mic", title="NMDS - Bray", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p2 = plot_ordination(ps, ordination.u, type="sample", color="Mic", title="NMDS - unifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p3 = plot_ordination(ps, ordination.w, type="sample", color="Mic", title="NMDS - wunifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  #merge by ggpubr
  
  p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
  
  return(p.all)
}

beta_custom_norm_NMDS_elli(ps.f)

####Colour - SeedMg

beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
  require(phyloseq)
  require(ggplot2)
  require(ggpubr)
  require(DESeq2)
  library(ggforce)
  
  
  # beta_NMDS <- function(){
  #normalisation. unifrac - rarefaction; wunifrac,bray - varstab
  
  diagdds = phyloseq_to_deseq2(ps, ~ Description)                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  if (normtype =="vst")
    pst <- varianceStabilizingTransformation(diagdds)
  if (normtype =="log") 
    pst <- rlogTransformation(diagdds)
  
  pst.dimmed <- t(as.matrix(assay(pst))) 
  pst.dimmed[pst.dimmed < 0.0] <- 0.0
  ps.varstab <- ps
  otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE) 
  
  ps.rand <- rarefy_even_depth(ps, rngseed = seed)
  
  #beta and ordination
  
  ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
  ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
  ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
  
  #plotting
  p1 = plot_ordination(ps, ordination.b, type="sample", color="SoilAl", title="NMDS - Bray", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p2 = plot_ordination(ps, ordination.u, type="sample", color="SoilAl", title="NMDS - unifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p3 = plot_ordination(ps, ordination.w, type="sample", color="SoilAl", title="NMDS - wunifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  #merge by ggpubr
  
  p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
  
  return(p.all)
}

beta_custom_norm_NMDS_elli(ps.f)

####Colour - SoilK

beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
  require(phyloseq)
  require(ggplot2)
  require(ggpubr)
  require(DESeq2)
  library(ggforce)
  
  
  # beta_NMDS <- function(){
  #normalisation. unifrac - rarefaction; wunifrac,bray - varstab
  
  diagdds = phyloseq_to_deseq2(ps, ~ Description)                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  if (normtype =="vst")
    pst <- varianceStabilizingTransformation(diagdds)
  if (normtype =="log") 
    pst <- rlogTransformation(diagdds)
  
  pst.dimmed <- t(as.matrix(assay(pst))) 
  pst.dimmed[pst.dimmed < 0.0] <- 0.0
  ps.varstab <- ps
  otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE) 
  
  ps.rand <- rarefy_even_depth(ps, rngseed = seed)
  
  #beta and ordination
  
  ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
  ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
  ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
  
  #plotting
  p1 = plot_ordination(ps, ordination.b, type="sample", color="SoilK", title="NMDS - Bray", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p2 = plot_ordination(ps, ordination.u, type="sample", color="SoilK", title="NMDS - unifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  p3 = plot_ordination(ps, ordination.w, type="sample", color="SoilK", title="NMDS - wunifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) 
  
  #merge by ggpubr
  
  p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
  
  return(p.all)
}

beta_custom_norm_NMDS_elli(ps.f)

###PERMANOVA All Сначала для всего

permanova.forloop.noNestedPlant <- function(factor){
  require(vegan)
  require(phyloseq)
  dist <- phyloseq::distance(physeq, "bray")
  metadata <- as(sample_data(physeq@sam_data), "data.frame")
  ad <- adonis2(as.formula(paste( "dist ~ ", factor)), data = metadata)
  ad <- cbind2(ad[1,][3], ad[1,][5])
  return(ad)
}
physeq <- ps.f
permanova.forloop.pos.noPlant <- possibly(permanova.forloop.noNestedPlant, otherwise = NA)
out <- map(colnames(physeq@sam_data[,3:111]), permanova.forloop.pos.noPlant)
## Loading required package: vegan
## Loading required package: permute
## Loading required package: lattice
## This is vegan 2.5-6
out.d.noPlant <- do.call("rbind", out)
out.d.noPlant[order(out.d.noPlant$R2, decreasing = TRUE),]
##                               R2 Pr(>F)
## Plant                 0.17075594  0.001
## BineCu                0.07656020  0.001
## BineP                 0.07402408  0.001
## QRTPCR                0.07306023  0.001
## SeedN                 0.07150167  0.001
## SeedP                 0.07004923  0.001
## SeedMg                0.06696187  0.001
## BineS                 0.06617572  0.001
## BineNi                0.06361449  0.001
## BineCo                0.06317789  0.001
## BinePerPlantK         0.06222685  0.001
## BineMg                0.06172737  0.001
## BineM                 0.06065222  0.001
## SeedMo                0.05941339  0.001
## BinePerPlantAl        0.05932040  0.001
## BineSeedPerPlantB     0.05894444  0.001
## BineB                 0.05873916  0.001
## SeedS                 0.05802071  0.001
## NitBine               0.05597057  0.001
## SeedCo                0.05447627  0.001
## BinePerPlantMn        0.05413680  0.001
## SeedCu                0.05397711  0.001
## BineSeedPerPlantNi    0.05357855  0.001
## BineSeedPerPlantMg    0.05300908  0.001
## Mic                   0.05275166  0.001
## Arb                   0.05256082  0.001
## BinePerPlantNi        0.05181934  0.001
## SoilZn                0.05058103  0.001
## BineMn                0.04847053  0.001
## BineAl                0.04795307  0.001
## BinePerPlantCo        0.04775298  0.001
## pH                    0.04724065  0.001
## Al                    0.04709379  0.001
## SeedMn                0.04691304  0.001
## BineSeedM             0.04409116  0.001
## BinePerPlantMg        0.04402702  0.001
## BineCa                0.04263399  0.001
## BineZn                0.04127619  0.001
## SeedMOne              0.03968708  0.001
## NitPerPlant           0.03965970  0.003
## SeedZn                0.03922620  0.004
## SeedNi                0.03917569  0.002
## BineK                 0.03907539  0.003
## BinePerPLantZn        0.03862327  0.001
## BineSeedPerPlantK     0.03810946  0.001
## SeedK                 0.03804667  0.001
## BineFe                0.03784102  0.002
## SeedPerPlantCo        0.03775230  0.002
## BinePerPlantFe        0.03739246  0.001
## BineSeedPerPlantMo    0.03661258  0.001
## SeedFe                0.03646883  0.004
## BineMo                0.03645192  0.001
## BinePerPlantSe        0.03637721  0.003
## BinePerPlantCu        0.03617355  0.003
## SeedPerPlantB         0.03577249  0.003
## BinePerPLantCa        0.03552353  0.002
## SeedPerPlantMo        0.03506122  0.003
## BineSeedPerPlantCo    0.03501755  0.002
## SeedPerPlantMn        0.03454685  0.004
## SeedPerPlantZn        0.03441914  0.002
## BineSeedPerPlantZn    0.03435604  0.003
## SeedPerPlantCa        0.03430083  0.003
## NitSeed               0.03424285  0.003
## SeedM                 0.03362756  0.003
## BinePerPlantMo        0.03338044  0.009
## NitBineSeedPerPlant   0.03267691  0.004
## SeedPerPlantP         0.03228801  0.008
## BineSeedPerPlantCa    0.03173782  0.006
## SeedPerPlantMg        0.03167185  0.005
## BineSeedPerPlantFe    0.03160792  0.004
## SoilAl                0.03160118  0.006
## SeedPerPlantS         0.03135039  0.008
## NitSeedPerPlant       0.03128629  0.007
## SeedPerPlantFe        0.03126599  0.011
## NitSeed15             0.03126430  0.009
## BineSeedPerPlantS     0.03117444  0.010
## SeedPerPlantK         0.03112528  0.012
## Nit15SeedPerPlant     0.03035645  0.012
## BineSeedPerPlantP     0.03034206  0.006
## BinePerPlantB         0.03029081  0.008
## SoilB                 0.02991491  0.011
## SeedAl                0.02985167  0.011
## SeedPerPlantAl        0.02839867  0.017
## BineSeedPerPlantAl    0.02839867  0.021
## BineSeedPerPlantS.1   0.02826067  0.014
## BineSeedPerPlantCu    0.02760383  0.013
## SoilMo                0.02754012  0.013
## SeedPerPlantCu        0.02743183  0.016
## SoilCa                0.02743130  0.026
## SeedPerPlantNi        0.02717142  0.036
## NodPerPlant           0.02610302  0.032
## SoilMg                0.02578881  0.036
## Nit15BineSeedPerPlant 0.02529181  0.036
## NodPerPlant.1         0.02524678  0.034
## SoilK                 0.02518501  0.031
## SoilFe                0.02513551  0.038
## SoilMn                0.02463368  0.053
## Nit15                 0.02457516  0.034
## Inoculation           0.02438306  0.043
## SeedB                 0.02292101  0.082
## BinePerPlantP         0.02213092  0.100
## SoilNi                0.01959758  0.194
## SoilCo                0.01959202  0.186
## Nit15PerPlant         0.01875959  0.235
## SoilCu                0.01833341  0.278
## Ves                   0.01756428  0.331
## SoilP                 0.01712179  0.378
## SoilS                 0.01562212  0.536
## 41                            NA     NA

###PERMANOVA Plant Достоверность линейной вариации бета-разнообразия сообщества(Брей) в зависимости от факторов при разделении по генотипу растений. Description - description Достоверность после пермутаций для Фишера высокая, но низкий коэффицент детерминации(мало объяснённой дисперсии) для большой доли факторов. CCA нецелесообразен.

permanova.forloop <- function(factor){
  require(vegan)
  require(phyloseq)
  dist <- phyloseq::distance(physeq, "bray")
  metadata <- as(sample_data(physeq@sam_data), "data.frame")
  ad <- adonis2(as.formula(paste( "dist ~", "Plant/", factor)), data = metadata)
  ad <- cbind2(ad[2,][3], ad[2,][5])
  return(ad)
}
physeq <- ps.f
permanova.forloop.pos <- possibly(permanova.forloop, otherwise = NA)
out <- map(colnames(physeq@sam_data[,3:111]), permanova.forloop.pos)
out.d <- do.call("rbind", out)
out.d[order(out.d$R2, decreasing = TRUE),]
##                                     R2 Pr(>F)
## Residual                    0.82924406     NA
## Plant:Inoculation           0.10567624  0.001
## Plant:BineSeedPerPlantCa    0.10312438  0.001
## Plant:BinePerPlantB         0.10309824  0.001
## Plant:BinePerPLantZn        0.10080769  0.001
## Plant:NitBineSeedPerPlant   0.10060753  0.001
## Plant:NitSeedPerPlant       0.09742070  0.001
## Plant:Nit15PerPlant         0.09697827  0.002
## Plant:BinePerPlantMg        0.09575624  0.001
## Plant:BinePerPlantMn        0.09431737  0.001
## Plant:BineSeedPerPlantNi    0.09326400  0.001
## Plant:BineK                 0.09249762  0.002
## Plant:BineZn                0.09194542  0.002
## Plant:BineSeedPerPlantK     0.09171721  0.001
## Plant:BinePerPlantFe        0.09071694  0.002
## Plant:BineB                 0.09062160  0.001
## Plant:NitPerPlant           0.09027297  0.001
## Plant:BinePerPlantCo        0.08973200  0.002
## Plant:pH                    0.08970497  0.001
## Plant:Al                    0.08943447  0.001
## Plant:BineMn                0.08886668  0.002
## Plant:BineMg                0.08861357  0.001
## Plant:BineP                 0.08823352  0.003
## Plant:NitBine               0.08810180  0.001
## Plant:BinePerPlantCu        0.08809141  0.004
## Plant:BineCu                0.08730111  0.003
## Plant:NodPerPlant           0.08727612  0.002
## Plant:BineSeedPerPlantS.1   0.08726452  0.002
## Plant:BinePerPlantP         0.08722132  0.001
## Plant:BineSeedM             0.08699548  0.002
## Plant:BinePerPlantNi        0.08562760  0.002
## Plant:BineSeedPerPlantMg    0.08530752  0.002
## Plant:SeedPerPlantS         0.08525114  0.003
## Plant:NitSeed15             0.08522692  0.004
## Plant:BinePerPlantK         0.08427374  0.004
## Plant:SeedZn                0.08340692  0.003
## Plant:Nit15                 0.08300144  0.006
## Plant:BineCo                0.08271660  0.004
## Plant:SeedM                 0.08190432  0.003
## Plant:BineNi                0.08186331  0.007
## Plant:BineMo                0.08168311  0.003
## Plant:BineSeedPerPlantCo    0.08143222  0.007
## Plant:SeedPerPlantMg        0.08126044  0.006
## Plant:BineSeedPerPlantS     0.08119409  0.003
## Plant:SoilNi                0.08091238  0.005
## Plant:SoilMn                0.08074409  0.011
## Plant:BinePerPLantCa        0.08074122  0.005
## Plant:BineSeedPerPlantMo    0.08073668  0.004
## Plant:NodPerPlant.1         0.08022402  0.008
## Plant:BineSeedPerPlantFe    0.08021099  0.008
## Plant:SoilP                 0.08014552  0.008
## Plant:SeedN                 0.07936770  0.007
## Plant:SeedPerPlantMo        0.07918742  0.003
## Plant:BineSeedPerPlantB     0.07895952  0.012
## Plant:Nit15BineSeedPerPlant 0.07892095  0.007
## Plant:BinePerPlantAl        0.07818390  0.015
## Plant:BinePerPlantMo        0.07813564  0.020
## Plant:BineM                 0.07811980  0.009
## Plant:SeedMo                0.07757696  0.012
## Plant:BineSeedPerPlantZn    0.07755556  0.014
## Plant:SeedPerPlantZn        0.07744414  0.010
## Plant:NitSeed               0.07734304  0.015
## Plant:SeedPerPlantK         0.07685454  0.015
## Plant:SeedPerPlantFe        0.07682009  0.021
## Plant:SeedPerPlantB         0.07652472  0.021
## Plant:BineSeedPerPlantCu    0.07611424  0.012
## Plant:SeedPerPlantP         0.07591752  0.013
## Plant:SeedB                 0.07585180  0.016
## Plant:BineCa                0.07503379  0.023
## Plant:SoilCo                0.07387764  0.029
## Plant:BineSeedPerPlantP     0.07386436  0.033
## Plant:SeedPerPlantCu        0.07381266  0.027
## Plant:SoilFe                0.07325843  0.033
## Plant:BineAl                0.07310608  0.031
## Plant:SoilAl                0.07270873  0.033
## Plant:SeedMOne              0.07223417  0.049
## Plant:SoilS                 0.07153259  0.042
## Plant:SoilMo                0.07127906  0.043
## Plant:Arb                   0.07125478  0.058
## Plant:BineFe                0.07124595  0.045
## Plant:BineS                 0.07109973  0.063
## Plant:Mic                   0.07108358  0.043
## Plant:SeedPerPlantAl        0.06792219  0.096
## Plant:BineSeedPerPlantAl    0.06792219  0.106
## Plant:BinePerPlantSe        0.06786741  0.104
## Plant:SeedPerPlantCo        0.06670524  0.120
## Plant:SeedFe                0.06629690  0.128
## Plant:SeedS                 0.06627485  0.129
## Plant:SoilB                 0.06596593  0.150
## Plant:SeedPerPlantNi        0.06572613  0.146
## Plant:SeedPerPlantCa        0.06569051  0.143
## Plant:SoilZn                0.06472316  0.208
## Plant:SeedMg                0.06466667  0.196
## Plant:SeedNi                0.06420806  0.186
## Plant:SoilCa                0.06355515  0.198
## Plant:SeedPerPlantMn        0.06242943  0.231
## Plant:QRTPCR                0.06180398  0.287
## Plant:SeedMn                0.06166013  0.289
## Plant:SeedCo                0.06044735  0.339
## Plant:Nit15SeedPerPlant     0.05938731  0.376
## Plant:SeedK                 0.05916504  0.416
## Plant:Ves                   0.05728376  0.503
## Plant:SeedAl                0.05596183  0.578
## Plant:SeedCu                0.05515625  0.636
## Plant:SeedP                 0.05224552  0.797
## Plant:SoilCu                0.05116867  0.806
## Plant:SoilK                 0.04978848  0.893
## Plant:SoilMg                0.04925077  0.911
## 41                                  NA     NA

###Preprocessing tree

beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
  require(phyloseq)
  require(ggplot2)
  require(ggpubr)
  require(DESeq2)
  library(ggforce)
  
  
  # beta_NMDS <- function(){
  #normalisation. unifrac - rarefaction; wunifrac,bray - varstab
  
  diagdds = phyloseq_to_deseq2(ps, ~ Description)                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  if (normtype =="vst")
    pst <- varianceStabilizingTransformation(diagdds)
  if (normtype =="log") 
    pst <- rlogTransformation(diagdds)
  
  pst.dimmed <- t(as.matrix(assay(pst))) 
  pst.dimmed[pst.dimmed < 0.0] <- 0.0
  ps.varstab <- ps
  otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE) 
  
  ps.rand <- rarefy_even_depth(ps, rngseed = seed)
  
  #beta and ordination
  
  ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
  ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
  ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
  
  #plotting
  p1 = plot_ordination(ps, ordination.b, type="sample", color="Description", title="NMDS - Bray", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) +
    geom_mark_ellipse(aes(group = Description, label = Description), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
  
  p2 = plot_ordination(ps, ordination.u, type="sample", color="Description", title="NMDS - unifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) +
    geom_mark_ellipse(aes(group = Description, label = Description), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
  
  p3 = plot_ordination(ps, ordination.w, type="sample", color="Description", title="NMDS - wunifrac", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) + 
    geom_mark_ellipse(aes(group = Description, label = Description), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
  
  #merge by ggpubr
  
  p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, legend = "none", font.label = list(size = 12, face = "bold", color ="black"))
  
  return(p.all)
}

beta_custom_norm_NMDS_elli(ps.f.s7307)

physeq <- ps.f.s7307
permanova.forloop.pos.noPlant <- possibly(permanova.forloop.noNestedPlant, otherwise = NA)
out <- map(colnames(physeq@sam_data[,3:111]), permanova.forloop.pos.noPlant)
out.d.noPlant <- do.call("rbind", out)
out.d.noPlant[order(out.d.noPlant$R2, decreasing = TRUE),]
##                               R2 Pr(>F)
## Nit15                 0.14429270  0.001
## BinePerPlantMn        0.14351601  0.001
## Al                    0.14273728  0.001
## BineMn                0.14267536  0.002
## BineMo                0.14026601  0.001
## SeedPerPlantMo        0.13956186  0.001
## BineSeedPerPlantNi    0.13913638  0.001
## BineZn                0.13871687  0.002
## SeedMo                0.13827755  0.001
## BinePerPlantMo        0.13762085  0.001
## BinePerPLantZn        0.13612224  0.002
## BineMg                0.13596639  0.001
## NitBine               0.13365037  0.001
## SoilFe                0.13256085  0.001
## pH                    0.13203859  0.001
## SeedPerPlantMg        0.13019866  0.001
## BineB                 0.13010512  0.002
## SeedM                 0.12962441  0.001
## BineCo                0.12940760  0.002
## SoilAl                0.12932760  0.001
## SeedN                 0.12914106  0.001
## BinePerPlantMg        0.12904541  0.002
## NitSeed15             0.12805301  0.001
## Nit15PerPlant         0.12749082  0.001
## SoilMo                0.12394203  0.001
## BineSeedPerPlantP     0.12370146  0.003
## BinePerPlantB         0.12132397  0.001
## BineSeedPerPlantCa    0.12121921  0.002
## SeedPerPlantS         0.12059291  0.003
## NitSeedPerPlant       0.12037305  0.002
## SeedPerPlantAl        0.11803325  0.001
## BineSeedPerPlantAl    0.11803325  0.003
## BineNi                0.11741726  0.003
## BineK                 0.11685152  0.002
## NitBineSeedPerPlant   0.11613362  0.003
## BineSeedM             0.11337527  0.003
## BineP                 0.11141178  0.003
## Nit15BineSeedPerPlant 0.10698543  0.009
## BineSeedPerPlantS     0.10697161  0.007
## BineAl                0.10686531  0.004
## SeedPerPlantP         0.10648852  0.008
## SoilB                 0.10469707  0.007
## SeedPerPlantCu        0.10459310  0.006
## BineSeedPerPlantCu    0.10391610  0.014
## Arb                   0.10267653  0.015
## SeedPerPlantK         0.09815841  0.014
## NodPerPlant           0.09586943  0.025
## BineSeedPerPlantFe    0.09465462  0.029
## SeedMn                0.09456568  0.041
## SeedPerPlantFe        0.09173730  0.036
## BinePerPlantCo        0.09109106  0.039
## BineCu                0.09017547  0.047
## SeedZn                0.08943917  0.054
## Mic                   0.08847640  0.056
## BineSeedPerPlantB     0.08840077  0.061
## BinePerPlantAl        0.08802505  0.063
## SeedMOne              0.08763536  0.050
## NitSeed               0.08755915  0.056
## SoilP                 0.08751893  0.070
## Nit15SeedPerPlant     0.08744662  0.056
## BinePerPlantCu        0.08725060  0.075
## SeedCa                0.08538919  0.059
## SeedPerPlantNi        0.08533916  0.067
## BineSeedPerPlantMo    0.08468381  0.088
## SoilS                 0.08367008  0.091
## QRTPCR                0.08366397  0.081
## SeedPerPlantCo        0.08282397  0.099
## SoilMn                0.08157065  0.114
## BineFe                0.08047536  0.128
## NitPerPlant           0.07990730  0.122
## SeedPerPlantB         0.07883850  0.140
## BinePerPlantP         0.07853045  0.156
## BinePerPlantNi        0.07702555  0.165
## SeedFe                0.07620636  0.178
## Inoculation           0.07495405  0.189
## SeedPerPlantCa        0.07467086  0.200
## BineSeedPerPlantS.1   0.07459902  0.199
## SeedNi                0.07431947  0.200
## BineCa                0.07419084  0.216
## SeedPerPlantMn        0.07309231  0.261
## SeedAl                0.07207949  0.265
## SeedCo                0.07198667  0.259
## SeedS                 0.07195090  0.277
## SoilNi                0.07175894  0.261
## SeedMg                0.07145025  0.286
## BinePerPlantK         0.07087492  0.295
## BineM                 0.07080377  0.282
## BinePerPlantFe        0.07066518  0.296
## SoilCo                0.07038723  0.322
## BineSeedPerPlantMg    0.06938492  0.330
## Ves                   0.06869172  0.372
## BineSeedPerPlantK     0.06867123  0.358
## SeedB                 0.06846567  0.380
## SoilCa                0.06764562  0.390
## BineSeedPerPlantZn    0.06641741  0.418
## SeedPerPlantZn        0.06612233  0.449
## BineS                 0.06480913  0.471
## BinePerPlantSe        0.05953971  0.676
## SeedP                 0.05840058  0.730
## SeedK                 0.05839217  0.733
## SoilK                 0.05815521  0.764
## SoilMg                0.05815521  0.767
## BineSeedPerPlantCo    0.05807223  0.757
## SeedCu                0.05773137  0.767
## BinePerPLantCa        0.05640948  0.833
## NodPerPlant.1         0.05630432  0.840
## SoilCu                0.05454111  0.879
## SoilZn                0.05215041  0.937
## 1                             NA     NA

####Shitty alpha violins

library(ggpubr)
alpha.custom <- function(ps.f.i, arrga = "PD"){
  require(picante)
  pd <- pd(ps.f.i@otu_table@.Data, ps.f.i@phy_tree)
  
  pd1 <- estimate_richness(ps.f.i, measures=c("Observed", "InvSimpson", "Shannon"))
  pd <- cbind(pd,ps.f.i@sam_data, pd1 )
  
  bmi <- levels(as.factor(pd$Description))
  bmi.pairs <- combn(seq_along(bmi), 2, simplify = FALSE, FUN = function(i)bmi[i])
  p1 <- ggviolin(pd, x = "Description", y = arrga,
                 add = "boxplot", fill = "Description") + stat_compare_means(comparisons = bmi.pairs, method = "wilcox.test") +
    scale_x_discrete(limits = c("s7307","s7307_In",  "s7307_Al",  "s7307_In_Al")) + theme(axis.title.x = element_blank(), legend.title = element_blank())
  return(p1)
}

p.alpha.Cdt.oo <- alpha.custom(physeq, arrga = "Observed")
## Loading required package: picante
## Loading required package: ape
## 
## Attaching package: 'ape'
## The following object is masked from 'package:ggpubr':
## 
##     rotate
## Loading required package: nlme
## 
## Attaching package: 'nlme'
## The following object is masked from 'package:IRanges':
## 
##     collapse
## The following object is masked from 'package:dplyr':
## 
##     collapse
p.alpha.Cdt.sh <- alpha.custom(physeq, arrga = "Shannon")
p.alpha.Cdt.is <- alpha.custom(physeq, arrga = "InvSimpson")
p.alpha.Cdt.pd <- alpha.custom(physeq, arrga = "PD")


p1 <- ggarrange(p.alpha.Cdt.oo, p.alpha.Cdt.sh,p.alpha.Cdt.is, p.alpha.Cdt.pd , ncol = 4 ,label.x = 0.105, nrow = 1, common.legend = TRUE)
p1

###Split dataset by Al and In

physeq <- subset_taxa(physeq, !is.na(Phylum))


physeq.In <- prune_samples(sample_data(physeq)$Inoculation %in% c("+"), physeq)
physeq.In  <- prune_taxa(taxa_sums(physeq.In) > 0, physeq.In)

physeq.wIn <- prune_samples(sample_data(physeq)$Inoculation %in% c("-"), physeq)
physeq.wIn  <- prune_taxa(taxa_sums(physeq.wIn) > 0, physeq.wIn)

####Correct Al/In meta

physeq.In@sam_data$Al <- c("neg", "neg", "neg", "neg", "pos", "pos", "pos", "pos")
physeq.wIn@sam_data$Al <- c("neg", "neg", "neg", "neg", "pos", "pos", "pos", "pos")

####Improve on des function - add a required factor(with as.formula function)

des_w_simper <- function(ps, factor){
  require(DESeq2)
  require(vegan)
  require(tibble)
  require(phyloseq)
  
  diagdds = phyloseq_to_deseq2(ps, as.formula(paste( "~", factor)))                  
  diagdds = estimateSizeFactors(diagdds, type="poscounts")
  diagdds = estimateDispersions(diagdds, fitType = "local") 
  diagdds = DESeq(diagdds)
  samp <-sample_data(ps)
  aggdata <- t(aggregate.data.frame(as.data.frame(as.data.frame(t(diagdds@assays@data$mu))), by=list(samp[[factor]]), median))
  colnames(aggdata) <- aggdata[1,]
  aggdata <- aggdata[-1,]
  res = results(diagdds)
  res.df <- as.data.frame(res)
  nice <- cbind(res.df, as.data.frame(ps@tax_table@.Data[rownames(res.df),]), as.data.frame(aggdata)[rownames(res.df),])
} 

des.In <- des_w_simper(physeq.In, "Al")
## Warning in DESeqDataSet(se, design = design, ignoreRank): some variables in
## design formula are characters, converting to factors
des.wIn <- des_w_simper(physeq.wIn, "Al")
## Warning in DESeqDataSet(se, design = design, ignoreRank): some variables in
## design formula are characters, converting to factors

####filtration ASVs in the DESeq2 result tables by abundanse and change confidence level После порога по среденему значению 60 ридов после нормирования и p-value с поправкой на множественное сравнение: - для горизонта ay - 37 отличающихся филотипа - для горизонта с - 47 отличающихся филотипа

filter.des <- function(des, alpha=0.1, baseMean = 15){
  des <- des[(des$padj < alpha), ]
  des <- des[(des$baseMean > baseMean),]
  #des <- des[(des$log2FoldChange > 0),]
  des <-  des[(is.na(des$padj) != TRUE),]
  return(des)
}
alpha.c <- 0.1
baseMean.c <- 15
des.In.filt <- filter.des(des.In, alpha = alpha.c, baseMean = baseMean.c)
len.c <- length(rownames(des.In.filt))
paste0("length des.In after filtation with param: alpha - ", alpha.c, ", baseMean - ", baseMean.c, " ==> ", len.c)
## [1] "length des.In after filtation with param: alpha - 0.1, baseMean - 15 ==> 21"
alpha.ay <- 0.1
baseMean.ay <- 15
des.wIn.filt <- filter.des(des.wIn, alpha = alpha.ay, baseMean = baseMean.ay)
len.ay <- length(rownames(des.wIn.filt))
paste0("length des.wIn  after filtation with param: alpha - ", alpha.ay, ", baseMean - ", baseMean.ay, " ==> ", len.ay)
## [1] "length des.wIn  after filtation with param: alpha - 0.1, baseMean - 15 ==> 31"

####Tree for soil changed taxa

list.both <- c(rownames(des.In.filt), rownames(des.wIn.filt)) 
ps.changed <- prune_taxa(list.both, physeq)
phyloseq <- ps.changed
library(ggtree)
library(tidyverse)
tree <- phyloseq@phy_tree
taxa.pruned <- as.data.frame(phyloseq@tax_table@.Data)
taxa.pruned <- taxa.pruned %>%  mutate_all(as.character)
old.tips <- tree$tip.label
matches <- regmatches(tree$tip.label, gregexpr("[[:digit:]]+", tree$tip.label))
taxa.pruned$number <- as.numeric(unlist(matches))
taxa.pruned$taxa <- ifelse(is.na(taxa.pruned$Genus), taxa.pruned$Family, taxa.pruned$Genus)
taxa.pruned[taxa.pruned == "Burkholderia-Caballeronia-Paraburkholderia"] <- "Burkholderia"
taxa.pruned[taxa.pruned == "Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium"] <- "Pararhizobium"
taxa.pruned$taxa2 <- ifelse(is.na(taxa.pruned$Species), with(taxa.pruned, paste0(taxa)), with(taxa.pruned, paste0(taxa, " ", Species )))
taxa.pruned$taxa3 <- ifelse(taxa.pruned$Phylum == "Proteobacteria", with(taxa.pruned, paste0(taxa.pruned$number, ".", taxa2, " // ", Class)), with(taxa.pruned, paste0(taxa.pruned$number, ".", taxa2, " // ", Phylum)))
tree$tip.label <- taxa.pruned$taxa3
p <- ggtree(tree, ladderize = F) + geom_tiplab(mapping = aes(), align=TRUE, linesize=.5) + xlim(NA, 4)
## Warning: `data_frame()` is deprecated as of tibble 1.1.0.
## Please use `tibble()` instead.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_warnings()` to see where this warning was generated.
## Warning: `mutate_()` is deprecated as of dplyr 0.7.0.
## Please use `mutate()` instead.
## See vignette('programming') for more help
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_warnings()` to see where this warning was generated.
des.wIn

####Add log2FoldChange for tree. Red - prevalence in CZ, blue - in SP.

t.ay <- as_tibble(des.wIn, rownames = "id") %>% 
  filter(id %in% phyloseq@phy_tree$tip.label)%>% 
  select(id, log2FoldChange)  %>%  
  dplyr::rename(notIn = log2FoldChange)

t.c <- as_tibble(des.In, rownames = "id") %>% 
  filter(id %in% phyloseq@phy_tree$tip.label) %>% 
  select(id, log2FoldChange) %>%  
  dplyr::rename(In = log2FoldChange)

t.all <- full_join(t.ay, t.c)

names.d <-  cbind(long = tree$tip.label, short = old.tips) %>% data.frame(row.names = "short")
t.names <- as_tibble(names.d, rownames = "id")
d.all.tips <- full_join(t.names, t.all) %>%  select(-c(id)) %>% 
  as.data.frame() %>% column_to_rownames("long")

p2 <- gheatmap(p, d.all.tips, offset=2, width=0.8)  + scale_colour_gradientn(colours = c("blue", "white", "red"),na.value = "grey50", guide = "colourbar",aesthetics = "fill") 
p2 <- p2 + labs(fill = "L2FC without Al/ Al")
otus.ay.rel <- t(apply(otu_table(physeq.wIn), 1, function(x) x / sum(x)))
otus.c.rel <- t(apply(otu_table(physeq.In), 1, function(x) x / sum(x)))
# for ay
as_tibble(t(otus.ay.rel ), rownames = "id" ) %>% 
  filter(id %in% phyloseq@phy_tree$tip.label) %>%
  select(id) -> id.ay
as_tibble(t(otus.ay.rel), rownames = "id" ) %>% 
  filter(id %in% phyloseq@phy_tree$tip.label) %>%
  select_if(is.numeric) %>% 
  replace(is.na(.), 0) %>% 
  mutate(ayMean=rowMeans(.)) %>% 
  select(ayMean) -> res.ay
res.ayMean.rel <- cbind2(id.ay,res.ay)

# for c
as_tibble(t(otus.c.rel), rownames = "id" ) %>% 
  filter(id %in% phyloseq@phy_tree$tip.label) %>%
  select(id) -> id.c
as_tibble(t(otus.c.rel), rownames = "id" ) %>% 
  filter(id %in% phyloseq@phy_tree$tip.label) %>%
  select_if(is.numeric) %>% 
  replace(is.na(.), 0) %>% 
  mutate(cMean=rowMeans(.)) %>% 
  select(cMean) -> res.c
res.cMean.rel <- cbind2(id.c, res.c)


all.resMean.rel <- full_join(res.ayMean.rel, res.cMean.rel)
all.resMean.rel %>% replace(is.na(.), 0) -> all.resMean.rel
all.resMean.rel$ayMean <- 0 - all.resMean.rel$ayMean
all.resMean.rel.melted <- reshape2::melt(all.resMean.rel, id=c("id"))

library(reshape2)
library(ggstance)
all.resMean.rel.melted <- melt(all.resMean.rel, id=c("id"))
first.tree <- phyloseq@phy_tree
ids.tree <-  data.frame(id = first.tree$tip.label, id.taxa = tree$tip.label)
some.join <- full_join(ids.tree, all.resMean.rel.melted)
some.join <- subset(some.join, select = -c(id))
some.join["numbers"] <-  ifelse(some.join$value == 0, NA, abs(some.join$value))
some.join$value <- some.join$value*100
some.join["position"] <-  ifelse(some.join$value >= 0, some.join$value + 0.5, some.join$value - 0.5)
p4 <- facet_plot(p2, panel = "no / In", data = some.join,  geom = geom_barh, 
                 mapping = aes(x = value, label=value), color = "salmon", fill = "white",
                 stat='identity')
## Warning: Ignoring unknown aesthetics: label
p4 <- facet_plot(p4, geom=geom_text , data = some.join, mapping=aes(x=position,label=round(numbers*100, digits = 2)), panel = "no / In")

library(gtable)
library(grid)
gt <-  ggplot_gtable(ggplot_build(p4))
gt$widths[7] <-  0.5*gt$widths[7] # in this case it was colmun 7 - reduce the width by a half
plot(gt) # plot with grid draw

export data to rf analisys

So many beta plots

without normalisation PCoA

ordination.pure <- phyloseq::ordinate(ps.f, "PCoA", "bray")
p.b.br.wn.pcoa <- plot_ordination(ps.f, ordination.pure, type="sample", color="pH", title="PCoA - Bray -without normalisation", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
  geom_point(size = 3) +
  geom_text_repel(label = rownames(ordination.pure$vectors), size = 3)
p.b.br.wn.pcoa

without normalisation NMDS

ordination.pure <- phyloseq::ordinate(ps.f, "NMDS", "bray")
## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.1224277 
## Run 1 stress 0.1363156 
## Run 2 stress 0.1346682 
## Run 3 stress 0.1343889 
## Run 4 stress 0.1388261 
## Run 5 stress 0.1330684 
## Run 6 stress 0.1274912 
## Run 7 stress 0.1348295 
## Run 8 stress 0.1429004 
## Run 9 stress 0.1288148 
## Run 10 stress 0.1241632 
## Run 11 stress 0.1277002 
## Run 12 stress 0.13639 
## Run 13 stress 0.1364752 
## Run 14 stress 0.1415925 
## Run 15 stress 0.1458307 
## Run 16 stress 0.128854 
## Run 17 stress 0.1385411 
## Run 18 stress 0.1274619 
## Run 19 stress 0.1368249 
## Run 20 stress 0.1405491 
## *** No convergence -- monoMDS stopping criteria:
##      4: no. of iterations >= maxit
##     16: stress ratio > sratmax
p.b.br.wn.nmds <- plot_ordination(ps.f, ordination.pure, type="sample", color="pH", title="NMDS - Bray - without normalisation", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
  geom_point(size = 3) +
  geom_text_repel(label = rownames(ordination.pure$points), size = 3)
p.b.br.wn.nmds

VST - design - repeats NMDS

physeq <- ps.f
veganifyOTU <- function(physeq){
  require(phyloseq)
  if(taxa_are_rows(physeq)){physeq <- t(physeq)}
  return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
otus <- t(otus)
deseq_counts_by_desc <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Description) 
## converting counts to integer mode
deseq_counts_vst_by_desc <- varianceStabilizingTransformation(deseq_counts_by_desc)
vst_trans_count_tab_descr <- assay(deseq_counts_vst_by_desc)
otu.table.desc <- otu_table(vst_trans_count_tab_descr, taxa_are_rows = TRUE)
ps.vst.desc <- physeq
otu_table(ps.vst.desc) <- otu.table.desc
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
ordination.vst.desc <- ordinate(ps.vst.desc, "PCoA", "bray")
p.b.br.vstr.pcoa <- plot_ordination(ps.vst.desc, ordination.vst.desc, type="sample", color="pH", title="PCoA - Bray - ~ Description", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
  geom_point(size = 3) +
  geom_text_repel(label = rownames(ordination.vst.desc$vectors), size = 3) 
p.b.br.vstr.pcoa 

VST - design - repeats NMDS

physeq <- ps.f
veganifyOTU <- function(physeq){
  require(phyloseq)
  if(taxa_are_rows(physeq)){physeq <- t(physeq)}
  return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
otus <- t(otus)
deseq_counts_by_desc <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Description) 
## converting counts to integer mode
deseq_counts_vst_by_desc <- varianceStabilizingTransformation(deseq_counts_by_desc)
vst_trans_count_tab_descr <- assay(deseq_counts_vst_by_desc)
otu.table.desc <- otu_table(vst_trans_count_tab_descr, taxa_are_rows = TRUE)
ps.vst.desc <- physeq
otu_table(ps.vst.desc) <- otu.table.desc
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
ordination.vst.desc <- ordinate(ps.vst.desc, "NMDS", "bray")
## Wisconsin double standardization
## Run 0 stress 0.1301042 
## Run 1 stress 0.1345922 
## Run 2 stress 0.1330047 
## Run 3 stress 0.1381194 
## Run 4 stress 0.1282931 
## ... New best solution
## ... Procrustes: rmse 0.0257102  max resid 0.183079 
## Run 5 stress 0.134153 
## Run 6 stress 0.1356824 
## Run 7 stress 0.1297012 
## Run 8 stress 0.1441967 
## Run 9 stress 0.1414356 
## Run 10 stress 0.1318752 
## Run 11 stress 0.1391108 
## Run 12 stress 0.1373792 
## Run 13 stress 0.1398737 
## Run 14 stress 0.1347249 
## Run 15 stress 0.132055 
## Run 16 stress 0.1419963 
## Run 17 stress 0.1323084 
## Run 18 stress 0.1318745 
## Run 19 stress 0.1402303 
## Run 20 stress 0.1411863 
## *** No convergence -- monoMDS stopping criteria:
##     20: stress ratio > sratmax
p.b.br.vstr.nmds <- plot_ordination(ps.vst.desc, ordination.vst.desc, type="sample", color="pH", title="NMDS - Bray - ~ Description", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
  geom_point(size = 3) +
  geom_text_repel(label = rownames(ordination.vst.desc$points), size = 3) 
p.b.br.vstr.nmds 

VST - design - full PCoA

physeq <- ps.f
veganifyOTU <- function(physeq){
  require(phyloseq)
  if(taxa_are_rows(physeq)){physeq <- t(physeq)}
  return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
levels(meta$Al) <- c("pos", "neg")
levels(meta$Inoculation) <- c("pos", "neg")
otus <- t(otus)
deseq_counts_by_compl <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Plant/Al + Plant/Inoculation) 
## converting counts to integer mode
deseq_counts_vst_by_compl <- varianceStabilizingTransformation(deseq_counts_by_compl)
vst_trans_count_tab_complr <- assay(deseq_counts_vst_by_compl)
otu.table.compl <- otu_table(vst_trans_count_tab_complr, taxa_are_rows = TRUE)
ps.vst.compl <- physeq
otu_table(ps.vst.compl) <- otu.table.compl
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
ordination.vst.compl <- ordinate(ps.vst.compl, "PCoA", "bray")
p.b.br.vstf.pcoa <- plot_ordination(ps.vst.compl, ordination.vst.compl, type="sample", color="pH", title="PCoA - Bray - VST -  ~ Plant/Al + Plant/Inoculation", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
  geom_point(size = 3) +
  geom_text_repel(label = rownames(ordination.vst.compl$vectors), size = 3) 
p.b.br.vstf.pcoa

VST - design - full NMDS

physeq <- ps.f
veganifyOTU <- function(physeq){
  require(phyloseq)
  if(taxa_are_rows(physeq)){physeq <- t(physeq)}
  return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
levels(meta$Al) <- c("pos", "neg")
levels(meta$Inoculation) <- c("pos", "neg")
otus <- t(otus)
deseq_counts_by_compl <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Plant/Al + Plant/Inoculation) 
## converting counts to integer mode
deseq_counts_vst_by_compl <- varianceStabilizingTransformation(deseq_counts_by_compl)
vst_trans_count_tab_complr <- assay(deseq_counts_vst_by_compl)
otu.table.compl <- otu_table(vst_trans_count_tab_complr, taxa_are_rows = TRUE)
ps.vst.compl <- physeq
otu_table(ps.vst.compl) <- otu.table.compl
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
## Also defined by 'tidytree'
ordination.vst.compl <- ordinate(ps.vst.compl, "NMDS", "bray")
## Wisconsin double standardization
## Run 0 stress 0.1301042 
## Run 1 stress 0.1490941 
## Run 2 stress 0.1306728 
## Run 3 stress 0.1456589 
## Run 4 stress 0.1387911 
## Run 5 stress 0.1383484 
## Run 6 stress 0.1461985 
## Run 7 stress 0.1307298 
## Run 8 stress 0.1484943 
## Run 9 stress 0.138543 
## Run 10 stress 0.1308612 
## Run 11 stress 0.1351823 
## Run 12 stress 0.145198 
## Run 13 stress 0.1441977 
## Run 14 stress 0.1388006 
## Run 15 stress 0.1387027 
## Run 16 stress 0.1400576 
## Run 17 stress 0.1409418 
## Run 18 stress 0.1426537 
## Run 19 stress 0.132693 
## Run 20 stress 0.1430562 
## *** No convergence -- monoMDS stopping criteria:
##     20: stress ratio > sratmax
p.b.br.vstf.nmds <- plot_ordination(ps.vst.compl, ordination.vst.compl, type="sample", color="pH", title="NMDS - Bray - VST -  ~ Plant/Al + Plant/Inoculation", 
                       axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
  geom_point(size = 3) +
  geom_text_repel(label = rownames(ordination.vst.compl$points), size = 3) 
p.b.br.vstf.nmds 

all beta in one beta

ggarrange(p.b.br.wn.pcoa , p.b.br.vstr.pcoa, p.b.br.vstf.pcoa, p.b.br.wn.nmds, p.b.br.vstr.nmds, p.b.br.vstf.nmds, ncol = 3 , nrow = 2, common.legend = TRUE , font.label = list(size = 12, face = "bold", color ="black"))

reads/otus plot

plot_rich_reads_samlenames_lm <- function(ps.f){
  rish <- estimate_richness(ps.f, measures = "Observed")
  reads.sum <- as.data.frame(sample_sums(ps.f))
  reads.summary <- cbind(rish, reads.sum)
  colnames(reads.summary) <- c("otus","reads")
  reads.summary["Description"] <- rownames(ps.f@sam_data)
  reads.summary["Repeats"] <- ps.f@sam_data$Description
  reads.summary["Plant"] <- ps.f@sam_data$Plant
  
  library(ggrepel)
  require(ggforce)
  p1 <- ggplot(data=reads.summary) + geom_point(aes(y=otus, x=log2(reads), color=Repeats),size=3) +  geom_text_repel(aes(y=otus, x=log2(reads), label=Description, colour = Repeats)) + theme_bw() +
    geom_smooth(aes(y=otus, x=log2(reads), fill=Repeats, color=Repeats),method=lm, se=FALSE, ymin = 1) + scale_x_continuous(sec.axis = sec_axis(sec.axis ~ 2**.)) 
  # geom_mark_ellipse(aes(y = otus, x=reads, group = Repeats, label = Repeats, color = Repeats), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
  
  return(p1)
}
plot_rich_reads_samlenames_lm(ps.f)

betadispr

Bray VST by full model normalisation

dist <- phyloseq::distance(ps.vst.compl, method = "bray", type = "samples")
groups <- ps.vst.compl@sam_data$Description
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)

TukeyHSD(mod)
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                                  diff           lwr           upr     p adj
## s1903_Al-s1903          -1.209882e-03 -4.223088e-03  1.803325e-03 0.9822115
## s1903_In-s1903          -1.115728e-03 -4.128934e-03  1.897479e-03 0.9916545
## s1903_In_Al-s1903       -6.753881e-04 -3.688595e-03  2.337819e-03 0.9999727
## s7307-s1903             -1.298378e-03 -4.311585e-03  1.714829e-03 0.9672230
## s7307_Al-s1903          -2.759578e-03 -5.772785e-03  2.536289e-04 0.1052013
## s7307_In-s1903          -1.677321e-03 -4.690528e-03  1.335886e-03 0.8027699
## s7307_In_Al-s1903       -2.454673e-03 -5.467880e-03  5.585336e-04 0.2299732
## s8353-s1903             -1.664416e-03 -4.677623e-03  1.348791e-03 0.8112249
## s8353_Al-s1903          -3.620337e-03 -6.633544e-03 -6.071302e-04 0.0065438
## s8353_In-s1903          -5.012079e-04 -3.514415e-03  2.511999e-03 0.9999995
## s8353_In_Al-s1903       -6.214141e-03 -9.904551e-03 -2.523731e-03 0.0000235
## s8473-s1903             -6.321445e-04 -3.645351e-03  2.381062e-03 0.9999883
## s8473_Al-s1903          -1.055240e-03 -4.068447e-03  1.957967e-03 0.9951981
## s8473_In-s1903          -3.308878e-03 -6.563513e-03 -5.424269e-05 0.0427855
## s8473_In_Al-s1903       -1.631902e-03 -4.645109e-03  1.381305e-03 0.8317173
## s1903_In-s1903_Al        9.415419e-05 -2.919053e-03  3.107361e-03 1.0000000
## s1903_In_Al-s1903_Al     5.344936e-04 -2.478713e-03  3.547700e-03 0.9999987
## s7307-s1903_Al          -8.849638e-05 -3.101703e-03  2.924710e-03 1.0000000
## s7307_Al-s1903_Al       -1.549696e-03 -4.562903e-03  1.463511e-03 0.8779697
## s7307_In-s1903_Al       -4.674395e-04 -3.480646e-03  2.545767e-03 0.9999998
## s7307_In_Al-s1903_Al    -1.244791e-03 -4.257998e-03  1.768415e-03 0.9771162
## s8353-s1903_Al          -4.545341e-04 -3.467741e-03  2.558673e-03 0.9999999
## s8353_Al-s1903_Al       -2.410455e-03 -5.423662e-03  6.027515e-04 0.2545735
## s8353_In-s1903_Al        7.086738e-04 -2.304533e-03  3.721881e-03 0.9999497
## s8353_In_Al-s1903_Al    -5.004259e-03 -8.694669e-03 -1.313850e-03 0.0011658
## s8473-s1903_Al           5.777372e-04 -2.435470e-03  3.590944e-03 0.9999964
## s8473_Al-s1903_Al        1.546417e-04 -2.858565e-03  3.167848e-03 1.0000000
## s8473_In-s1903_Al       -2.098996e-03 -5.353632e-03  1.155639e-03 0.5995973
## s8473_In_Al-s1903_Al    -4.220204e-04 -3.435227e-03  2.591186e-03 1.0000000
## s1903_In_Al-s1903_In     4.403394e-04 -2.572867e-03  3.453546e-03 0.9999999
## s7307-s1903_In          -1.826506e-04 -3.195857e-03  2.830556e-03 1.0000000
## s7307_Al-s1903_In       -1.643850e-03 -4.657057e-03  1.369356e-03 0.8243244
## s7307_In-s1903_In       -5.615937e-04 -3.574800e-03  2.451613e-03 0.9999976
## s7307_In_Al-s1903_In    -1.338946e-03 -4.352152e-03  1.674261e-03 0.9578514
## s8353-s1903_In          -5.486883e-04 -3.561895e-03  2.464519e-03 0.9999982
## s8353_Al-s1903_In       -2.504609e-03 -5.517816e-03  5.085974e-04 0.2042579
## s8353_In-s1903_In        6.145196e-04 -2.398687e-03  3.627726e-03 0.9999919
## s8353_In_Al-s1903_In    -5.098414e-03 -8.788823e-03 -1.408004e-03 0.0008686
## s8473-s1903_In           4.835831e-04 -2.529624e-03  3.496790e-03 0.9999997
## s8473_Al-s1903_In        6.048752e-05 -2.952719e-03  3.073694e-03 1.0000000
## s8473_In-s1903_In       -2.193150e-03 -5.447786e-03  1.061485e-03 0.5277923
## s8473_In_Al-s1903_In    -5.161746e-04 -3.529381e-03  2.497032e-03 0.9999992
## s7307-s1903_In_Al       -6.229900e-04 -3.636197e-03  2.390217e-03 0.9999904
## s7307_Al-s1903_In_Al    -2.084190e-03 -5.097397e-03  9.290170e-04 0.4841391
## s7307_In-s1903_In_Al    -1.001933e-03 -4.015140e-03  2.011274e-03 0.9971899
## s7307_In_Al-s1903_In_Al -1.779285e-03 -4.792492e-03  1.233922e-03 0.7303249
## s8353-s1903_In_Al       -9.890277e-04 -4.002234e-03  2.024179e-03 0.9975500
## s8353_Al-s1903_In_Al    -2.944949e-03 -5.958156e-03  6.825793e-05 0.0615298
## s8353_In-s1903_In_Al     1.741802e-04 -2.839027e-03  3.187387e-03 1.0000000
## s8353_In_Al-s1903_In_Al -5.538753e-03 -9.229163e-03 -1.848343e-03 0.0002136
## s8473-s1903_In_Al        4.324363e-05 -2.969963e-03  3.056450e-03 1.0000000
## s8473_Al-s1903_In_Al    -3.798519e-04 -3.393059e-03  2.633355e-03 1.0000000
## s8473_In-s1903_In_Al    -2.633490e-03 -5.888125e-03  6.211454e-04 0.2389711
## s8473_In_Al-s1903_In_Al -9.565140e-04 -3.969721e-03  2.056693e-03 0.9982892
## s7307_Al-s7307          -1.461200e-03 -4.474407e-03  1.552007e-03 0.9182637
## s7307_In-s7307          -3.789431e-04 -3.392150e-03  2.634264e-03 1.0000000
## s7307_In_Al-s7307       -1.156295e-03 -4.169502e-03  1.856912e-03 0.9882673
## s8353-s7307             -3.660377e-04 -3.379244e-03  2.647169e-03 1.0000000
## s8353_Al-s7307          -2.321959e-03 -5.335166e-03  6.912479e-04 0.3089165
## s8353_In-s7307           7.971702e-04 -2.216037e-03  3.810377e-03 0.9997872
## s8353_In_Al-s7307       -4.915763e-03 -8.606173e-03 -1.225353e-03 0.0015341
## s8473-s7307              6.662336e-04 -2.346973e-03  3.679440e-03 0.9999770
## s8473_Al-s7307           2.431381e-04 -2.770069e-03  3.256345e-03 1.0000000
## s8473_In-s7307          -2.010500e-03 -5.265135e-03  1.244135e-03 0.6663385
## s8473_In_Al-s7307       -3.335240e-04 -3.346731e-03  2.679683e-03 1.0000000
## s7307_In-s7307_Al        1.082257e-03 -1.930950e-03  4.095464e-03 0.9938109
## s7307_In_Al-s7307_Al     3.049047e-04 -2.708302e-03  3.318111e-03 1.0000000
## s8353-s7307_Al           1.095162e-03 -1.918045e-03  4.108369e-03 0.9930410
## s8353_Al-s7307_Al       -8.607590e-04 -3.873966e-03  2.152448e-03 0.9994754
## s8353_In-s7307_Al        2.258370e-03 -7.548368e-04  5.271577e-03 0.3519862
## s8353_In_Al-s7307_Al    -3.454563e-03 -7.144973e-03  2.358464e-04 0.0885720
## s8473-s7307_Al           2.127433e-03 -8.857733e-04  5.140640e-03 0.4497538
## s8473_Al-s7307_Al        1.704338e-03 -1.308869e-03  4.717545e-03 0.7845112
## s8473_In-s7307_Al       -5.493001e-04 -3.803935e-03  2.705335e-03 0.9999994
## s8473_In_Al-s7307_Al     1.127676e-03 -1.885531e-03  4.140883e-03 0.9907516
## s7307_In_Al-s7307_In    -7.773520e-04 -3.790559e-03  2.235855e-03 0.9998428
## s8353-s7307_In           1.290539e-05 -3.000301e-03  3.026112e-03 1.0000000
## s8353_Al-s7307_In       -1.943016e-03 -4.956223e-03  1.070191e-03 0.5998256
## s8353_In-s7307_In        1.176113e-03 -1.837094e-03  4.189320e-03 0.9862557
## s8353_In_Al-s7307_In    -4.536820e-03 -8.227229e-03 -8.464103e-04 0.0048352
## s8473-s7307_In           1.045177e-03 -1.968030e-03  4.058383e-03 0.9956442
## s8473_Al-s7307_In        6.220812e-04 -2.391126e-03  3.635288e-03 0.9999905
## s8473_In-s7307_In       -1.631557e-03 -4.886192e-03  1.623078e-03 0.8970403
## s8473_In_Al-s7307_In     4.541905e-05 -2.967788e-03  3.058626e-03 1.0000000
## s8353-s7307_In_Al        7.902574e-04 -2.222949e-03  3.803464e-03 0.9998083
## s8353_Al-s7307_In_Al    -1.165664e-03 -4.178871e-03  1.847543e-03 0.9873478
## s8353_In-s7307_In_Al     1.953465e-03 -1.059742e-03  4.966672e-03 0.5912153
## s8353_In_Al-s7307_In_Al -3.759468e-03 -7.449877e-03 -6.905830e-05 0.0419670
## s8473-s7307_In_Al        1.822529e-03 -1.190678e-03  4.835736e-03 0.6970992
## s8473_Al-s7307_In_Al     1.399433e-03 -1.613774e-03  4.412640e-03 0.9405055
## s8473_In-s7307_In_Al    -8.542048e-04 -4.108840e-03  2.400431e-03 0.9998066
## s8473_In_Al-s7307_In_Al  8.227711e-04 -2.190436e-03  3.835978e-03 0.9996902
## s8353_Al-s8353          -1.955921e-03 -4.969128e-03  1.057286e-03 0.5891904
## s8353_In-s8353           1.163208e-03 -1.849999e-03  4.176415e-03 0.9875942
## s8353_In_Al-s8353       -4.549725e-03 -8.240135e-03 -8.593157e-04 0.0046537
## s8473-s8353              1.032271e-03 -1.980935e-03  4.045478e-03 0.9961655
## s8473_Al-s8353           6.091758e-04 -2.404031e-03  3.622383e-03 0.9999928
## s8473_In-s8353          -1.644462e-03 -4.899098e-03  1.610173e-03 0.8914306
## s8473_In_Al-s8353        3.251367e-05 -2.980693e-03  3.045720e-03 1.0000000
## s8353_In-s8353_Al        3.119129e-03  1.059222e-04  6.132336e-03 0.0358867
## s8353_In_Al-s8353_Al    -2.593804e-03 -6.284214e-03  1.096605e-03 0.4573168
## s8473-s8353_Al           2.988192e-03 -2.501429e-05  6.001399e-03 0.0539820
## s8473_Al-s8353_Al        2.565097e-03 -4.481098e-04  5.578304e-03 0.1760074
## s8473_In-s8353_Al        3.114590e-04 -2.943176e-03  3.566094e-03 1.0000000
## s8473_In_Al-s8353_Al     1.988435e-03 -1.024772e-03  5.001642e-03 0.5623656
## s8353_In_Al-s8353_In    -5.712933e-03 -9.403343e-03 -2.022524e-03 0.0001215
## s8473-s8353_In          -1.309365e-04 -3.144143e-03  2.882270e-03 1.0000000
## s8473_Al-s8353_In       -5.540321e-04 -3.567239e-03  2.459175e-03 0.9999980
## s8473_In-s8353_In       -2.807670e-03 -6.062305e-03  4.469652e-04 0.1613632
## s8473_In_Al-s8353_In    -1.130694e-03 -4.143901e-03  1.882513e-03 0.9905115
## s8473-s8353_In_Al        5.581997e-03  1.891587e-03  9.272406e-03 0.0001858
## s8473_Al-s8353_In_Al     5.158901e-03  1.468491e-03  8.849311e-03 0.0007181
## s8473_In-s8353_In_Al     2.905263e-03 -9.847702e-04  6.795296e-03 0.3576014
## s8473_In_Al-s8353_In_Al  4.582239e-03  8.918294e-04  8.272648e-03 0.0042247
## s8473_Al-s8473          -4.230955e-04 -3.436302e-03  2.590111e-03 1.0000000
## s8473_In-s8473          -2.676734e-03 -5.931369e-03  5.779018e-04 0.2175990
## s8473_In_Al-s8473       -9.997577e-04 -4.012964e-03  2.013449e-03 0.9972536
## s8473_In-s8473_Al       -2.253638e-03 -5.508273e-03  1.000997e-03 0.4823120
## s8473_In_Al-s8473_Al    -5.766621e-04 -3.589869e-03  2.436545e-03 0.9999965
## s8473_In_Al-s8473_In     1.676976e-03 -1.577659e-03  4.931611e-03 0.8764894

Unifrac Rarifaed

ps.rar <- rarefy_even_depth(ps.f,  rngseed = 7788, verbose = FALSE)
dist <- phyloseq::distance(ps.rar, method = "unifrac", type = "samples")
groups <- ps.rar@sam_data$Description
mod <- vegan::betadisper(dist, groups)

mod.box <- boxplot(mod)

TukeyHSD(mod)
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                                  diff          lwr           upr     p adj
## s1903_Al-s1903           5.233605e-03 -0.033524178  4.399139e-02 1.0000000
## s1903_In-s1903          -7.222439e-03 -0.045980221  3.153534e-02 0.9999976
## s1903_In_Al-s1903       -1.518960e-02 -0.053947386  2.356818e-02 0.9857302
## s7307-s1903             -3.603076e-02 -0.074788538  2.727027e-03 0.0936080
## s7307_Al-s1903          -3.586284e-02 -0.074620626  2.894939e-03 0.0971230
## s7307_In-s1903          -3.594718e-02 -0.074704967  2.810599e-03 0.0953438
## s7307_In_Al-s1903       -2.708901e-02 -0.065846788  1.166878e-02 0.4666776
## s8353-s1903             -2.181330e-02 -0.060571083  1.694448e-02 0.7903163
## s8353_Al-s1903          -3.874739e-02 -0.077505177  1.038818e-05 0.0501244
## s8353_In-s1903          -2.840887e-02 -0.067166654  1.034891e-02 0.3878114
## s8353_In_Al-s1903       -8.935668e-02 -0.136825077 -4.188829e-02 0.0000021
## s8473-s1903             -3.562596e-02 -0.074383739  3.131827e-03 0.1022698
## s8473_Al-s1903          -2.660726e-02 -0.065365041  1.215052e-02 0.4967416
## s8473_In-s1903          -6.242391e-02 -0.104287102 -2.056072e-02 0.0002398
## s8473_In_Al-s1903       -3.334672e-02 -0.072104503  5.411062e-03 0.1642187
## s1903_In-s1903_Al       -1.245604e-02 -0.051213826  2.630174e-02 0.9980449
## s1903_In_Al-s1903_Al    -2.042321e-02 -0.059180990  1.833457e-02 0.8575605
## s7307-s1903_Al          -4.126436e-02 -0.080022143 -2.506578e-03 0.0269346
## s7307_Al-s1903_Al       -4.109645e-02 -0.079854231 -2.338666e-03 0.0281060
## s7307_In-s1903_Al       -4.118079e-02 -0.079938571 -2.423006e-03 0.0275119
## s7307_In_Al-s1903_Al    -3.232261e-02 -0.071080393  6.435173e-03 0.2001961
## s8353-s1903_Al          -2.704691e-02 -0.065804688  1.171088e-02 0.4692829
## s8353_Al-s1903_Al       -4.398100e-02 -0.082738782 -5.223216e-03 0.0132570
## s8353_In-s1903_Al       -3.364248e-02 -0.072400259  5.115307e-03 0.1548148
## s8353_In_Al-s1903_Al    -9.459029e-02 -0.142058682 -4.712189e-02 0.0000005
## s8473-s1903_Al          -4.085956e-02 -0.079617343 -2.101778e-03 0.0298378
## s8473_Al-s1903_Al       -3.184086e-02 -0.070598646  6.916920e-03 0.2190063
## s8473_In-s1903_Al       -6.765752e-02 -0.109520707 -2.579433e-02 0.0000534
## s8473_In_Al-s1903_Al    -3.858033e-02 -0.077338108  1.774572e-04 0.0521628
## s1903_In_Al-s1903_In    -7.967165e-03 -0.046724947  3.079062e-02 0.9999911
## s7307-s1903_In          -2.880832e-02 -0.067566100  9.949465e-03 0.3652332
## s7307_Al-s1903_In       -2.864041e-02 -0.067398188  1.011738e-02 0.3746417
## s7307_In-s1903_In       -2.872475e-02 -0.067482528  1.003304e-02 0.3699007
## s7307_In_Al-s1903_In    -1.986657e-02 -0.058624349  1.889122e-02 0.8806033
## s8353-s1903_In          -1.459086e-02 -0.053348645  2.416692e-02 0.9902131
## s8353_Al-s1903_In       -3.152496e-02 -0.070282738  7.232827e-03 0.2320086
## s8353_In-s1903_In       -2.118643e-02 -0.059944215  1.757135e-02 0.8222669
## s8353_In_Al-s1903_In    -8.213424e-02 -0.129602638 -3.466585e-02 0.0000133
## s8473-s1903_In          -2.840352e-02 -0.067161300  1.035427e-02 0.3881185
## s8473_Al-s1903_In       -1.938482e-02 -0.058142602  1.937296e-02 0.8986323
## s8473_In-s1903_In       -5.520147e-02 -0.097064664 -1.333828e-02 0.0017872
## s8473_In_Al-s1903_In    -2.612428e-02 -0.064882065  1.263350e-02 0.5273350
## s7307-s1903_In_Al       -2.084115e-02 -0.059598935  1.791663e-02 0.8387468
## s7307_Al-s1903_In_Al    -2.067324e-02 -0.059431023  1.808454e-02 0.8464576
## s7307_In-s1903_In_Al    -2.075758e-02 -0.059515363  1.800020e-02 0.8426098
## s7307_In_Al-s1903_In_Al -1.189940e-02 -0.050657185  2.685838e-02 0.9988139
## s8353-s1903_In_Al       -6.623697e-03 -0.045381480  3.213409e-02 0.9999992
## s8353_Al-s1903_In_Al    -2.355779e-02 -0.062315574  1.519999e-02 0.6900694
## s8353_In-s1903_In_Al    -1.321927e-02 -0.051977051  2.553851e-02 0.9963363
## s8353_In_Al-s1903_In_Al -7.416708e-02 -0.121635474 -2.669868e-02 0.0001022
## s8473-s1903_In_Al       -2.043635e-02 -0.059194135  1.832143e-02 0.8569882
## s8473_Al-s1903_In_Al    -1.141766e-02 -0.050175438  2.734013e-02 0.9992539
## s8473_In-s1903_In_Al    -4.723431e-02 -0.089097499 -5.371119e-03 0.0141737
## s8473_In_Al-s1903_In_Al -1.815712e-02 -0.056914900  2.060066e-02 0.9364910
## s7307_Al-s7307           1.679122e-04 -0.038589870  3.892569e-02 1.0000000
## s7307_In-s7307           8.357188e-05 -0.038674211  3.884135e-02 1.0000000
## s7307_In_Al-s7307        8.941751e-03 -0.029816032  4.769953e-02 0.9999606
## s8353-s7307              1.421746e-02 -0.024540327  5.297524e-02 0.9923810
## s8353_Al-s7307          -2.716638e-03 -0.041474421  3.604114e-02 1.0000000
## s8353_In-s7307           7.621884e-03 -0.031135898  4.637967e-02 0.9999950
## s8353_In_Al-s7307       -5.332593e-02 -0.100794321 -5.857530e-03 0.0149084
## s8473-s7307              4.048000e-04 -0.038352983  3.916258e-02 1.0000000
## s8473_Al-s7307           9.423497e-03 -0.029334285  4.818128e-02 0.9999239
## s8473_In-s7307          -2.639316e-02 -0.068256346  1.547003e-02 0.6353255
## s8473_In_Al-s7307        2.684035e-03 -0.036073748  4.144182e-02 1.0000000
## s7307_In-s7307_Al       -8.434035e-05 -0.038842123  3.867344e-02 1.0000000
## s7307_In_Al-s7307_Al     8.773838e-03 -0.029983944  4.753162e-02 0.9999690
## s8353-s7307_Al           1.404954e-02 -0.024708239  5.280733e-02 0.9932196
## s8353_Al-s7307_Al       -2.884551e-03 -0.041642333  3.587323e-02 1.0000000
## s8353_In-s7307_Al        7.453972e-03 -0.031303810  4.621175e-02 0.9999963
## s8353_In_Al-s7307_Al    -5.349384e-02 -0.100962233 -6.025442e-03 0.0143749
## s8473-s7307_Al           2.368877e-04 -0.038520895  3.899467e-02 1.0000000
## s8473_Al-s7307_Al        9.255585e-03 -0.029502197  4.801337e-02 0.9999392
## s8473_In-s7307_Al       -2.656107e-02 -0.068424259  1.530212e-02 0.6254568
## s8473_In_Al-s7307_Al     2.516123e-03 -0.036241660  4.127391e-02 1.0000000
## s7307_In_Al-s7307_In     8.858179e-03 -0.029899604  4.761596e-02 0.9999650
## s8353-s7307_In           1.413388e-02 -0.024623899  5.289167e-02 0.9928084
## s8353_Al-s7307_In       -2.800210e-03 -0.041557993  3.595757e-02 1.0000000
## s8353_In-s7307_In        7.538313e-03 -0.031219470  4.629610e-02 0.9999957
## s8353_In_Al-s7307_In    -5.340950e-02 -0.100877893 -5.941102e-03 0.0146406
## s8473-s7307_In           3.212281e-04 -0.038436555  3.907901e-02 1.0000000
## s8473_Al-s7307_In        9.339926e-03 -0.029417857  4.809771e-02 0.9999319
## s8473_In-s7307_In       -2.647673e-02 -0.068339918  1.538646e-02 0.6304184
## s8473_In_Al-s7307_In     2.600463e-03 -0.036157319  4.135825e-02 1.0000000
## s8353-s7307_In_Al        5.275705e-03 -0.033482078  4.403349e-02 1.0000000
## s8353_Al-s7307_In_Al    -1.165839e-02 -0.050416172  2.709939e-02 0.9990559
## s8353_In-s7307_In_Al    -1.319866e-03 -0.040077649  3.743792e-02 1.0000000
## s8353_In_Al-s7307_In_Al -6.226768e-02 -0.109736072 -1.479928e-02 0.0019313
## s8473-s7307_In_Al       -8.536951e-03 -0.047294733  3.022083e-02 0.9999781
## s8473_Al-s7307_In_Al     4.817469e-04 -0.038276036  3.923953e-02 1.0000000
## s8473_In-s7307_In_Al    -3.533491e-02 -0.077198097  6.528283e-03 0.1858185
## s8473_In_Al-s7307_In_Al -6.257715e-03 -0.045015498  3.250007e-02 0.9999997
## s8353_Al-s8353          -1.693409e-02 -0.055691876  2.182369e-02 0.9632412
## s8353_In-s8353          -6.595571e-03 -0.045353353  3.216221e-02 0.9999993
## s8353_In_Al-s8353       -6.754338e-02 -0.115011776 -2.007499e-02 0.0005364
## s8473-s8353             -1.381266e-02 -0.052570438  2.494513e-02 0.9942733
## s8473_Al-s8353          -4.793958e-03 -0.043551740  3.396382e-02 1.0000000
## s8473_In-s8353          -4.061061e-02 -0.082473802  1.252578e-03 0.0656938
## s8473_In_Al-s8353       -1.153342e-02 -0.050291203  2.722436e-02 0.9991637
## s8353_In-s8353_Al        1.033852e-02 -0.028419260  4.909631e-02 0.9997652
## s8353_In_Al-s8353_Al    -5.060929e-02 -0.098077683 -3.140892e-03 0.0265408
## s8473-s8353_Al           3.121438e-03 -0.035636344  4.187922e-02 1.0000000
## s8473_Al-s8353_Al        1.214014e-02 -0.026617647  5.089792e-02 0.9985210
## s8473_In-s8353_Al       -2.367652e-02 -0.065539708  1.818667e-02 0.7846228
## s8473_In_Al-s8353_Al     5.400674e-03 -0.033357109  4.415846e-02 1.0000000
## s8353_In_Al-s8353_In    -6.094781e-02 -0.108416206 -1.347941e-02 0.0026414
## s8473-s8353_In          -7.217085e-03 -0.045974867  3.154070e-02 0.9999976
## s8473_Al-s8353_In        1.801613e-03 -0.036956170  4.055940e-02 1.0000000
## s8473_In-s8353_In       -3.401504e-02 -0.075878231  7.848149e-03 0.2334036
## s8473_In_Al-s8353_In    -4.937849e-03 -0.043695632  3.381993e-02 1.0000000
## s8473-s8353_In_Al        5.373073e-02  0.006262330  1.011991e-01 0.0136526
## s8473_Al-s8353_In_Al     6.274942e-02  0.015281028  1.102178e-01 0.0017213
## s8473_In-s8353_In_Al     2.693277e-02 -0.023103313  7.696885e-02 0.8377738
## s8473_In_Al-s8353_In_Al  5.600996e-02  0.008541565  1.034784e-01 0.0082442
## s8473_Al-s8473           9.018697e-03 -0.029739085  4.777648e-02 0.9999561
## s8473_In-s8473          -2.679796e-02 -0.068661146  1.506523e-02 0.6114779
## s8473_In_Al-s8473        2.279235e-03 -0.036478547  4.103702e-02 1.0000000
## s8473_In-s8473_Al       -3.581665e-02 -0.077679844  6.046536e-03 0.1703870
## s8473_In_Al-s8473_Al    -6.739462e-03 -0.045497245  3.201832e-02 0.9999990
## s8473_In_Al-s8473_In     2.907719e-02 -0.012785998  7.094038e-02 0.4771477

Al Bray VST by full model normalisation

dist <- phyloseq::distance(ps.vst.compl, method = "bray", type = "samples")
groups <- ps.vst.compl@sam_data$Al
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)

TukeyHSD(mod)
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##             diff          lwr          upr     p adj
## +-- -0.001236667 -0.002258316 -0.000215019 0.0185207

Al Unifrac Rarifaed

ps.rar <- rarefy_even_depth(ps.f,  rngseed = 7788, verbose = FALSE)
dist <- phyloseq::distance(ps.rar, method = "unifrac", type = "samples")
groups <- ps.rar@sam_data$Al
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)

TukeyHSD(mod)
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##             diff         lwr       upr     p adj
## +-- -0.001678026 -0.01496145 0.0116054 0.8013204

In Bray VST by full model normalisation

dist <- phyloseq::distance(ps.vst.compl, method = "bray", type = "samples")
groups <- ps.vst.compl@sam_data$Inoculation
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)

TukeyHSD(mod)
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##              diff          lwr          upr     p adj
## +-- -0.0002494295 -0.001222192 0.0007233325 0.6098094

In Unifrac Rarifaed

ps.rar <- rarefy_even_depth(ps.f,  rngseed = 7788, verbose = FALSE)
dist <- phyloseq::distance(ps.rar, method = "unifrac", type = "samples")
groups <- ps.rar@sam_data$Inoculation
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)

TukeyHSD(mod)
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##            diff         lwr        upr     p adj
## +-- -0.00902475 -0.02109477 0.00304527 0.1399467
colnames(vst_trans_count_tab) <- meta$Medium_or_Soil
d.vst <- as.data.frame(vst_trans_count_tab)
t.d.vst <- t(d.vst)
vst.median <- aggregate(t.d.vst, by=list(meta$Medium_or_Soil), median) 
vst.median <- as.data.frame(vst.median)
vst.median$Group.1 <- as.character(vst.median$Group.1) 
vst.median <-  column_to_rownames(vst.median, "Group.1")
vst.median <- t(vst.median)
vst.median <- as.data.frame(vst.median)
vst.median
p.differ <- ggplot(data=vst.median) + geom_point(aes(x = soil, y = medium)) + theme_bw()
p.differ

gbs.core.merged <- vst.median[rownames(gbs.core),]
gbs.core.merged
metadata <- as.data.frame(ps.f@sam_data)
levels(metadata$Al) <- c("pos", "neg")
levels(metadata$Inoculation) <- c("pos", "neg")
metadata

plot(BineM ~ Description, data=metadata)

require(igraph)
require(igraph)
require(tibble)
require(RColorBrewer)

some_ps <- ps.f
cor.otus <- cor(ps.f@otu_table@.Data, method = "spearman")

tax <- as.data.frame(ps.f@tax_table@.Data)
lev <- levels(tax$Family)
len_lev <- length(lev)
pal <- brewer.pal(len_lev,"Accent")
vertex.col <- pal[tax$Family]

cor.otu <- cor(ps.f@otu_table@.Data, method = "spearman")

cor.otu[cor.otu < .75 ] <- 0
diag(cor.otu) <- 0
new_g <- graph.adjacency(cor.otu, mode='undirected', weighted = 'correlation')
cohesion(new_g)
new_g
cohesion.igraph()
library(heatmaply)
## Loading required package: plotly
## 
## Attaching package: 'plotly'
## The following object is masked from 'package:IRanges':
## 
##     slice
## The following object is masked from 'package:S4Vectors':
## 
##     rename
## The following object is masked from 'package:ggplot2':
## 
##     last_plot
## The following object is masked from 'package:stats':
## 
##     filter
## The following object is masked from 'package:graphics':
## 
##     layout
## Loading required package: viridis
## Loading required package: viridisLite
## Registered S3 method overwritten by 'dendextend':
##   method     from 
##   rev.hclust vegan
## Registered S3 method overwritten by 'gclus':
##   method         from 
##   reorder.hclust vegan
## Registered S3 method overwritten by 'seriation':
##   method         from 
##   reorder.hclust gclus
## 
## ======================
## Welcome to heatmaply version 1.1.0
## 
## Type citation('heatmaply') for how to cite the package.
## Type ?heatmaply for the main documentation.
## 
## The github page is: https://github.com/talgalili/heatmaply/
## Please submit your suggestions and bug-reports at: https://github.com/talgalili/heatmaply/issues
## Or contact: <tal.galili@gmail.com>
## ======================
## 
## Attaching package: 'heatmaply'
## The following object is masked from 'package:BiocGenerics':
## 
##     normalize
meta <- function(x) {
    df <- as(sample_data(x), "data.frame")
    rownames(df) <- sample_names(x)
    df
}
metadata <- meta(ps.f)
metadata.num <- metadata %>%
  dplyr::select_if(is.numeric) %>% 
  select(-c("QRTPCR", "SeedCa"))

heatmaply(scale(metadata.num))
clust <- hclust(dist(t(metadata.num)))
plot(clust)

# knitr::purl("Al.Rmd")
heatmaply_cor(
  cor(scale(metadata.num)),
  k_col = 2,
  k_row = 2
  )
r <- cor(scale(metadata.num))
## We use this function to calculate a matrix of p-values from correlation tests
## https://stackoverflow.com/a/13112337/4747043
cor.test.p <- function(x){
    FUN <- function(x, y) cor.test(x, y)[["p.value"]]
    z <- outer(
      colnames(x), 
      colnames(x), 
      Vectorize(function(i,j) FUN(x[,i], x[,j]))
    )
    dimnames(z) <- list(colnames(x), colnames(x))
    z
}
p <- cor.test.p(scale(metadata.num))
p <- as.data.frame(p)
p
##                              BineM        SeedM    BineSeedM        SeedN
## BineM                 0.000000e+00 7.489718e-14 6.694229e-27 7.413713e-13
## SeedM                 7.489718e-14 0.000000e+00 4.026701e-34 1.054934e-06
## BineSeedM             6.694229e-27 4.026701e-34 0.000000e+00 4.659827e-10
## SeedN                 7.413713e-13 1.054934e-06 4.659827e-10 0.000000e+00
## SeedMOne              1.148927e-02 3.835627e-12 3.667342e-07 7.454551e-01
## NodPerPlant           8.113421e-01 1.364780e-01 4.340295e-01 3.043066e-01
## NodPerPlant.1         2.294759e-03 4.532977e-02 9.541708e-03 2.961543e-01
## Mic                   1.455431e-02 3.306299e-01 9.145987e-02 1.721279e-03
## Ves                   1.151929e-01 3.310524e-02 4.525624e-02 3.899656e-01
## Arb                   2.605397e-04 1.934130e-02 2.162542e-03 4.346141e-05
## pH                    4.973855e-01 1.248652e-01 2.181272e-01 6.533320e-02
## NitBine               9.248097e-13 2.593620e-05 1.045008e-08 2.734681e-10
## Nit15                 2.627838e-07 2.860928e-09 1.678371e-09 1.319500e-03
## NitPerPlant           4.159787e-09 1.734642e-05 1.177882e-07 1.540250e-04
## Nit15PerPlant         8.647113e-01 2.251138e-01 4.201862e-01 7.939532e-01
## NitSeed               1.076526e-01 4.371717e-01 7.973062e-01 8.895170e-03
## NitSeed15             1.053072e-07 2.517244e-14 1.287651e-12 2.657828e-04
## NitSeedPerPlant       1.301900e-09 2.644472e-38 1.918494e-22 1.271378e-04
## Nit15SeedPerPlant     2.171347e-03 3.582088e-07 8.667505e-06 2.701152e-02
## NitBineSeedPerPlant   9.592183e-11 4.024084e-37 4.950142e-24 5.289828e-05
## Nit15BineSeedPerPlant 1.289857e-02 3.334681e-04 9.754174e-04 4.990483e-02
## BineAl                3.271017e-12 3.913589e-06 2.561218e-09 8.766065e-11
## BineB                 1.186995e-10 1.082446e-03 1.605944e-06 9.770748e-09
## BineCa                6.585652e-04 9.030738e-01 1.175478e-01 4.492061e-04
## BineCo                3.623929e-10 3.114072e-05 8.087920e-08 4.197235e-09
## BineCu                4.091990e-14 5.314457e-08 1.079105e-11 6.236152e-08
## BineFe                9.221922e-08 6.024761e-09 1.458851e-09 6.267748e-04
## BineK                 2.326359e-08 3.147091e-10 9.746133e-11 7.027482e-05
## BineMg                4.518537e-14 1.973531e-09 5.629125e-13 1.772338e-12
## BineMn                1.175390e-02 2.759137e-02 1.314599e-02 9.827159e-05
## BineMo                2.020687e-02 5.431431e-01 1.584792e-01 4.315838e-01
## BineNi                2.401936e-10 7.252496e-04 1.314402e-06 4.587339e-09
## BineP                 6.014190e-17 6.516313e-11 1.674190e-15 2.763240e-10
## BineS                 3.344074e-11 5.503420e-04 5.801529e-07 3.049420e-06
## BineZn                2.469025e-07 6.414849e-09 2.679559e-09 2.672649e-06
## SeedAl                7.557251e-04 3.538670e-07 4.095890e-06 6.296745e-04
## SeedB                 1.823334e-01 5.237074e-01 3.223223e-01 5.994818e-01
## SeedCo                3.845294e-01 4.766561e-01 9.731401e-01 1.076529e-01
## SeedCu                3.604773e-08 4.015702e-04 3.651736e-06 2.475381e-05
## SeedFe                1.360472e-01 9.153281e-01 4.608725e-01 2.016334e-01
## SeedK                 9.574089e-01 3.682458e-01 6.054327e-01 2.441536e-01
## SeedMg                2.005184e-01 3.185522e-01 9.838024e-01 2.777923e-03
## SeedMn                1.599300e-01 7.724757e-01 6.454524e-01 1.704528e-02
## SeedMo                7.074834e-02 5.913396e-01 2.542721e-01 1.500116e-01
## SeedNi                1.285328e-01 4.040683e-01 2.328431e-01 6.410339e-03
## SeedP                 3.408959e-09 2.004082e-03 7.499343e-06 1.362153e-07
## SeedS                 8.787509e-01 8.492019e-03 1.376650e-01 7.156944e-02
## SeedZn                3.008533e-01 7.459879e-01 5.061749e-01 7.151021e-02
## SoilAl                1.435347e-01 1.197649e-01 1.085712e-01 1.353056e-02
## SoilB                 6.705433e-01 3.093172e-01 6.767656e-01 3.945656e-01
## SoilCa                2.963318e-02 8.377317e-01 3.959852e-01 6.723663e-03
## SoilCo                2.300933e-01 3.477471e-01 9.831273e-01 3.812530e-01
## SoilCu                1.410986e-03 1.688090e-01 2.369009e-02 4.311786e-03
## SoilFe                6.811221e-01 3.627767e-02 1.504967e-01 2.005809e-01
## SoilK                 2.855802e-05 4.027763e-10 1.260529e-08 2.860483e-02
## SoilMg                1.961378e-05 2.799423e-10 7.956769e-09 2.387634e-02
## SoilMn                1.660407e-01 7.538478e-01 6.625963e-01 8.118906e-01
## SoilMo                2.247808e-02 2.521754e-01 8.486080e-02 1.279713e-03
## SoilNi                2.567026e-01 5.083392e-01 9.082374e-01 5.553840e-01
## SoilP                 6.696890e-01 2.638312e-01 6.338503e-01 1.786865e-01
## SoilS                 1.321809e-01 6.314801e-01 3.316208e-01 1.222232e-01
## SoilZn                2.564993e-04 6.560220e-02 5.914686e-03 1.431195e-02
## BinePerPlantAl        1.494682e-19 3.474709e-08 1.568495e-13 1.412155e-07
## BinePerPlantB         3.709157e-03 7.028634e-03 3.117206e-03 8.380075e-02
## BinePerPLantCa        3.011352e-11 1.032774e-13 7.822823e-15 3.871792e-05
## BinePerPlantCo        8.980286e-19 1.290804e-08 8.720929e-14 1.406053e-06
## BinePerPlantCu        1.173801e-13 8.098674e-07 1.982998e-10 2.795032e-08
## BinePerPlantFe        2.653164e-08 2.573478e-02 1.685925e-04 4.046656e-07
## BinePerPlantK         1.044413e-35 2.001993e-09 7.995037e-18 1.269280e-12
## BinePerPlantMg        1.459958e-05 6.042526e-02 2.243337e-03 3.563403e-02
## BinePerPlantMn        8.080681e-04 1.043098e-01 1.293571e-02 4.832108e-01
## BinePerPlantMo        3.718677e-01 1.497829e-01 2.027241e-01 1.237158e-02
## BinePerPlantNi        3.768417e-26 4.678623e-12 8.929399e-20 8.261275e-09
## BinePerPlantP         2.037334e-05 4.161894e-02 1.750313e-03 2.167122e-03
## BinePerPlantSe        3.222530e-12 7.732814e-09 1.088847e-11 4.630485e-09
## BinePerPLantZn        4.430851e-03 8.516158e-01 1.692758e-01 1.958656e-01
## SeedPerPlantAl        1.232852e-12 6.229793e-23 1.471661e-21 8.455587e-06
## SeedPerPlantB         1.103012e-11 2.749380e-17 1.904395e-17 7.702688e-05
## SeedPerPlantCa        3.328553e-04 2.532590e-14 1.657473e-09 2.098842e-01
## SeedPerPlantCo        4.799386e-05 1.246118e-13 4.852072e-10 1.044915e-01
## SeedPerPlantCu        2.898171e-04 5.336645e-15 8.302264e-10 1.105541e-02
## SeedPerPlantFe        1.805725e-05 3.277178e-14 1.153970e-10 5.642754e-03
## SeedPerPlantK         2.359996e-09 1.496497e-23 2.905169e-18 7.859006e-04
## SeedPerPlantMg        2.896234e-07 1.794763e-23 7.752769e-16 1.156269e-02
## SeedPerPlantMn        1.709076e-05 3.292993e-14 1.100205e-10 4.981403e-02
## SeedPerPlantMo        3.353602e-04 1.634035e-12 8.081779e-09 1.285379e-02
## SeedPerPlantNi        2.409630e-04 1.427690e-08 3.581291e-07 1.320100e-01
## SeedPerPlantP         4.932094e-03 8.317956e-13 8.874195e-08 1.110410e-01
## SeedPerPlantS         9.425437e-08 5.689377e-26 3.766471e-17 3.710404e-03
## SeedPerPlantZn        2.819177e-07 6.031918e-15 1.439148e-12 3.205207e-03
## BineSeedPerPlantAl    1.232852e-12 6.229793e-23 1.471661e-21 8.455587e-06
## BineSeedPerPlantB     1.501309e-20 7.205288e-09 1.520164e-14 1.016101e-07
## BineSeedPerPlantCa    7.731877e-04 1.494702e-04 1.233070e-04 6.959087e-02
## BineSeedPerPlantCo    2.274433e-11 1.008029e-14 1.378680e-15 4.956171e-05
## BineSeedPerPlantCu    4.135028e-05 1.683978e-16 3.388557e-11 4.783122e-03
## BineSeedPerPlantFe    4.223878e-06 5.535656e-15 1.472421e-11 2.659472e-03
## BineSeedPerPlantK     5.313297e-11 5.634775e-04 6.737753e-07 4.175128e-08
## BineSeedPerPlantMg    1.963493e-39 1.898343e-14 5.387968e-26 2.146142e-11
## BineSeedPerPlantMo    2.016270e-06 1.280180e-13 3.158046e-11 3.099981e-02
## BineSeedPerPlantNi    8.189738e-06 1.893968e-03 9.362056e-05 1.985167e-01
## BineSeedPerPlantP     3.525044e-02 1.163480e-03 3.562854e-03 3.107058e-03
## BineSeedPerPlantS     6.929372e-04 1.225407e-14 2.715045e-09 4.660481e-02
## BineSeedPerPlantS.1   1.259389e-08 1.634457e-05 1.719497e-07 2.226735e-04
## BineSeedPerPlantZn    2.061031e-07 4.024267e-15 9.105504e-13 2.720896e-03
##                           SeedMOne  NodPerPlant NodPerPlant.1          Mic
## BineM                 1.148927e-02 8.113421e-01  2.294759e-03 1.455431e-02
## SeedM                 3.835627e-12 1.364780e-01  4.532977e-02 3.306299e-01
## BineSeedM             3.667342e-07 4.340295e-01  9.541708e-03 9.145987e-02
## SeedN                 7.454551e-01 3.043066e-01  2.961543e-01 1.721279e-03
## SeedMOne              0.000000e+00 2.712135e-02  7.598849e-01 3.768374e-01
## NodPerPlant           2.712135e-02 0.000000e+00  2.124068e-11 4.531943e-02
## NodPerPlant.1         7.598849e-01 2.124068e-11  0.000000e+00 5.176037e-01
## Mic                   3.768374e-01 4.531943e-02  5.176037e-01 0.000000e+00
## Ves                   4.846154e-02 2.389451e-01  4.995997e-01 2.519576e-08
## Arb                   9.831349e-01 4.534750e-02  7.127810e-01 7.022996e-25
## pH                    6.145366e-01 7.264893e-01  5.885437e-01 6.872668e-02
## NitBine               7.872472e-01 3.401588e-01  7.646344e-03 1.997719e-02
## Nit15                 1.908160e-04 8.831885e-01  1.641483e-02 1.626954e-01
## NitPerPlant           4.603014e-03 6.221065e-01  1.933406e-01 6.897925e-02
## Nit15PerPlant         5.210818e-01 2.707238e-01  1.088125e-01 8.937536e-01
## NitSeed               6.460111e-04 2.877384e-02  1.755745e-01 7.884334e-01
## NitSeed15             1.931833e-10 1.924655e-05  4.206655e-01 7.075429e-02
## NitSeedPerPlant       6.721596e-15 6.974592e-02  8.287707e-02 3.784840e-01
## Nit15SeedPerPlant     2.591632e-06 9.821613e-01  3.283769e-01 6.364891e-01
## NitBineSeedPerPlant   2.643235e-14 7.947475e-02  7.630264e-02 3.039841e-01
## Nit15BineSeedPerPlant 3.709047e-04 6.597067e-01  8.318318e-01 7.282175e-01
## BineAl                8.712489e-01 7.123651e-02  1.052709e-04 6.811554e-02
## BineB                 1.593502e-01 5.376316e-02  3.117137e-04 6.166576e-02
## BineCa                1.727637e-05 6.112391e-04  1.413728e-03 8.538303e-02
## BineCo                9.157359e-01 3.310455e-01  3.051027e-01 3.948282e-02
## BineCu                4.685122e-02 5.827366e-02  6.467852e-01 3.586186e-04
## BineFe                4.551625e-05 3.194799e-03  8.762090e-01 2.551713e-01
## BineK                 2.343389e-04 7.112724e-03  8.632387e-01 1.185888e-02
## BineMg                1.752964e-01 3.528923e-01  9.334352e-02 8.589502e-02
## BineMn                3.870323e-01 5.674539e-01  7.258543e-02 7.287135e-01
## BineMo                3.421049e-01 9.326035e-02  4.352135e-02 4.069648e-03
## BineNi                2.839071e-01 4.214210e-01  2.162981e-02 2.942192e-02
## BineP                 8.540967e-03 5.109870e-03  9.505376e-01 8.144034e-04
## BineS                 7.443073e-01 5.959311e-01  1.881270e-02 3.710757e-04
## BineZn                4.986753e-03 4.109512e-03  9.045765e-01 5.019419e-01
## SeedAl                3.422364e-06 1.227905e-03  3.441796e-01 6.731865e-02
## SeedB                 9.247857e-01 2.252335e-02  3.699654e-02 4.979110e-01
## SeedCo                2.168663e-02 3.311650e-03  4.238586e-02 3.970468e-03
## SeedCu                3.350110e-01 5.047546e-01  2.571847e-01 6.509002e-04
## SeedFe                1.153571e-01 3.225606e-01  5.074352e-02 3.631630e-01
## SeedK                 2.174261e-01 2.046552e-03  1.094011e-02 1.166672e-02
## SeedMg                6.564451e-04 1.660233e-01  1.827329e-01 5.222887e-04
## SeedMn                2.355726e-03 9.712960e-01  3.420003e-01 2.314176e-02
## SeedMo                7.220257e-01 3.464678e-03  2.086528e-02 5.186742e-03
## SeedNi                9.722718e-01 2.184643e-02  9.486479e-02 1.507674e-02
## SeedP                 8.551305e-01 5.880300e-01  3.295960e-01 7.208981e-05
## SeedS                 3.785236e-06 4.586943e-01  1.419387e-01 1.742156e-03
## SeedZn                1.176629e-01 7.181031e-01  4.293749e-01 6.490672e-03
## SoilAl                8.626964e-01 5.689698e-01  8.231362e-02 4.792080e-01
## SoilB                 5.670697e-02 5.987851e-01  3.992093e-01 2.817833e-01
## SoilCa                1.222979e-03 9.294957e-02  6.077379e-02 6.340649e-01
## SoilCo                2.450010e-03 3.036141e-05  1.481222e-03 2.870553e-01
## SoilCu                1.011099e-01 1.879477e-04  2.960524e-04 6.811619e-01
## SoilFe                2.937610e-02 5.718002e-01  9.612897e-01 8.562705e-01
## SoilK                 2.958565e-11 7.640260e-03  9.687143e-01 3.894700e-01
## SoilMg                3.962234e-11 8.884729e-03  9.727853e-01 3.878507e-01
## SoilMn                5.458818e-01 4.454533e-04  1.446053e-02 9.087793e-01
## SoilMo                9.335008e-02 4.100448e-02  3.531213e-03 8.793174e-01
## SoilNi                1.562049e-02 1.152114e-04  9.126317e-04 3.533641e-01
## SoilP                 6.154510e-04 5.217284e-08  9.533578e-05 7.933915e-01
## SoilS                 1.966330e-01 9.675884e-03  1.374216e-02 8.283900e-01
## SoilZn                7.769142e-01 2.062840e-01  7.478985e-01 4.801573e-03
## BinePerPlantAl        9.356318e-03 5.345398e-01  1.970743e-01 2.572149e-02
## BinePerPlantB         3.993424e-04 1.011553e-01  3.978180e-01 4.725200e-01
## BinePerPLantCa        2.937633e-09 4.259498e-02  3.796191e-01 2.695650e-01
## BinePerPlantCo        4.308921e-03 2.320188e-01  9.812168e-04 5.978797e-02
## BinePerPlantCu        1.068128e-01 1.807564e-01  2.815038e-04 4.100511e-01
## BinePerPlantFe        3.153609e-01 2.729247e-02  3.820938e-03 2.079956e-02
## BinePerPlantK         9.215216e-02 3.968159e-01  9.813650e-04 3.023157e-02
## BinePerPlantMg        2.680638e-01 1.057936e-01  7.142975e-02 9.214682e-02
## BinePerPlantMn        7.179964e-02 3.799846e-01  3.761023e-01 1.340045e-01
## BinePerPlantMo        3.915633e-01 4.044616e-02  2.342172e-01 1.171120e-01
## BinePerPlantNi        6.608659e-04 9.656525e-01  8.642781e-03 4.104410e-02
## BinePerPlantP         8.921779e-01 1.393547e-04  9.983344e-06 8.079181e-01
## BinePerPlantSe        3.459950e-03 6.624212e-01  9.758253e-02 6.500404e-01
## BinePerPLantZn        5.512639e-01 2.046934e-03  2.342378e-02 8.498579e-02
## SeedPerPlantAl        6.421513e-08 7.804224e-01  1.302129e-02 4.875941e-01
## SeedPerPlantB         3.951793e-07 9.537685e-01  1.588413e-02 6.938650e-01
## SeedPerPlantCa        1.706851e-18 3.856005e-01  2.162035e-01 1.554716e-01
## SeedPerPlantCo        4.601521e-13 6.814264e-01  2.031137e-02 1.296833e-01
## SeedPerPlantCu        1.668730e-12 6.114631e-02  5.050353e-01 3.913024e-01
## SeedPerPlantFe        6.222273e-11 6.789916e-02  7.876998e-01 9.361672e-01
## SeedPerPlantK         8.334045e-11 7.902136e-01  1.240784e-02 8.779230e-01
## SeedPerPlantMg        8.022929e-16 4.643407e-01  3.228929e-02 5.519822e-01
## SeedPerPlantMn        7.691120e-15 2.779515e-01  4.334461e-01 4.292482e-01
## SeedPerPlantMo        7.099570e-07 9.039738e-01  6.468975e-03 5.596332e-01
## SeedPerPlantNi        6.384718e-06 6.381128e-01  1.919721e-02 4.101017e-01
## SeedPerPlantP         7.239726e-15 6.985408e-02  5.180390e-01 1.824792e-01
## SeedPerPlantS         3.119784e-14 3.653904e-01  2.916377e-02 7.592230e-01
## SeedPerPlantZn        4.386271e-11 3.697690e-01  2.810580e-01 4.422566e-01
## BineSeedPerPlantAl    6.421513e-08 7.804224e-01  1.302129e-02 4.875941e-01
## BineSeedPerPlantB     5.591237e-03 5.458432e-01  1.696241e-01 2.946887e-02
## BineSeedPerPlantCa    1.889548e-06 9.805331e-02  6.058855e-01 7.144626e-01
## BineSeedPerPlantCo    5.429866e-10 5.462334e-02  3.239750e-01 3.329116e-01
## BineSeedPerPlantCu    1.232032e-12 8.650503e-02  3.743024e-01 4.931121e-01
## BineSeedPerPlantFe    1.058517e-10 8.909326e-02  6.462614e-01 9.750851e-01
## BineSeedPerPlantK     9.711969e-01 4.370392e-02  1.434596e-03 3.276573e-02
## BineSeedPerPlantMg    2.700945e-03 5.737543e-01  7.621753e-04 8.512363e-02
## BineSeedPerPlantMo    1.944500e-13 4.305307e-01  3.190624e-01 6.147989e-01
## BineSeedPerPlantNi    2.942364e-03 3.728820e-01  1.256979e-01 1.516146e-01
## BineSeedPerPlantP     2.024178e-02 7.473379e-02  7.430265e-01 7.288169e-02
## BineSeedPerPlantS     3.569954e-15 8.286406e-02  3.972038e-01 2.718172e-01
## BineSeedPerPlantS.1   3.917570e-02 2.731187e-03  2.874298e-06 7.554777e-01
## BineSeedPerPlantZn    4.436007e-11 3.699794e-01  2.750395e-01 4.486380e-01
##                                Ves          Arb           pH      NitBine
## BineM                 1.151929e-01 2.605397e-04 4.973855e-01 9.248097e-13
## SeedM                 3.310524e-02 1.934130e-02 1.248652e-01 2.593620e-05
## BineSeedM             4.525624e-02 2.162542e-03 2.181272e-01 1.045008e-08
## SeedN                 3.899656e-01 4.346141e-05 6.533320e-02 2.734681e-10
## SeedMOne              4.846154e-02 9.831349e-01 6.145366e-01 7.872472e-01
## NodPerPlant           2.389451e-01 4.534750e-02 7.264893e-01 3.401588e-01
## NodPerPlant.1         4.995997e-01 7.127810e-01 5.885437e-01 7.646344e-03
## Mic                   2.519576e-08 7.022996e-25 6.872668e-02 1.997719e-02
## Ves                   0.000000e+00 4.322531e-04 4.013225e-01 4.389072e-01
## Arb                   4.322531e-04 0.000000e+00 2.811767e-01 9.854406e-04
## pH                    4.013225e-01 2.811767e-01 0.000000e+00 8.010962e-01
## NitBine               4.389072e-01 9.854406e-04 8.010962e-01 0.000000e+00
## Nit15                 3.279805e-01 3.241944e-02 2.361596e-01 8.399209e-05
## NitPerPlant           2.730526e-01 2.569171e-02 7.786770e-01 5.692845e-01
## Nit15PerPlant         9.816128e-01 9.424641e-01 6.992481e-02 2.369514e-03
## NitSeed               8.139509e-01 3.801017e-01 6.839225e-02 4.941641e-04
## NitSeed15             1.369895e-01 5.251667e-03 6.652944e-01 1.211781e-02
## NitSeedPerPlant       5.613765e-02 4.650215e-02 2.150381e-01 3.493539e-03
## Nit15SeedPerPlant     3.846067e-02 9.290116e-01 5.635805e-01 4.259977e-01
## NitBineSeedPerPlant   5.563445e-02 3.409613e-02 2.329133e-01 5.200722e-03
## Nit15BineSeedPerPlant 8.055337e-02 9.621317e-01 2.377071e-01 6.501865e-01
## BineAl                8.361744e-01 1.107317e-02 1.485945e-03 8.052290e-13
## BineB                 8.292461e-01 8.205825e-03 1.081880e-01 2.886647e-15
## BineCa                5.521243e-01 5.380795e-02 8.619755e-01 2.936696e-12
## BineCo                7.703393e-01 6.825323e-03 1.642402e-02 2.656756e-12
## BineCu                7.330960e-01 9.774436e-06 1.996351e-01 1.148085e-11
## BineFe                4.740626e-01 4.794507e-02 4.521026e-02 1.986111e-02
## BineK                 9.053179e-01 7.454037e-04 4.370218e-02 1.876502e-06
## BineMg                3.806603e-01 5.765545e-03 7.632021e-05 3.457526e-12
## BineMn                5.942813e-01 8.311810e-01 2.989945e-15 7.530033e-03
## BineMo                1.962753e-01 5.310146e-03 8.574012e-10 4.694737e-05
## BineNi                9.667760e-01 4.847155e-03 6.868705e-02 4.619443e-17
## BineP                 5.834493e-01 9.452515e-06 8.046401e-01 5.392685e-11
## BineS                 8.539190e-01 7.519993e-05 3.184586e-02 2.525804e-18
## BineZn                1.852883e-01 1.128449e-01 2.572334e-05 6.640333e-05
## SeedAl                5.270922e-01 5.564541e-03 2.510942e-01 3.727084e-01
## SeedB                 1.345914e-01 4.591043e-01 7.053316e-02 8.959012e-02
## SeedCo                1.331342e-02 4.589101e-03 5.704089e-01 2.247277e-01
## SeedCu                4.484853e-01 2.388347e-05 8.264537e-01 3.216368e-05
## SeedFe                2.977550e-01 2.564148e-01 5.647629e-02 3.819009e-02
## SeedK                 4.101899e-02 1.231623e-02 8.772414e-02 2.997323e-01
## SeedMg                4.478929e-03 1.019972e-03 2.712490e-01 1.166965e-01
## SeedMn                3.902201e-02 1.597108e-02 2.071711e-02 3.929697e-02
## SeedMo                9.514135e-01 9.143467e-03 8.573485e-08 1.672337e-01
## SeedNi                4.390595e-02 1.831156e-02 5.907107e-02 8.619852e-01
## SeedP                 3.047984e-01 2.136000e-06 9.993502e-01 1.355455e-07
## SeedS                 9.978160e-03 7.042103e-03 9.350007e-01 3.379911e-01
## SeedZn                1.121870e-02 1.325155e-02 5.538337e-03 1.364500e-01
## SoilAl                2.063014e-01 8.030134e-01 1.461978e-09 8.161267e-01
## SoilB                 6.822649e-01 3.687444e-01 2.564459e-02 4.394178e-02
## SoilCa                2.297667e-01 5.255699e-01 2.941081e-01 3.020725e-04
## SoilCo                4.678691e-01 3.731124e-01 1.471802e-01 6.464203e-02
## SoilCu                2.238593e-01 5.560720e-01 4.563705e-01 3.304700e-07
## SoilFe                4.943105e-01 9.749811e-01 8.225832e-05 7.796976e-01
## SoilK                 3.417522e-01 9.548662e-02 3.313528e-01 2.342918e-01
## SoilMg                3.308912e-01 9.520902e-02 3.703416e-01 2.000535e-01
## SoilMn                2.852540e-02 8.844033e-01 1.232476e-05 2.891089e-01
## SoilMo                3.689511e-01 6.775337e-01 3.230612e-03 2.726495e-02
## SoilNi                4.934131e-01 4.985380e-01 2.708695e-01 1.758248e-01
## SoilP                 3.301750e-01 7.147953e-01 3.631301e-01 9.604759e-02
## SoilS                 5.498576e-03 6.963395e-01 8.561094e-01 3.232358e-01
## SoilZn                8.226560e-01 6.475205e-03 3.715725e-01 3.599810e-02
## BinePerPlantAl        3.906745e-02 1.560270e-03 1.831849e-01 1.360965e-05
## BinePerPlantB         5.599894e-02 3.500957e-01 1.424032e-01 5.602082e-01
## BinePerPLantCa        2.813280e-02 4.105176e-02 3.176495e-01 8.710135e-02
## BinePerPlantCo        7.024987e-02 5.307062e-03 3.278071e-01 6.340316e-05
## BinePerPlantCu        8.415083e-02 8.134344e-02 9.633688e-03 3.873245e-04
## BinePerPlantFe        3.205012e-01 5.793751e-03 2.882361e-01 1.208475e-06
## BinePerPlantK         6.734791e-02 1.180019e-03 8.885569e-01 6.145828e-10
## BinePerPlantMg        2.786900e-01 7.734752e-02 4.669526e-05 1.550046e-01
## BinePerPlantMn        3.532243e-01 1.366323e-01 4.492333e-10 1.025331e-01
## BinePerPlantMo        6.280195e-02 3.929679e-01 1.714965e-12 4.232026e-01
## BinePerPlantNi        5.533594e-02 2.092443e-03 8.625682e-01 7.651411e-06
## BinePerPlantP         8.282992e-02 8.434370e-01 3.153363e-01 1.663900e-01
## BinePerPlantSe        1.555519e-02 1.018734e-01 1.247495e-03 1.214072e-02
## BinePerPLantZn        8.156549e-01 1.254300e-01 7.018069e-06 2.073057e-01
## SeedPerPlantAl        1.670009e-02 8.036496e-02 3.621123e-01 3.811278e-06
## SeedPerPlantB         1.311526e-02 1.427942e-01 8.663454e-01 1.365039e-05
## SeedPerPlantCa        9.898726e-04 5.388973e-01 6.632340e-01 2.778268e-01
## SeedPerPlantCo        5.621777e-04 6.403515e-01 5.323772e-01 4.844783e-02
## SeedPerPlantCu        5.102076e-03 9.529130e-01 1.033209e-01 1.477427e-01
## SeedPerPlantFe        1.609419e-02 3.855198e-01 7.211243e-01 4.965137e-02
## SeedPerPlantK         9.797712e-03 3.399254e-01 5.408915e-01 5.153576e-05
## SeedPerPlantMg        2.602017e-03 5.567117e-01 2.925874e-01 7.411844e-03
## SeedPerPlantMn        2.563340e-03 9.181144e-01 7.209056e-01 5.241324e-02
## SeedPerPlantMo        1.216252e-01 6.032831e-01 5.456942e-06 2.351691e-02
## SeedPerPlantNi        6.299552e-03 9.483905e-01 5.588253e-01 4.628849e-03
## SeedPerPlantP         4.222379e-03 6.224236e-01 8.872736e-02 5.967239e-01
## SeedPerPlantS         1.164972e-02 3.858296e-01 2.106091e-01 2.474095e-03
## SeedPerPlantZn        9.827060e-04 7.348888e-01 7.904461e-01 8.602889e-03
## BineSeedPerPlantAl    1.670009e-02 8.036496e-02 3.621123e-01 3.811278e-06
## BineSeedPerPlantB     3.334888e-02 1.700334e-03 2.011131e-01 8.461478e-06
## BineSeedPerPlantCa    1.717322e-02 4.720278e-01 2.176595e-01 7.569761e-01
## BineSeedPerPlantCo    2.011062e-02 5.324933e-02 3.172851e-01 7.694480e-02
## BineSeedPerPlantCu    4.317635e-03 7.913804e-01 1.343727e-01 8.993896e-02
## BineSeedPerPlantFe    1.433738e-02 3.445461e-01 6.227572e-01 3.444383e-02
## BineSeedPerPlantK     1.656236e-01 5.690588e-03 3.753153e-01 5.915650e-08
## BineSeedPerPlantMg    2.257306e-02 3.458213e-03 7.159835e-01 1.955172e-09
## BineSeedPerPlantMo    2.692025e-03 7.276334e-01 3.750993e-01 4.166338e-02
## BineSeedPerPlantNi    1.862406e-01 9.317156e-02 2.274687e-07 2.551381e-02
## BineSeedPerPlantP     5.653784e-03 4.278182e-01 3.593869e-12 8.442703e-01
## BineSeedPerPlantS     3.468977e-03 8.322708e-01 1.059768e-01 3.827288e-01
## BineSeedPerPlantS.1   1.926021e-02 6.548575e-01 1.990589e-01 2.977540e-02
## BineSeedPerPlantZn    9.476208e-04 7.214189e-01 8.215385e-01 8.229743e-03
##                              Nit15  NitPerPlant Nit15PerPlant      NitSeed
## BineM                 2.627838e-07 4.159787e-09  8.647113e-01 1.076526e-01
## SeedM                 2.860928e-09 1.734642e-05  2.251138e-01 4.371717e-01
## BineSeedM             1.678371e-09 1.177882e-07  4.201862e-01 7.973062e-01
## SeedN                 1.319500e-03 1.540250e-04  7.939532e-01 8.895170e-03
## SeedMOne              1.908160e-04 4.603014e-03  5.210818e-01 6.460111e-04
## NodPerPlant           8.831885e-01 6.221065e-01  2.707238e-01 2.877384e-02
## NodPerPlant.1         1.641483e-02 1.933406e-01  1.088125e-01 1.755745e-01
## Mic                   1.626954e-01 6.897925e-02  8.937536e-01 7.884334e-01
## Ves                   3.279805e-01 2.730526e-01  9.816128e-01 8.139509e-01
## Arb                   3.241944e-02 2.569171e-02  9.424641e-01 3.801017e-01
## pH                    2.361596e-01 7.786770e-01  6.992481e-02 6.839225e-02
## NitBine               8.399209e-05 5.692845e-01  2.369514e-03 4.941641e-04
## Nit15                 0.000000e+00 8.263281e-03  1.162197e-08 3.729885e-01
## NitPerPlant           8.263281e-03 0.000000e+00  1.003258e-04 3.009781e-01
## Nit15PerPlant         1.162197e-08 1.003258e-04  0.000000e+00 9.585211e-01
## NitSeed               3.729885e-01 3.009781e-01  9.585211e-01 0.000000e+00
## NitSeed15             5.824581e-08 6.090817e-06  4.822638e-01 9.099369e-03
## NitSeedPerPlant       6.400660e-09 1.655466e-05  2.468964e-01 1.114233e-02
## Nit15SeedPerPlant     1.438410e-01 4.824122e-04  9.615888e-02 2.922395e-01
## NitBineSeedPerPlant   8.543277e-09 3.144617e-07  5.019812e-01 1.260850e-02
## Nit15BineSeedPerPlant 4.849131e-01 4.514795e-06  2.016872e-06 3.854942e-01
## BineAl                4.263050e-04 1.314950e-02  2.931060e-01 7.331820e-04
## BineB                 1.887834e-03 8.167929e-02  1.254555e-01 2.944652e-04
## BineCa                1.702860e-01 3.631514e-01  1.888098e-02 7.371555e-06
## BineCo                1.125461e-02 5.214664e-02  5.523773e-01 1.259498e-02
## BineCu                3.326981e-06 1.497282e-03  1.758995e-01 1.332868e-01
## BineFe                2.192472e-03 6.107498e-06  2.869216e-01 5.900874e-01
## BineK                 5.249169e-06 3.334440e-02  7.868120e-02 5.846227e-01
## BineMg                3.683889e-04 5.529723e-03  5.392229e-01 9.523567e-03
## BineMn                6.629924e-01 3.614579e-01  5.626458e-01 6.118898e-02
## BineMo                5.788134e-05 4.188662e-01  3.996225e-07 3.496059e-01
## BineNi                4.315117e-03 1.603484e-01  1.624331e-01 2.020687e-04
## BineP                 2.783780e-06 1.292021e-04  4.622355e-01 1.822729e-01
## BineS                 1.354745e-03 1.608979e-01  4.794658e-02 1.880375e-02
## BineZn                5.610550e-03 1.180256e-02  8.991761e-01 5.547664e-01
## SeedAl                1.047446e-02 7.201373e-05  2.047705e-01 5.705057e-02
## SeedB                 9.113147e-01 7.947405e-01  9.460142e-01 4.427388e-01
## SeedCo                2.469668e-01 6.003671e-01  1.292138e-01 4.571770e-01
## SeedCu                1.094029e-01 3.546417e-04  1.880241e-01 5.391487e-02
## SeedFe                6.064964e-01 6.821187e-01  4.564312e-01 3.657904e-02
## SeedK                 6.816193e-02 7.454489e-02  7.853029e-04 8.938128e-01
## SeedMg                2.187029e-01 2.221970e-01  2.471794e-02 1.808628e-02
## SeedMn                7.363059e-01 7.797488e-01  7.175511e-01 1.432733e-01
## SeedMo                2.882744e-01 6.023673e-02  7.718181e-01 2.683105e-01
## SeedNi                2.670120e-01 3.519667e-04  2.609902e-02 6.330737e-01
## SeedP                 7.543415e-02 1.157500e-03  3.605527e-01 4.811336e-03
## SeedS                 4.698752e-03 7.696553e-01  7.233489e-03 8.274410e-03
## SeedZn                9.241256e-01 7.456309e-01  8.096439e-01 5.456791e-01
## SoilAl                1.997516e-01 4.425149e-02  2.159575e-03 4.487984e-01
## SoilB                 6.028021e-01 3.716003e-01  8.256779e-01 1.818544e-01
## SoilCa                4.971269e-01 9.810376e-01  8.868443e-01 4.153288e-02
## SoilCo                8.135614e-01 4.712441e-01  7.727013e-01 6.962251e-01
## SoilCu                1.217540e-01 9.692018e-01  7.651022e-02 1.098642e-01
## SoilFe                8.250728e-01 7.039149e-01  2.389926e-01 8.549230e-01
## SoilK                 4.302668e-03 1.895262e-05  3.028009e-01 3.294541e-01
## SoilMg                2.473677e-03 1.924449e-05  3.810417e-01 3.530141e-01
## SoilMn                4.310201e-01 1.365776e-01  8.223261e-01 7.840805e-01
## SoilMo                7.751516e-01 2.323489e-01  6.433909e-01 2.028566e-01
## SoilNi                9.841661e-01 3.388779e-01  9.278517e-01 7.786241e-01
## SoilP                 3.310583e-01 6.501416e-01  9.445555e-01 2.637670e-01
## SoilS                 6.828917e-01 1.077652e-01  5.517928e-01 4.948461e-01
## SoilZn                7.146355e-01 2.220285e-04  2.140115e-02 4.253990e-01
## BinePerPlantAl        4.675483e-05 1.006295e-13  2.266859e-01 7.285713e-01
## BinePerPlantB         2.733402e-01 3.239943e-10  3.352521e-04 1.119663e-01
## BinePerPLantCa        2.013450e-04 2.492275e-17  3.248872e-02 1.624875e-01
## BinePerPlantCo        2.168507e-06 7.643619e-14  4.977348e-01 5.600998e-01
## BinePerPlantCu        5.769171e-03 3.344922e-10  7.277604e-02 3.512500e-01
## BinePerPlantFe        7.630697e-03 3.452431e-04  9.984760e-01 2.464360e-01
## BinePerPlantK         2.407793e-05 1.511438e-11  4.314384e-01 7.949949e-02
## BinePerPlantMg        1.563160e-02 1.743801e-10  7.779348e-02 7.652422e-01
## BinePerPlantMn        7.876810e-03 1.895465e-04  9.107984e-01 9.984832e-01
## BinePerPlantMo        1.554352e-02 1.469690e-02  3.264213e-07 6.529880e-01
## BinePerPlantNi        2.177260e-06 1.099452e-15  3.337945e-01 7.254336e-01
## BinePerPlantP         1.882059e-01 1.722796e-08  1.414057e-02 5.347190e-01
## BinePerPlantSe        1.009832e-03 1.474841e-15  1.853065e-02 5.867733e-01
## BinePerPLantZn        1.267157e-01 6.204478e-05  2.371280e-01 4.435974e-01
## SeedPerPlantAl        8.944122e-09 3.056529e-04  8.414823e-02 8.779574e-01
## SeedPerPlantB         6.691295e-06 2.950598e-04  3.905614e-01 9.497413e-01
## SeedPerPlantCa        1.005668e-04 1.772726e-03  5.014112e-01 5.382768e-02
## SeedPerPlantCo        1.688565e-07 9.978854e-03  3.527043e-02 2.811052e-01
## SeedPerPlantCu        5.532680e-07 4.635166e-03  1.204515e-01 3.362014e-02
## SeedPerPlantFe        8.239059e-07 1.725753e-03  1.631711e-01 1.027955e-01
## SeedPerPlantK         7.286262e-10 5.785351e-03  1.206994e-02 5.637507e-01
## SeedPerPlantMg        7.954193e-09 2.325877e-03  4.041300e-02 1.277466e-01
## SeedPerPlantMn        4.003375e-06 1.186032e-03  2.998974e-01 2.354806e-01
## SeedPerPlantMo        4.499922e-04 1.420540e-01  1.259330e-01 5.225484e-01
## SeedPerPlantNi        1.083892e-03 4.521849e-01  2.521425e-02 5.987715e-01
## SeedPerPlantP         9.481481e-06 8.837397e-03  1.884596e-01 5.454637e-03
## SeedPerPlantS         1.592142e-09 3.210782e-03  2.499701e-02 1.289826e-01
## SeedPerPlantZn        2.203402e-06 2.757362e-04  3.980132e-01 5.326631e-01
## BineSeedPerPlantAl    8.944122e-09 3.056529e-04  8.414823e-02 8.779574e-01
## BineSeedPerPlantB     2.814046e-05 1.256281e-13  2.610564e-01 7.395109e-01
## BineSeedPerPlantCa    8.282887e-02 1.401620e-10  2.290366e-03 6.821286e-02
## BineSeedPerPlantCo    9.443630e-05 1.664149e-16  5.478565e-02 1.583194e-01
## BineSeedPerPlantCu    1.399277e-07 1.155884e-03  1.477916e-01 4.495898e-02
## BineSeedPerPlantFe    6.138523e-07 6.772450e-04  2.091095e-01 1.247141e-01
## BineSeedPerPlantK     3.808725e-04 9.658205e-05  6.623380e-01 3.254280e-01
## BineSeedPerPlantMg    4.067954e-07 4.079380e-11  8.314136e-01 2.481954e-01
## BineSeedPerPlantMo    2.170653e-06 7.741764e-05  4.698877e-01 2.458803e-01
## BineSeedPerPlantNi    2.681804e-04 1.451378e-05  8.230672e-01 8.842821e-01
## BineSeedPerPlantP     2.434532e-01 9.066102e-03  1.206256e-04 8.064537e-01
## BineSeedPerPlantS     2.444340e-06 1.829787e-03  2.398908e-01 8.627300e-03
## BineSeedPerPlantS.1   3.804025e-03 8.221869e-10  1.508917e-01 9.404080e-01
## BineSeedPerPlantZn    2.048986e-06 2.134042e-04  4.174821e-01 5.398152e-01
##                          NitSeed15 NitSeedPerPlant Nit15SeedPerPlant
## BineM                 1.053072e-07    1.301900e-09      2.171347e-03
## SeedM                 2.517244e-14    2.644472e-38      3.582088e-07
## BineSeedM             1.287651e-12    1.918494e-22      8.667505e-06
## SeedN                 2.657828e-04    1.271378e-04      2.701152e-02
## SeedMOne              1.931833e-10    6.721596e-15      2.591632e-06
## NodPerPlant           1.924655e-05    6.974592e-02      9.821613e-01
## NodPerPlant.1         4.206655e-01    8.287707e-02      3.283769e-01
## Mic                   7.075429e-02    3.784840e-01      6.364891e-01
## Ves                   1.369895e-01    5.613765e-02      3.846067e-02
## Arb                   5.251667e-03    4.650215e-02      9.290116e-01
## pH                    6.652944e-01    2.150381e-01      5.635805e-01
## NitBine               1.211781e-02    3.493539e-03      4.259977e-01
## Nit15                 5.824581e-08    6.400660e-09      1.438410e-01
## NitPerPlant           6.090817e-06    1.655466e-05      4.824122e-04
## Nit15PerPlant         4.822638e-01    2.468964e-01      9.615888e-02
## NitSeed               9.099369e-03    1.114233e-02      2.922395e-01
## NitSeed15             0.000000e+00    1.246299e-15      4.049431e-02
## NitSeedPerPlant       1.246299e-15    0.000000e+00      4.863459e-07
## Nit15SeedPerPlant     4.049431e-02    4.863459e-07      0.000000e+00
## NitBineSeedPerPlant   3.024801e-16    7.080759e-62      2.576024e-07
## Nit15BineSeedPerPlant 1.492063e-01    3.560090e-04      8.622320e-27
## BineAl                4.138181e-02    4.302545e-04      9.325318e-02
## BineB                 3.158226e-01    2.484675e-02      6.133294e-01
## BineCa                9.506941e-02    3.867432e-01      1.282990e-01
## BineCo                1.344524e-03    1.210142e-03      6.181736e-01
## BineCu                5.345458e-07    9.494570e-06      8.760311e-02
## BineFe                9.485194e-08    1.781391e-07      1.270284e-02
## BineK                 1.368291e-08    2.142893e-08      5.345308e-02
## BineMg                2.079643e-05    1.628971e-06      1.220930e-01
## BineMn                5.553305e-01    6.128176e-02      8.424253e-01
## BineMo                9.310516e-01    8.384447e-01      2.095519e-01
## BineNi                6.395743e-02    2.213365e-02      8.914602e-01
## BineP                 6.457015e-11    6.738350e-08      3.931020e-02
## BineS                 4.879032e-02    1.281675e-02      4.171883e-01
## BineZn                4.627705e-07    1.472944e-07      1.311339e-01
## SeedAl                6.204064e-09    1.566388e-07      6.459254e-05
## SeedB                 3.109441e-01    7.106241e-01      4.490306e-02
## SeedCo                2.752629e-01    3.977744e-01      2.511978e-03
## SeedCu                4.925017e-03    5.303414e-03      9.305443e-02
## SeedFe                9.020128e-01    7.656567e-01      5.072709e-02
## SeedK                 2.458021e-01    4.079821e-01      6.733156e-02
## SeedMg                8.933648e-01    1.490172e-01      1.372652e-01
## SeedMn                7.896778e-01    6.271585e-01      1.641795e-03
## SeedMo                6.428613e-03    6.445901e-01      8.159635e-01
## SeedNi                1.938690e-02    4.496372e-01      8.244606e-01
## SeedP                 1.390358e-02    3.004457e-02      2.951001e-01
## SeedS                 1.220681e-01    1.504094e-03      2.891921e-02
## SeedZn                8.927162e-01    7.288986e-01      1.678510e-01
## SoilAl                6.361652e-01    1.492066e-01      2.476646e-01
## SoilB                 3.336735e-01    1.384332e-01      5.937586e-01
## SoilCa                2.134241e-01    4.326253e-01      3.180532e-01
## SoilCo                7.002176e-02    3.135096e-01      4.793910e-01
## SoilCu                3.963675e-01    3.955366e-01      3.361183e-01
## SoilFe                4.038940e-01    3.833493e-02      6.049728e-03
## SoilK                 4.996040e-10    1.441326e-09      7.220997e-05
## SoilMg                4.408498e-10    1.171403e-09      7.332599e-05
## SoilMn                3.610059e-01    5.872871e-01      5.282112e-01
## SoilMo                4.776692e-01    3.683674e-01      9.757961e-01
## SoilNi                8.126602e-02    5.680243e-01      7.819437e-01
## SoilP                 8.986218e-04    1.991217e-01      8.296083e-01
## SoilS                 6.540396e-01    5.384687e-01      7.975513e-01
## SoilZn                5.086759e-02    1.473484e-01      5.977514e-01
## BinePerPlantAl        5.937317e-08    1.942423e-06      1.308471e-03
## BinePerPlantB         1.149821e-05    6.122310e-03      1.292357e-03
## BinePerPLantCa        5.441099e-14    2.764867e-13      3.583268e-06
## BinePerPlantCo        1.592485e-05    8.419669e-07      7.434936e-05
## BinePerPlantCu        8.701765e-04    1.517805e-05      2.385459e-03
## BinePerPlantFe        1.063841e-01    8.991809e-02      1.496049e-01
## BinePerPlantK         8.786891e-06    1.234087e-06      2.978958e-03
## BinePerPlantMg        4.100276e-02    9.909177e-02      4.611473e-03
## BinePerPlantMn        4.205778e-02    2.101258e-01      1.849414e-02
## BinePerPlantMo        8.706802e-02    1.703942e-01      1.285461e-01
## BinePerPlantNi        1.806971e-08    1.565519e-09      6.515642e-05
## BinePerPlantP         5.717214e-01    7.635348e-02      9.402755e-03
## BinePerPlantSe        1.249768e-07    1.847547e-07      7.487694e-04
## BinePerPLantZn        9.619941e-01    8.761227e-01      7.399232e-02
## SeedPerPlantAl        3.770000e-08    5.285547e-18      1.215700e-06
## SeedPerPlantB         8.609352e-07    3.001075e-14      4.091336e-07
## SeedPerPlantCa        4.510612e-07    3.772686e-15      2.521256e-11
## SeedPerPlantCo        1.096555e-05    5.673756e-13      7.780988e-08
## SeedPerPlantCu        6.657836e-10    1.865400e-16      4.931292e-06
## SeedPerPlantFe        1.662289e-08    2.112600e-14      7.659851e-08
## SeedPerPlantK         2.846611e-08    6.905592e-20      7.745784e-07
## SeedPerPlantMg        5.949807e-10    5.565633e-23      1.926601e-06
## SeedPerPlantMn        4.044253e-08    3.142040e-13      2.925155e-10
## SeedPerPlantMo        2.542212e-04    1.210318e-12      1.041307e-03
## SeedPerPlantNi        4.879465e-03    5.683674e-08      3.898267e-04
## SeedPerPlantP         7.849290e-09    3.144391e-15      3.487559e-06
## SeedPerPlantS         2.793658e-10    6.411650e-26      4.767522e-06
## SeedPerPlantZn        7.174653e-09    5.639115e-13      3.050406e-08
## BineSeedPerPlantAl    3.770000e-08    5.285547e-18      1.215700e-06
## BineSeedPerPlantB     3.109667e-08    5.738039e-07      7.416181e-04
## BineSeedPerPlantCa    3.947503e-07    1.116666e-04      2.786453e-05
## BineSeedPerPlantCo    3.799795e-14    3.181319e-14      1.490655e-06
## BineSeedPerPlantCu    1.583359e-10    1.008508e-17      1.903691e-06
## BineSeedPerPlantFe    9.906789e-09    5.581748e-15      5.179171e-08
## BineSeedPerPlantK     1.513685e-02    4.316875e-03      2.936323e-02
## BineSeedPerPlantMg    7.992061e-08    2.076041e-10      2.315924e-04
## BineSeedPerPlantMo    3.797912e-08    1.493843e-12      1.167144e-10
## BineSeedPerPlantNi    2.918506e-03    7.132129e-03      1.142126e-03
## BineSeedPerPlantP     8.155836e-03    1.873969e-03      6.962220e-03
## BineSeedPerPlantS     8.090583e-10    4.811618e-17      1.217134e-06
## BineSeedPerPlantS.1   2.525086e-02    5.608667e-05      1.637797e-04
## BineSeedPerPlantZn    5.651432e-09    4.220375e-13      2.844884e-08
##                       NitBineSeedPerPlant Nit15BineSeedPerPlant       BineAl
## BineM                        9.592183e-11          1.289857e-02 3.271017e-12
## SeedM                        4.024084e-37          3.334681e-04 3.913589e-06
## BineSeedM                    4.950142e-24          9.754174e-04 2.561218e-09
## SeedN                        5.289828e-05          4.990483e-02 8.766065e-11
## SeedMOne                     2.643235e-14          3.709047e-04 8.712489e-01
## NodPerPlant                  7.947475e-02          6.597067e-01 7.123651e-02
## NodPerPlant.1                7.630264e-02          8.318318e-01 1.052709e-04
## Mic                          3.039841e-01          7.282175e-01 6.811554e-02
## Ves                          5.563445e-02          8.055337e-02 8.361744e-01
## Arb                          3.409613e-02          9.621317e-01 1.107317e-02
## pH                           2.329133e-01          2.377071e-01 1.485945e-03
## NitBine                      5.200722e-03          6.501865e-01 8.052290e-13
## Nit15                        8.543277e-09          4.849131e-01 4.263050e-04
## NitPerPlant                  3.144617e-07          4.514795e-06 1.314950e-02
## Nit15PerPlant                5.019812e-01          2.016872e-06 2.931060e-01
## NitSeed                      1.260850e-02          3.854942e-01 7.331820e-04
## NitSeed15                    3.024801e-16          1.492063e-01 4.138181e-02
## NitSeedPerPlant              7.080759e-62          3.560090e-04 4.302545e-04
## Nit15SeedPerPlant            2.576024e-07          8.622320e-27 9.325318e-02
## NitBineSeedPerPlant          0.000000e+00          1.049489e-04 3.286174e-04
## Nit15BineSeedPerPlant        1.049489e-04          0.000000e+00 3.161613e-01
## BineAl                       3.286174e-04          3.161613e-01 0.000000e+00
## BineB                        2.135144e-02          8.753852e-01 1.701622e-17
## BineCa                       3.611480e-01          2.798723e-02 1.374977e-07
## BineCo                       1.120674e-03          8.474254e-01 3.051638e-13
## BineCu                       5.701816e-06          3.620267e-01 9.032497e-07
## BineFe                       4.516772e-08          1.161032e-02 1.246198e-04
## BineK                        4.107002e-08          3.464492e-01 3.887145e-07
## BineMg                       1.363492e-06          2.884204e-01 3.877547e-18
## BineMn                       6.336978e-02          6.963739e-01 7.584113e-10
## BineMo                       9.197347e-01          3.654368e-03 2.975740e-01
## BineNi                       2.121353e-02          6.763146e-01 1.993227e-16
## BineP                        2.888196e-08          1.499635e-01 8.914961e-08
## BineS                        1.269622e-02          9.485883e-01 1.289829e-07
## BineZn                       1.730757e-07          2.219694e-01 2.137187e-08
## SeedAl                       5.953462e-08          1.063343e-04 1.570490e-01
## SeedB                        7.063128e-01          8.693379e-02 3.856580e-01
## SeedCo                       4.635172e-01          5.655439e-02 4.147020e-01
## SeedCu                       2.516937e-03          5.314445e-02 2.427549e-04
## SeedFe                       8.154286e-01          1.777047e-01 2.568656e-02
## SeedK                        5.639636e-01          7.701189e-01 5.940232e-01
## SeedMg                       2.255063e-01          6.903290e-01 6.962811e-02
## SeedMn                       6.717629e-01          1.337151e-02 2.979724e-03
## SeedMo                       5.220231e-01          7.580951e-01 1.690759e-01
## SeedNi                       2.750679e-01          3.034588e-01 2.116171e-01
## SeedP                        1.646230e-02          2.157067e-01 1.315779e-05
## SeedS                        3.487351e-03          4.187950e-01 7.604491e-01
## SeedZn                       7.180110e-01          2.856947e-01 7.447502e-03
## SoilAl                       1.146415e-01          3.196188e-02 1.079252e-03
## SoilB                        1.364395e-01          7.148297e-01 7.746280e-01
## SoilCa                       4.639196e-01          4.313949e-01 4.011186e-02
## SoilCo                       3.883451e-01          4.787265e-01 1.532129e-01
## SoilCu                       4.235896e-01          8.908524e-01 6.642762e-05
## SoilFe                       4.757411e-02          5.359489e-03 1.213426e-01
## SoilK                        4.379350e-10          1.801262e-04 6.995394e-02
## SoilMg                       3.574409e-10          2.403943e-04 6.125387e-02
## SoilMn                       7.315656e-01          6.557993e-01 8.886249e-01
## SoilMo                       3.286197e-01          8.388197e-01 6.931141e-06
## SoilNi                       6.686787e-01          8.423815e-01 1.594513e-01
## SoilP                        2.098649e-01          8.348996e-01 2.640786e-02
## SoilS                        4.499961e-01          6.561536e-01 1.463844e-01
## SoilZn                       7.855384e-02          1.870837e-01 1.140884e-02
## BinePerPlantAl               1.089113e-07          1.402235e-03 2.845590e-03
## BinePerPlantB                1.251573e-03          2.606024e-05 4.938829e-01
## BinePerPLantCa               7.528009e-16          1.371072e-06 7.925728e-03
## BinePerPlantCo               4.212672e-08          3.434095e-04 9.110472e-05
## BinePerPlantCu               1.741743e-06          9.883925e-04 1.983671e-07
## BinePerPlantFe               4.744414e-02          2.252510e-01 2.821165e-04
## BinePerPlantK                9.072476e-08          4.961291e-03 1.619725e-09
## BinePerPlantMg               2.944447e-02          1.905360e-03 4.600431e-01
## BinePerPlantMn               1.147196e-01          4.335166e-02 6.980366e-01
## BinePerPlantMo               1.195297e-01          1.554713e-03 1.152154e-01
## BinePerPlantNi               2.616263e-11          1.866474e-04 6.513732e-06
## BinePerPlantP                2.507425e-02          1.456656e-03 2.373927e-03
## BinePerPlantSe               6.098860e-09          1.310825e-04 1.229626e-05
## BinePerPLantZn               7.845970e-01          4.860303e-02 7.816089e-01
## SeedPerPlantAl               9.711025e-18          1.390530e-03 1.315577e-06
## SeedPerPlantB                2.883431e-14          1.919708e-04 2.159629e-05
## SeedPerPlantCa               9.617489e-15          8.471602e-07 1.221195e-01
## SeedPerPlantCo               1.987831e-12          6.834309e-04 1.380824e-02
## SeedPerPlantCu               1.145857e-15          2.176877e-03 1.921210e-02
## SeedPerPlantFe               4.504178e-14          2.097392e-04 2.310796e-02
## SeedPerPlantK                1.636265e-18          3.303384e-03 2.307100e-05
## SeedPerPlantMg               2.083759e-21          2.722023e-03 2.134149e-03
## SeedPerPlantMn               4.513036e-13          6.816663e-06 7.180938e-02
## SeedPerPlantMo               1.766530e-11          3.548380e-02 2.810618e-05
## SeedPerPlantNi               3.146393e-07          4.196459e-02 6.032275e-03
## SeedPerPlantP                1.960866e-14          1.288363e-03 1.092712e-01
## SeedPerPlantS                1.375845e-23          5.302717e-03 2.505555e-04
## SeedPerPlantZn               4.464690e-13          4.630437e-05 1.276239e-02
## BineSeedPerPlantAl           9.711025e-18          1.390530e-03 1.315577e-06
## BineSeedPerPlantB            2.828398e-08          9.962938e-04 1.861894e-03
## BineSeedPerPlantCa           1.448967e-05          1.119071e-06 7.560063e-01
## BineSeedPerPlantCo           6.744109e-17          1.091343e-06 6.720660e-03
## BineSeedPerPlantCu           3.788476e-17          1.148090e-03 1.031702e-02
## BineSeedPerPlantFe           8.645723e-15          1.345360e-04 1.249695e-02
## BineSeedPerPlantK            1.815240e-03          9.810606e-02 2.367553e-05
## BineSeedPerPlantMg           7.261820e-12          1.648433e-03 1.962860e-09
## BineSeedPerPlantMo           7.411262e-13          2.042046e-06 7.130417e-02
## BineSeedPerPlantNi           2.640935e-03          8.911164e-03 6.381248e-01
## BineSeedPerPlantP            1.287561e-03          1.304517e-04 1.294443e-02
## BineSeedPerPlantS            1.993908e-16          5.942077e-04 5.545227e-02
## BineSeedPerPlantS.1          7.635374e-06          1.684275e-04 8.973166e-05
## BineSeedPerPlantZn           3.095844e-13          4.160866e-05 1.148247e-02
##                              BineB       BineCa       BineCo       BineCu
## BineM                 1.186995e-10 6.585652e-04 3.623929e-10 4.091990e-14
## SeedM                 1.082446e-03 9.030738e-01 3.114072e-05 5.314457e-08
## BineSeedM             1.605944e-06 1.175478e-01 8.087920e-08 1.079105e-11
## SeedN                 9.770748e-09 4.492061e-04 4.197235e-09 6.236152e-08
## SeedMOne              1.593502e-01 1.727637e-05 9.157359e-01 4.685122e-02
## NodPerPlant           5.376316e-02 6.112391e-04 3.310455e-01 5.827366e-02
## NodPerPlant.1         3.117137e-04 1.413728e-03 3.051027e-01 6.467852e-01
## Mic                   6.166576e-02 8.538303e-02 3.948282e-02 3.586186e-04
## Ves                   8.292461e-01 5.521243e-01 7.703393e-01 7.330960e-01
## Arb                   8.205825e-03 5.380795e-02 6.825323e-03 9.774436e-06
## pH                    1.081880e-01 8.619755e-01 1.642402e-02 1.996351e-01
## NitBine               2.886647e-15 2.936696e-12 2.656756e-12 1.148085e-11
## Nit15                 1.887834e-03 1.702860e-01 1.125461e-02 3.326981e-06
## NitPerPlant           8.167929e-02 3.631514e-01 5.214664e-02 1.497282e-03
## Nit15PerPlant         1.254555e-01 1.888098e-02 5.523773e-01 1.758995e-01
## NitSeed               2.944652e-04 7.371555e-06 1.259498e-02 1.332868e-01
## NitSeed15             3.158226e-01 9.506941e-02 1.344524e-03 5.345458e-07
## NitSeedPerPlant       2.484675e-02 3.867432e-01 1.210142e-03 9.494570e-06
## Nit15SeedPerPlant     6.133294e-01 1.282990e-01 6.181736e-01 8.760311e-02
## NitBineSeedPerPlant   2.135144e-02 3.611480e-01 1.120674e-03 5.701816e-06
## Nit15BineSeedPerPlant 8.753852e-01 2.798723e-02 8.474254e-01 3.620267e-01
## BineAl                1.701622e-17 1.374977e-07 3.051638e-13 9.032497e-07
## BineB                 0.000000e+00 6.602623e-16 2.610771e-13 5.248323e-08
## BineCa                6.602623e-16 0.000000e+00 1.235919e-07 1.155718e-03
## BineCo                2.610771e-13 1.235919e-07 0.000000e+00 2.965681e-12
## BineCu                5.248323e-08 1.155718e-03 2.965681e-12 0.000000e+00
## BineFe                1.444891e-03 8.345023e-01 1.377078e-08 7.302735e-10
## BineK                 3.027035e-05 6.268174e-02 1.013286e-11 4.795076e-12
## BineMg                1.749444e-14 3.545332e-05 6.164789e-24 1.790308e-10
## BineMn                3.170877e-07 2.766172e-03 1.441151e-08 3.055816e-01
## BineMo                7.095143e-03 2.220306e-06 1.904275e-01 1.448339e-04
## BineNi                1.658796e-21 9.846131e-16 1.673878e-28 2.007164e-10
## BineP                 1.159490e-07 5.546729e-03 3.604469e-15 5.174527e-29
## BineS                 4.880359e-12 1.219427e-11 1.237466e-10 8.626959e-16
## BineZn                1.120864e-05 1.863685e-01 2.165918e-17 3.302256e-08
## SeedAl                7.444854e-01 4.437457e-03 2.354566e-01 5.704547e-03
## SeedB                 4.623281e-01 1.257888e-01 7.860842e-01 7.555978e-01
## SeedCo                2.044802e-02 1.963948e-02 1.496326e-04 1.969454e-02
## SeedCu                2.769234e-05 1.327073e-02 4.787936e-05 9.020080e-08
## SeedFe                4.094238e-04 2.297375e-03 1.217848e-02 2.837963e-01
## SeedK                 9.406011e-01 4.299821e-01 3.139584e-01 6.494538e-01
## SeedMg                3.897837e-03 4.768292e-03 5.889909e-03 5.940809e-02
## SeedMn                4.047979e-05 2.490340e-04 7.182917e-05 1.714874e-01
## SeedMo                8.176500e-01 7.169307e-01 5.117554e-01 8.008215e-05
## SeedNi                5.337222e-01 5.559838e-01 7.993433e-02 8.446767e-02
## SeedP                 3.087882e-07 1.502895e-04 6.531620e-07 1.167193e-09
## SeedS                 9.587861e-02 1.187089e-02 7.239315e-02 2.830739e-01
## SeedZn                7.828563e-04 2.913434e-02 4.502616e-03 2.450244e-01
## SoilAl                1.375716e-01 8.500552e-01 1.891239e-02 6.259340e-01
## SoilB                 3.450112e-01 3.425660e-02 7.611436e-01 1.364818e-01
## SoilCa                6.620126e-04 1.735610e-05 4.417078e-03 4.121573e-02
## SoilCo                2.213686e-03 2.614771e-05 5.753587e-01 9.388438e-01
## SoilCu                2.335524e-06 2.143088e-08 1.005682e-03 1.457256e-02
## SoilFe                6.410322e-01 2.720304e-02 7.056848e-01 7.657127e-01
## SoilK                 7.756471e-01 1.391241e-02 2.553668e-02 2.154350e-04
## SoilMg                7.354027e-01 1.810496e-02 2.161877e-02 1.431659e-04
## SoilMn                5.261456e-01 1.170235e-01 6.083425e-01 2.532952e-01
## SoilMo                1.891873e-04 1.035476e-02 1.959160e-04 2.797355e-01
## SoilNi                5.998001e-03 5.456727e-04 5.481336e-01 8.116127e-01
## SoilP                 1.345236e-02 8.018712e-04 9.839788e-01 1.040900e-01
## SoilS                 4.188150e-02 1.989859e-02 4.740344e-01 9.080257e-01
## SoilZn                1.271411e-03 1.630610e-01 2.164110e-04 1.921678e-06
## BinePerPlantAl        4.133077e-04 1.297918e-01 2.449042e-04 1.264894e-10
## BinePerPlantB         1.429556e-02 5.180737e-04 6.774191e-01 9.541677e-02
## BinePerPLantCa        2.344668e-01 2.293260e-02 2.670200e-02 3.575052e-05
## BinePerPlantCo        3.041252e-04 1.793708e-01 4.148621e-02 4.440866e-06
## BinePerPlantCu        7.830593e-05 8.521573e-02 3.241334e-03 4.210676e-02
## BinePerPlantFe        1.415324e-04 4.313216e-04 7.132564e-02 1.076521e-02
## BinePerPlantK         1.129855e-08 1.596254e-03 4.952649e-07 3.249692e-10
## BinePerPlantMg        3.552355e-01 7.475533e-01 8.458095e-01 5.029752e-03
## BinePerPlantMn        8.377413e-01 7.615134e-01 6.116592e-01 4.978976e-04
## BinePerPlantMo        9.464190e-01 1.517234e-02 1.444213e-01 3.588650e-01
## BinePerPlantNi        9.631048e-05 2.553170e-01 7.847432e-04 2.181467e-08
## BinePerPlantP         2.522959e-02 3.306648e-01 9.630546e-01 8.868692e-01
## BinePerPlantSe        3.161693e-03 7.756091e-01 1.948140e-03 1.895213e-03
## BinePerPLantZn        3.604685e-01 1.548045e-01 1.597136e-01 2.146656e-01
## SeedPerPlantAl        8.872012e-05 2.246157e-01 3.371025e-05 1.423231e-07
## SeedPerPlantB         1.301854e-03 2.637029e-01 3.278500e-04 2.427742e-06
## SeedPerPlantCa        8.541959e-01 1.871081e-02 2.261788e-01 5.854044e-03
## SeedPerPlantCo        3.233274e-01 2.182072e-01 3.804030e-01 2.348269e-02
## SeedPerPlantCu        5.093063e-01 4.218341e-02 7.496789e-02 1.753170e-02
## SeedPerPlantFe        4.318822e-01 1.417057e-01 6.731975e-02 1.084351e-03
## SeedPerPlantK         2.731352e-03 5.890199e-01 1.308714e-03 7.791247e-06
## SeedPerPlantMg        9.392419e-02 3.398093e-01 1.856135e-02 4.939876e-04
## SeedPerPlantMn        5.785220e-01 1.017520e-01 2.200079e-01 5.340807e-04
## SeedPerPlantMo        1.125756e-02 9.404803e-01 7.503793e-03 1.763141e-01
## SeedPerPlantNi        4.711458e-02 5.605152e-01 8.478394e-02 3.395610e-02
## SeedPerPlantP         9.169442e-01 3.530645e-03 3.296317e-01 1.206914e-01
## SeedPerPlantS         2.481948e-02 6.185283e-01 6.108861e-03 2.163960e-04
## SeedPerPlantZn        2.773690e-01 3.436887e-01 4.790002e-02 9.869992e-05
## BineSeedPerPlantAl    8.872012e-05 2.246157e-01 3.371025e-05 1.423231e-07
## BineSeedPerPlantB     3.263469e-04 1.272968e-01 1.795451e-04 7.231401e-11
## BineSeedPerPlantCa    3.070014e-02 2.811605e-04 8.926296e-01 3.972360e-02
## BineSeedPerPlantCo    2.281710e-01 2.350589e-02 2.883185e-02 3.755748e-05
## BineSeedPerPlantCu    3.665307e-01 6.354465e-02 5.995334e-02 8.210558e-03
## BineSeedPerPlantFe    3.273362e-01 1.825727e-01 5.092907e-02 9.352691e-04
## BineSeedPerPlantK     3.100492e-05 6.908409e-04 2.347632e-02 1.398154e-03
## BineSeedPerPlantMg    1.305712e-07 1.387313e-02 8.703603e-07 2.034450e-10
## BineSeedPerPlantMo    5.114574e-01 1.358176e-01 2.602101e-01 2.165609e-04
## BineSeedPerPlantNi    4.408479e-01 7.381923e-01 9.578208e-01 5.669227e-05
## BineSeedPerPlantP     5.345792e-01 3.595344e-02 4.417233e-02 8.853291e-01
## BineSeedPerPlantS     8.240660e-01 7.312399e-03 2.217495e-01 5.249271e-02
## BineSeedPerPlantS.1   6.704614e-03 4.830546e-01 3.789503e-01 3.282933e-01
## BineSeedPerPlantZn    2.648363e-01 3.450268e-01 4.508500e-02 9.230749e-05
##                             BineFe        BineK       BineMg       BineMn
## BineM                 9.221922e-08 2.326359e-08 4.518537e-14 1.175390e-02
## SeedM                 6.024761e-09 3.147091e-10 1.973531e-09 2.759137e-02
## BineSeedM             1.458851e-09 9.746133e-11 5.629125e-13 1.314599e-02
## SeedN                 6.267748e-04 7.027482e-05 1.772338e-12 9.827159e-05
## SeedMOne              4.551625e-05 2.343389e-04 1.752964e-01 3.870323e-01
## NodPerPlant           3.194799e-03 7.112724e-03 3.528923e-01 5.674539e-01
## NodPerPlant.1         8.762090e-01 8.632387e-01 9.334352e-02 7.258543e-02
## Mic                   2.551713e-01 1.185888e-02 8.589502e-02 7.287135e-01
## Ves                   4.740626e-01 9.053179e-01 3.806603e-01 5.942813e-01
## Arb                   4.794507e-02 7.454037e-04 5.765545e-03 8.311810e-01
## pH                    4.521026e-02 4.370218e-02 7.632021e-05 2.989945e-15
## NitBine               1.986111e-02 1.876502e-06 3.457526e-12 7.530033e-03
## Nit15                 2.192472e-03 5.249169e-06 3.683889e-04 6.629924e-01
## NitPerPlant           6.107498e-06 3.334440e-02 5.529723e-03 3.614579e-01
## Nit15PerPlant         2.869216e-01 7.868120e-02 5.392229e-01 5.626458e-01
## NitSeed               5.900874e-01 5.846227e-01 9.523567e-03 6.118898e-02
## NitSeed15             9.485194e-08 1.368291e-08 2.079643e-05 5.553305e-01
## NitSeedPerPlant       1.781391e-07 2.142893e-08 1.628971e-06 6.128176e-02
## Nit15SeedPerPlant     1.270284e-02 5.345308e-02 1.220930e-01 8.424253e-01
## NitBineSeedPerPlant   4.516772e-08 4.107002e-08 1.363492e-06 6.336978e-02
## Nit15BineSeedPerPlant 1.161032e-02 3.464492e-01 2.884204e-01 6.963739e-01
## BineAl                1.246198e-04 3.887145e-07 3.877547e-18 7.584113e-10
## BineB                 1.444891e-03 3.027035e-05 1.749444e-14 3.170877e-07
## BineCa                8.345023e-01 6.268174e-02 3.545332e-05 2.766172e-03
## BineCo                1.377078e-08 1.013286e-11 6.164789e-24 1.441151e-08
## BineCu                7.302735e-10 4.795076e-12 1.790308e-10 3.055816e-01
## BineFe                0.000000e+00 2.864112e-11 3.677070e-10 4.273170e-03
## BineK                 2.864112e-11 0.000000e+00 6.481863e-14 2.062962e-03
## BineMg                3.677070e-10 6.481863e-14 0.000000e+00 3.217160e-11
## BineMn                4.273170e-03 2.062962e-03 3.217160e-11 0.000000e+00
## BineMo                7.280205e-01 1.988793e-01 8.103882e-01 1.873193e-03
## BineNi                1.636526e-05 1.103975e-08 3.828713e-20 1.652895e-07
## BineP                 3.317444e-14 1.469481e-16 1.127382e-15 3.681859e-02
## BineS                 5.565151e-03 1.546844e-05 2.548732e-07 3.578320e-01
## BineZn                5.604910e-13 6.204270e-13 2.008178e-18 6.576800e-10
## SeedAl                2.120746e-03 7.893762e-04 1.897799e-02 6.601528e-01
## SeedB                 2.533231e-01 1.102836e-01 8.692937e-01 4.113119e-01
## SeedCo                1.262393e-02 2.454902e-02 1.303804e-02 7.087584e-02
## SeedCu                2.944029e-05 7.753565e-05 1.542280e-05 2.519861e-01
## SeedFe                3.325848e-01 1.161681e-01 7.101444e-03 8.669122e-03
## SeedK                 6.541518e-02 3.683973e-01 3.589925e-01 2.697606e-01
## SeedMg                1.063579e-01 1.492458e-01 1.394114e-02 6.121310e-02
## SeedMn                2.348716e-01 9.710999e-02 2.119394e-03 9.651609e-06
## SeedMo                3.891383e-01 4.360620e-01 6.132383e-01 2.050920e-05
## SeedNi                3.602992e-04 2.821418e-02 3.239368e-02 9.164092e-02
## SeedP                 1.187150e-04 5.190440e-05 1.054618e-06 1.459449e-01
## SeedS                 8.855786e-01 9.177102e-01 4.412070e-01 4.729525e-01
## SeedZn                3.589910e-01 1.483037e-02 3.714085e-03 5.234028e-05
## SoilAl                1.499625e-01 4.321060e-01 2.666624e-03 7.944170e-10
## SoilB                 3.447482e-01 4.043263e-01 8.564834e-01 1.262793e-01
## SoilCa                3.020069e-01 5.646892e-01 9.779568e-02 3.101781e-01
## SoilCo                2.588775e-02 2.135523e-01 8.366739e-01 5.179888e-01
## SoilCu                3.967354e-01 2.225466e-01 7.235523e-03 5.808130e-02
## SoilFe                1.485695e-01 8.721483e-02 1.160991e-01 4.189458e-03
## SoilK                 1.711900e-08 3.594477e-05 3.570586e-03 8.831211e-01
## SoilMg                1.228045e-08 3.603764e-05 2.961739e-03 8.802406e-01
## SoilMn                2.106978e-01 1.218071e-01 1.427210e-01 3.073916e-03
## SoilMo                3.924539e-01 4.440932e-01 7.109455e-04 2.505887e-08
## SoilNi                4.511440e-02 2.501689e-01 8.262845e-01 3.336486e-01
## SoilP                 4.047428e-04 4.908826e-02 7.550828e-01 2.690792e-02
## SoilS                 3.425301e-01 3.524777e-01 6.587043e-01 1.130459e-01
## SoilZn                1.720797e-05 4.110674e-02 2.938880e-03 4.886941e-01
## BinePerPlantAl        1.266913e-05 3.783762e-04 3.717573e-05 9.370495e-01
## BinePerPlantB         3.376824e-02 6.775645e-01 8.730626e-01 1.257598e-02
## BinePerPLantCa        6.758848e-08 3.980216e-04 2.666018e-04 4.389061e-01
## BinePerPlantCo        1.586439e-03 9.635781e-03 6.946697e-04 8.863992e-01
## BinePerPlantCu        1.003645e-02 3.580480e-02 3.495161e-06 1.422006e-03
## BinePerPlantFe        2.701892e-01 4.564969e-01 1.808324e-02 7.073897e-01
## BinePerPlantK         1.413458e-05 4.329651e-04 2.605324e-09 5.612154e-02
## BinePerPlantMg        3.208027e-01 8.420480e-01 7.622118e-01 1.551796e-03
## BinePerPlantMn        3.346335e-01 6.607409e-01 4.010136e-01 2.098278e-08
## BinePerPlantMo        3.758711e-02 6.771054e-01 7.371148e-03 9.657714e-07
## BinePerPlantNi        1.466224e-05 2.444221e-04 3.495208e-06 4.247166e-01
## BinePerPlantP         8.064501e-01 2.831022e-01 2.011931e-01 1.739178e-01
## BinePerPlantSe        4.337926e-06 2.357369e-03 4.211413e-07 9.496733e-04
## BinePerPLantZn        4.021786e-01 1.472563e-01 2.455198e-01 1.726206e-04
## SeedPerPlantAl        1.755172e-07 1.411365e-08 1.748233e-08 5.405082e-02
## SeedPerPlantB         2.817619e-05 5.027531e-05 3.374012e-06 2.303427e-01
## SeedPerPlantCa        6.520235e-05 5.704575e-04 2.094335e-02 9.453146e-01
## SeedPerPlantCo        4.250167e-03 2.073124e-03 1.304244e-02 7.056061e-01
## SeedPerPlantCu        2.447516e-04 1.015256e-04 1.007122e-03 1.176802e-01
## SeedPerPlantFe        1.276789e-04 1.676622e-04 3.660273e-03 6.481900e-01
## SeedPerPlantK         1.717417e-05 3.607064e-07 3.130542e-06 1.619542e-01
## SeedPerPlantMg        1.913136e-05 4.032613e-06 1.180726e-04 1.985975e-01
## SeedPerPlantMn        6.668500e-05 2.765031e-04 1.163290e-02 4.807192e-01
## SeedPerPlantMo        9.691162e-04 4.332027e-05 1.403305e-06 4.348066e-06
## SeedPerPlantNi        7.243049e-02 1.305848e-03 4.402521e-03 3.614094e-01
## SeedPerPlantP         8.599489e-04 9.476083e-04 1.231127e-02 2.048761e-01
## SeedPerPlantS         9.228907e-06 4.671072e-07 1.085007e-05 9.095523e-02
## SeedPerPlantZn        1.784650e-05 4.705155e-04 2.457947e-03 8.017307e-01
## BineSeedPerPlantAl    1.755172e-07 1.411365e-08 1.748233e-08 5.405082e-02
## BineSeedPerPlantB     8.200900e-06 2.522790e-04 2.164138e-05 9.887454e-01
## BineSeedPerPlantCa    6.767589e-03 3.010899e-01 7.590763e-01 2.601096e-02
## BineSeedPerPlantCo    7.397125e-08 3.105090e-04 2.446967e-04 4.424642e-01
## BineSeedPerPlantCu    1.389018e-04 6.986960e-05 5.469646e-04 1.333935e-01
## BineSeedPerPlantFe    9.803945e-05 1.455264e-04 1.937817e-03 5.353223e-01
## BineSeedPerPlantK     7.473450e-01 1.271040e-01 2.357877e-03 5.487253e-01
## BineSeedPerPlantMg    1.334664e-06 3.245829e-05 6.262756e-10 5.073131e-02
## BineSeedPerPlantMo    9.739298e-05 7.557141e-04 2.022435e-02 2.687751e-01
## BineSeedPerPlantNi    8.257397e-02 1.848132e-01 9.126974e-01 4.355757e-06
## BineSeedPerPlantP     8.081206e-03 1.361831e-01 2.671792e-04 4.095319e-07
## BineSeedPerPlantS     3.229262e-04 4.422541e-04 5.024164e-03 1.977904e-01
## BineSeedPerPlantS.1   2.824139e-01 6.278937e-01 1.380938e-02 8.176992e-02
## BineSeedPerPlantZn    1.532696e-05 4.409206e-04 2.134015e-03 8.335079e-01
##                             BineMo       BineNi        BineP        BineS
## BineM                 2.020687e-02 2.401936e-10 6.014190e-17 3.344074e-11
## SeedM                 5.431431e-01 7.252496e-04 6.516313e-11 5.503420e-04
## BineSeedM             1.584792e-01 1.314402e-06 1.674190e-15 5.801529e-07
## SeedN                 4.315838e-01 4.587339e-09 2.763240e-10 3.049420e-06
## SeedMOne              3.421049e-01 2.839071e-01 8.540967e-03 7.443073e-01
## NodPerPlant           9.326035e-02 4.214210e-01 5.109870e-03 5.959311e-01
## NodPerPlant.1         4.352135e-02 2.162981e-02 9.505376e-01 1.881270e-02
## Mic                   4.069648e-03 2.942192e-02 8.144034e-04 3.710757e-04
## Ves                   1.962753e-01 9.667760e-01 5.834493e-01 8.539190e-01
## Arb                   5.310146e-03 4.847155e-03 9.452515e-06 7.519993e-05
## pH                    8.574012e-10 6.868705e-02 8.046401e-01 3.184586e-02
## NitBine               4.694737e-05 4.619443e-17 5.392685e-11 2.525804e-18
## Nit15                 5.788134e-05 4.315117e-03 2.783780e-06 1.354745e-03
## NitPerPlant           4.188662e-01 1.603484e-01 1.292021e-04 1.608979e-01
## Nit15PerPlant         3.996225e-07 1.624331e-01 4.622355e-01 4.794658e-02
## NitSeed               3.496059e-01 2.020687e-04 1.822729e-01 1.880375e-02
## NitSeed15             9.310516e-01 6.395743e-02 6.457015e-11 4.879032e-02
## NitSeedPerPlant       8.384447e-01 2.213365e-02 6.738350e-08 1.281675e-02
## Nit15SeedPerPlant     2.095519e-01 8.914602e-01 3.931020e-02 4.171883e-01
## NitBineSeedPerPlant   9.197347e-01 2.121353e-02 2.888196e-08 1.269622e-02
## Nit15BineSeedPerPlant 3.654368e-03 6.763146e-01 1.499635e-01 9.485883e-01
## BineAl                2.975740e-01 1.993227e-16 8.914961e-08 1.289829e-07
## BineB                 7.095143e-03 1.658796e-21 1.159490e-07 4.880359e-12
## BineCa                2.220306e-06 9.846131e-16 5.546729e-03 1.219427e-11
## BineCo                1.904275e-01 1.673878e-28 3.604469e-15 1.237466e-10
## BineCu                1.448339e-04 2.007164e-10 5.174527e-29 8.626959e-16
## BineFe                7.280205e-01 1.636526e-05 3.317444e-14 5.565151e-03
## BineK                 1.988793e-01 1.103975e-08 1.469481e-16 1.546844e-05
## BineMg                8.103882e-01 3.828713e-20 1.127382e-15 2.548732e-07
## BineMn                1.873193e-03 1.652895e-07 3.681859e-02 3.578320e-01
## BineMo                0.000000e+00 8.120504e-03 1.770769e-02 5.354988e-10
## BineNi                8.120504e-03 0.000000e+00 7.902021e-12 1.470678e-13
## BineP                 1.770769e-02 7.902021e-12 0.000000e+00 4.339136e-11
## BineS                 5.354988e-10 1.470678e-13 4.339136e-11 0.000000e+00
## BineZn                2.294914e-01 1.266922e-08 1.650069e-11 1.151391e-03
## SeedAl                1.002179e-01 8.875944e-01 6.296768e-04 7.857491e-01
## SeedB                 8.457680e-02 4.595635e-01 9.232347e-01 1.780002e-02
## SeedCo                7.424260e-01 7.160985e-04 2.708326e-03 6.471811e-02
## SeedCu                9.169214e-02 1.774773e-05 1.105779e-08 1.658026e-05
## SeedFe                9.656285e-01 1.233853e-03 1.704842e-01 1.365265e-01
## SeedK                 3.734927e-02 6.705802e-01 1.749748e-01 2.607054e-01
## SeedMg                9.557378e-01 1.252768e-03 1.357515e-02 1.502614e-01
## SeedMn                7.241581e-01 6.865784e-05 1.163936e-01 6.380858e-02
## SeedMo                3.062478e-03 9.826545e-01 2.500430e-03 3.031587e-03
## SeedNi                9.587078e-02 1.508802e-01 5.045227e-03 3.535948e-01
## SeedP                 1.364764e-02 5.595933e-08 4.171596e-10 7.544792e-08
## SeedS                 8.659920e-01 3.863495e-02 2.812726e-01 2.215185e-01
## SeedZn                6.785609e-01 4.882964e-03 2.048096e-01 2.427267e-01
## SoilAl                3.122874e-06 1.676987e-01 7.891923e-01 4.245806e-01
## SoilB                 4.673759e-02 2.940376e-01 2.755943e-01 3.099612e-02
## SoilCa                1.933651e-02 1.709358e-03 3.352056e-01 6.349712e-06
## SoilCo                2.266066e-02 3.605540e-02 6.391479e-01 1.664980e-02
## SoilCu                1.264293e-03 1.938231e-05 1.129044e-01 1.185139e-07
## SoilFe                2.434542e-04 7.021294e-01 8.776888e-01 7.676701e-02
## SoilK                 4.349808e-01 3.895050e-01 6.049629e-06 2.605017e-01
## SoilMg                5.182517e-01 3.454414e-01 4.012625e-06 2.262090e-01
## SoilMn                5.776892e-04 8.835371e-01 8.941605e-01 1.096244e-02
## SoilMo                5.084075e-01 1.325188e-03 4.930297e-01 4.422661e-02
## SoilNi                7.929009e-02 7.685897e-02 5.199870e-01 2.389263e-02
## SoilP                 7.876819e-01 2.206180e-01 3.167127e-02 2.925743e-01
## SoilS                 3.155671e-01 1.893386e-01 9.815474e-01 1.108232e-01
## SoilZn                2.683829e-01 1.469353e-03 2.761823e-05 4.233566e-05
## BinePerPlantAl        3.027543e-02 5.572171e-04 1.755047e-11 1.421906e-06
## BinePerPlantB         2.706902e-01 1.632818e-01 3.216351e-02 8.579881e-01
## BinePerPLantCa        1.941904e-01 2.878091e-01 4.138118e-07 1.431327e-01
## BinePerPlantCo        3.522480e-02 1.171440e-02 1.660356e-06 6.492352e-05
## BinePerPlantCu        6.097324e-01 1.710721e-03 1.023943e-03 1.444302e-02
## BinePerPlantFe        1.182000e-02 6.962675e-03 1.689681e-02 3.862906e-05
## BinePerPlantK         4.244440e-02 1.362720e-07 1.551091e-11 5.067461e-09
## BinePerPlantMg        9.847176e-03 8.147250e-01 2.283735e-02 1.117543e-02
## BinePerPlantMn        1.345809e-05 9.878114e-01 9.630236e-03 1.437553e-03
## BinePerPlantMo        1.171419e-19 9.000185e-01 6.318741e-01 5.947414e-03
## BinePerPlantNi        1.479292e-01 1.378944e-03 9.907523e-10 1.330832e-05
## BinePerPlantP         5.292378e-01 4.994386e-01 9.515273e-01 4.260031e-01
## BinePerPlantSe        2.779367e-02 1.129314e-02 9.041094e-06 3.456969e-01
## BinePerPLantZn        1.348931e-03 9.756335e-01 4.544159e-01 3.627326e-02
## SeedPerPlantAl        1.267545e-01 7.279537e-05 1.513780e-09 4.560130e-05
## SeedPerPlantB         1.156621e-01 7.749076e-04 1.710898e-07 1.824005e-05
## SeedPerPlantCa        5.854808e-01 7.268934e-01 1.808089e-03 3.277028e-01
## SeedPerPlantCo        6.891227e-01 5.568114e-01 8.933232e-03 1.803151e-01
## SeedPerPlantCu        3.125694e-01 4.547411e-01 1.182868e-03 5.307614e-01
## SeedPerPlantFe        7.522639e-01 3.234629e-01 8.430072e-05 8.681171e-02
## SeedPerPlantK         1.374909e-01 3.811185e-03 8.196161e-07 4.384029e-04
## SeedPerPlantMg        6.386047e-01 1.024451e-01 4.095310e-05 3.218308e-02
## SeedPerPlantMn        6.531282e-01 4.894917e-01 8.164096e-05 7.612312e-02
## SeedPerPlantMo        1.810474e-01 1.896631e-02 1.250027e-02 3.773472e-01
## SeedPerPlantNi        1.876744e-01 1.105640e-01 2.204073e-02 5.938696e-03
## SeedPerPlantP         1.092824e-01 9.106808e-01 1.573615e-02 8.245991e-01
## SeedPerPlantS         5.488290e-01 3.344824e-02 9.004761e-06 1.574168e-02
## SeedPerPlantZn        4.930397e-01 1.535788e-01 6.878664e-06 2.128618e-02
## BineSeedPerPlantAl    1.267545e-01 7.279537e-05 1.513780e-09 4.560130e-05
## BineSeedPerPlantB     2.925642e-02 4.258092e-04 7.916192e-12 9.032161e-07
## BineSeedPerPlantCa    2.698725e-01 2.359821e-01 1.033466e-02 9.735297e-01
## BineSeedPerPlantCo    2.211791e-01 2.896010e-01 4.646906e-07 1.357053e-01
## BineSeedPerPlantCu    4.145423e-01 3.611985e-01 4.432417e-04 3.705346e-01
## BineSeedPerPlantFe    7.804948e-01 2.556592e-01 5.366177e-05 7.025539e-02
## BineSeedPerPlantK     8.318227e-03 2.119204e-03 1.898219e-03 4.799233e-06
## BineSeedPerPlantMg    6.279754e-02 9.340717e-07 3.013366e-12 3.033436e-08
## BineSeedPerPlantMo    4.314252e-01 4.934845e-01 4.690240e-05 4.134566e-02
## BineSeedPerPlantNi    2.574741e-05 5.946955e-01 8.657084e-04 3.451162e-04
## BineSeedPerPlantP     4.091438e-13 4.999856e-01 2.111857e-01 1.032443e-01
## BineSeedPerPlantS     1.597229e-01 8.710942e-01 4.842256e-03 8.872006e-01
## BineSeedPerPlantS.1   7.135727e-01 2.072960e-01 1.764761e-01 1.452706e-01
## BineSeedPerPlantZn    5.130764e-01 1.473284e-01 5.937701e-06 2.146551e-02
##                             BineZn       SeedAl        SeedB       SeedCo
## BineM                 2.469025e-07 7.557251e-04 1.823334e-01 3.845294e-01
## SeedM                 6.414849e-09 3.538670e-07 5.237074e-01 4.766561e-01
## BineSeedM             2.679559e-09 4.095890e-06 3.223223e-01 9.731401e-01
## SeedN                 2.672649e-06 6.296745e-04 5.994818e-01 1.076529e-01
## SeedMOne              4.986753e-03 3.422364e-06 9.247857e-01 2.168663e-02
## NodPerPlant           4.109512e-03 1.227905e-03 2.252335e-02 3.311650e-03
## NodPerPlant.1         9.045765e-01 3.441796e-01 3.699654e-02 4.238586e-02
## Mic                   5.019419e-01 6.731865e-02 4.979110e-01 3.970468e-03
## Ves                   1.852883e-01 5.270922e-01 1.345914e-01 1.331342e-02
## Arb                   1.128449e-01 5.564541e-03 4.591043e-01 4.589101e-03
## pH                    2.572334e-05 2.510942e-01 7.053316e-02 5.704089e-01
## NitBine               6.640333e-05 3.727084e-01 8.959012e-02 2.247277e-01
## Nit15                 5.610550e-03 1.047446e-02 9.113147e-01 2.469668e-01
## NitPerPlant           1.180256e-02 7.201373e-05 7.947405e-01 6.003671e-01
## Nit15PerPlant         8.991761e-01 2.047705e-01 9.460142e-01 1.292138e-01
## NitSeed               5.547664e-01 5.705057e-02 4.427388e-01 4.571770e-01
## NitSeed15             4.627705e-07 6.204064e-09 3.109441e-01 2.752629e-01
## NitSeedPerPlant       1.472944e-07 1.566388e-07 7.106241e-01 3.977744e-01
## Nit15SeedPerPlant     1.311339e-01 6.459254e-05 4.490306e-02 2.511978e-03
## NitBineSeedPerPlant   1.730757e-07 5.953462e-08 7.063128e-01 4.635172e-01
## Nit15BineSeedPerPlant 2.219694e-01 1.063343e-04 8.693379e-02 5.655439e-02
## BineAl                2.137187e-08 1.570490e-01 3.856580e-01 4.147020e-01
## BineB                 1.120864e-05 7.444854e-01 4.623281e-01 2.044802e-02
## BineCa                1.863685e-01 4.437457e-03 1.257888e-01 1.963948e-02
## BineCo                2.165918e-17 2.354566e-01 7.860842e-01 1.496326e-04
## BineCu                3.302256e-08 5.704547e-03 7.555978e-01 1.969454e-02
## BineFe                5.604910e-13 2.120746e-03 2.533231e-01 1.262393e-02
## BineK                 6.204270e-13 7.893762e-04 1.102836e-01 2.454902e-02
## BineMg                2.008178e-18 1.897799e-02 8.692937e-01 1.303804e-02
## BineMn                6.576800e-10 6.601528e-01 4.113119e-01 7.087584e-02
## BineMo                2.294914e-01 1.002179e-01 8.457680e-02 7.424260e-01
## BineNi                1.266922e-08 8.875944e-01 4.595635e-01 7.160985e-04
## BineP                 1.650069e-11 6.296768e-04 9.232347e-01 2.708326e-03
## BineS                 1.151391e-03 7.857491e-01 1.780002e-02 6.471811e-02
## BineZn                0.000000e+00 1.196555e-03 4.401398e-01 2.107155e-02
## SeedAl                1.196555e-03 0.000000e+00 2.973163e-01 5.075154e-01
## SeedB                 4.401398e-01 2.973163e-01 0.000000e+00 5.850935e-04
## SeedCo                2.107155e-02 5.075154e-01 5.850935e-04 0.000000e+00
## SeedCu                3.785619e-03 7.008491e-02 3.823959e-01 7.666620e-06
## SeedFe                2.829927e-01 1.794641e-01 4.503673e-02 1.045878e-04
## SeedK                 2.387935e-01 2.443810e-01 7.503411e-07 1.304024e-13
## SeedMg                3.713485e-01 8.773267e-01 3.162322e-03 1.358028e-15
## SeedMn                4.592302e-03 4.739187e-01 1.239890e-03 1.085897e-10
## SeedMo                9.965762e-01 4.283819e-02 7.204520e-01 9.323213e-03
## SeedNi                8.475638e-02 5.017843e-03 1.519547e-03 1.716695e-03
## SeedP                 2.167945e-03 1.089059e-01 4.525677e-01 2.547375e-06
## SeedS                 9.665347e-01 3.272147e-01 2.137096e-03 9.845082e-13
## SeedZn                1.121476e-02 9.119397e-01 2.507491e-03 7.475767e-05
## SoilAl                8.205902e-05 4.666057e-02 6.563593e-01 8.719131e-01
## SoilB                 1.434984e-01 6.863746e-01 5.821082e-01 4.302877e-01
## SoilCa                3.143157e-01 2.551913e-01 2.930588e-04 3.962271e-01
## SoilCo                6.368277e-02 1.599300e-03 2.544292e-01 2.874348e-01
## SoilCu                2.705926e-01 3.846477e-01 2.099127e-02 7.005095e-01
## SoilFe                2.067777e-02 4.498072e-04 4.354141e-01 4.478020e-02
## SoilK                 2.947581e-05 9.466857e-08 6.738305e-01 6.465188e-01
## SoilMg                2.439854e-05 9.752223e-08 5.885610e-01 6.082782e-01
## SoilMn                3.470286e-02 1.932986e-01 1.051106e-02 1.777067e-01
## SoilMo                6.700172e-05 6.532343e-01 2.224454e-01 8.972827e-01
## SoilNi                1.905646e-01 5.609533e-03 1.588414e-01 4.475892e-01
## SoilP                 1.231763e-01 7.736261e-02 5.464502e-02 1.761479e-01
## SoilS                 9.429199e-01 4.911842e-01 7.594701e-02 7.991013e-01
## SoilZn                3.060757e-03 5.292695e-01 1.368866e-01 4.947375e-03
## BinePerPlantAl        3.561799e-03 1.842997e-04 2.414988e-01 4.034722e-01
## BinePerPlantB         7.130810e-01 3.472888e-06 3.843861e-01 2.860733e-01
## BinePerPLantCa        3.594074e-05 4.084685e-10 8.257815e-01 5.746169e-01
## BinePerPlantCo        1.121586e-01 5.173905e-04 1.296566e-01 3.094091e-01
## BinePerPlantCu        5.042047e-03 3.014672e-03 1.446127e-01 6.898488e-01
## BinePerPlantFe        9.239162e-01 8.713959e-02 2.540483e-02 5.432274e-01
## BinePerPlantK         1.413809e-04 1.853203e-03 5.601398e-02 5.481606e-01
## BinePerPlantMg        1.927698e-01 4.755521e-02 7.001082e-02 3.224006e-01
## BinePerPlantMn        5.314902e-02 1.991423e-01 8.111234e-02 3.162733e-01
## BinePerPlantMo        2.812171e-04 1.814552e-03 3.077050e-01 4.313901e-01
## BinePerPlantNi        9.514172e-04 8.967233e-06 2.047872e-01 7.590989e-01
## BinePerPlantP         7.952981e-01 1.033247e-01 4.490074e-02 2.117519e-02
## BinePerPlantSe        2.123926e-05 9.617489e-07 7.393246e-01 8.914745e-01
## BinePerPLantZn        1.526182e-04 8.675106e-01 4.214871e-02 2.337580e-01
## SeedPerPlantAl        2.887799e-06 3.498671e-02 1.111367e-01 2.805453e-01
## SeedPerPlantB         1.155939e-04 1.932169e-03 2.683283e-06 5.200071e-02
## SeedPerPlantCa        1.204511e-03 3.203436e-04 4.619590e-02 3.476661e-04
## SeedPerPlantCo        9.178538e-03 9.347222e-04 2.160444e-02 9.388710e-08
## SeedPerPlantCu        3.154685e-05 2.868699e-06 2.900512e-01 1.013837e-03
## SeedPerPlantFe        1.936121e-04 1.964780e-05 8.126866e-02 9.816012e-03
## SeedPerPlantK         1.969321e-05 6.805752e-04 2.187539e-02 5.359048e-03
## SeedPerPlantMg        1.165035e-05 5.831309e-05 1.492480e-01 1.981245e-03
## SeedPerPlantMn        8.874361e-03 9.293823e-05 1.463486e-02 2.949316e-04
## SeedPerPlantMo        3.913335e-06 1.154636e-02 4.957528e-01 4.096198e-02
## SeedPerPlantNi        6.408065e-03 1.615138e-01 1.456365e-02 3.576442e-03
## SeedPerPlantP         3.076241e-04 8.846490e-06 3.464991e-01 3.128096e-04
## SeedPerPlantS         5.160986e-06 7.927828e-05 1.133696e-01 1.040261e-02
## SeedPerPlantZn        2.025749e-03 8.023548e-05 1.334987e-02 5.191764e-03
## BineSeedPerPlantAl    2.887799e-06 3.498671e-02 1.111367e-01 2.805453e-01
## BineSeedPerPlantB     2.486871e-03 1.508562e-04 1.733695e-01 4.792033e-01
## BineSeedPerPlantCa    3.401204e-01 5.708819e-07 2.376608e-01 9.811563e-02
## BineSeedPerPlantCo    3.397826e-05 4.415820e-10 7.261591e-01 4.041787e-01
## BineSeedPerPlantCu    3.266904e-05 1.352514e-06 2.542755e-01 1.123874e-03
## BineSeedPerPlantFe    1.400825e-04 1.354970e-05 7.431827e-02 1.111564e-02
## BineSeedPerPlantK     4.264792e-01 2.734477e-02 1.174487e-02 2.919232e-01
## BineSeedPerPlantMg    1.251578e-05 2.588516e-04 4.640615e-02 8.659314e-01
## BineSeedPerPlantMo    2.405973e-02 6.569529e-05 1.015246e-02 3.817302e-04
## BineSeedPerPlantNi    2.959387e-01 5.535958e-02 4.694457e-02 1.310951e-01
## BineSeedPerPlantP     4.357324e-06 4.223850e-04 8.923779e-01 8.138484e-01
## BineSeedPerPlantS     1.586721e-04 2.587543e-06 3.097854e-01 5.101045e-04
## BineSeedPerPlantS.1   2.746678e-01 7.658130e-03 2.224796e-02 4.038238e-03
## BineSeedPerPlantZn    1.807894e-03 6.838698e-05 1.417213e-02 5.544330e-03
##                             SeedCu       SeedFe        SeedK       SeedMg
## BineM                 3.604773e-08 1.360472e-01 9.574089e-01 2.005184e-01
## SeedM                 4.015702e-04 9.153281e-01 3.682458e-01 3.185522e-01
## BineSeedM             3.651736e-06 4.608725e-01 6.054327e-01 9.838024e-01
## SeedN                 2.475381e-05 2.016334e-01 2.441536e-01 2.777923e-03
## SeedMOne              3.350110e-01 1.153571e-01 2.174261e-01 6.564451e-04
## NodPerPlant           5.047546e-01 3.225606e-01 2.046552e-03 1.660233e-01
## NodPerPlant.1         2.571847e-01 5.074352e-02 1.094011e-02 1.827329e-01
## Mic                   6.509002e-04 3.631630e-01 1.166672e-02 5.222887e-04
## Ves                   4.484853e-01 2.977550e-01 4.101899e-02 4.478929e-03
## Arb                   2.388347e-05 2.564148e-01 1.231623e-02 1.019972e-03
## pH                    8.264537e-01 5.647629e-02 8.772414e-02 2.712490e-01
## NitBine               3.216368e-05 3.819009e-02 2.997323e-01 1.166965e-01
## Nit15                 1.094029e-01 6.064964e-01 6.816193e-02 2.187029e-01
## NitPerPlant           3.546417e-04 6.821187e-01 7.454489e-02 2.221970e-01
## Nit15PerPlant         1.880241e-01 4.564312e-01 7.853029e-04 2.471794e-02
## NitSeed               5.391487e-02 3.657904e-02 8.938128e-01 1.808628e-02
## NitSeed15             4.925017e-03 9.020128e-01 2.458021e-01 8.933648e-01
## NitSeedPerPlant       5.303414e-03 7.656567e-01 4.079821e-01 1.490172e-01
## Nit15SeedPerPlant     9.305443e-02 5.072709e-02 6.733156e-02 1.372652e-01
## NitBineSeedPerPlant   2.516937e-03 8.154286e-01 5.639636e-01 2.255063e-01
## Nit15BineSeedPerPlant 5.314445e-02 1.777047e-01 7.701189e-01 6.903290e-01
## BineAl                2.427549e-04 2.568656e-02 5.940232e-01 6.962811e-02
## BineB                 2.769234e-05 4.094238e-04 9.406011e-01 3.897837e-03
## BineCa                1.327073e-02 2.297375e-03 4.299821e-01 4.768292e-03
## BineCo                4.787936e-05 1.217848e-02 3.139584e-01 5.889909e-03
## BineCu                9.020080e-08 2.837963e-01 6.494538e-01 5.940809e-02
## BineFe                2.944029e-05 3.325848e-01 6.541518e-02 1.063579e-01
## BineK                 7.753565e-05 1.161681e-01 3.683973e-01 1.492458e-01
## BineMg                1.542280e-05 7.101444e-03 3.589925e-01 1.394114e-02
## BineMn                2.519861e-01 8.669122e-03 2.697606e-01 6.121310e-02
## BineMo                9.169214e-02 9.656285e-01 3.734927e-02 9.557378e-01
## BineNi                1.774773e-05 1.233853e-03 6.705802e-01 1.252768e-03
## BineP                 1.105779e-08 1.704842e-01 1.749748e-01 1.357515e-02
## BineS                 1.658026e-05 1.365265e-01 2.607054e-01 1.502614e-01
## BineZn                3.785619e-03 2.829927e-01 2.387935e-01 3.713485e-01
## SeedAl                7.008491e-02 1.794641e-01 2.443810e-01 8.773267e-01
## SeedB                 3.823959e-01 4.503673e-02 7.503411e-07 3.162322e-03
## SeedCo                7.666620e-06 1.045878e-04 1.304024e-13 1.358028e-15
## SeedCu                0.000000e+00 3.083275e-04 3.718298e-06 4.462477e-08
## SeedFe                3.083275e-04 0.000000e+00 2.140965e-03 5.916353e-04
## SeedK                 3.718298e-06 2.140965e-03 0.000000e+00 6.925859e-14
## SeedMg                4.462477e-08 5.916353e-04 6.925859e-14 0.000000e+00
## SeedMn                5.246170e-04 9.718006e-07 1.588857e-07 1.740175e-07
## SeedMo                2.064359e-03 3.062971e-01 2.254242e-02 6.108609e-02
## SeedNi                2.524888e-03 2.182800e-02 8.973577e-07 2.785867e-06
## SeedP                 7.748425e-34 1.328923e-03 1.411344e-05 2.924250e-09
## SeedS                 3.374937e-06 1.631829e-03 9.747168e-15 2.004778e-18
## SeedZn                3.302509e-04 3.215544e-08 1.423051e-05 4.996337e-05
## SoilAl                8.387520e-01 4.652555e-01 4.072561e-01 8.864343e-01
## SoilB                 1.292661e-01 5.313499e-01 8.875988e-01 1.550012e-01
## SoilCa                2.572734e-01 1.935996e-01 2.883010e-01 5.987513e-01
## SoilCo                1.665715e-01 1.914146e-03 8.411138e-01 2.090704e-01
## SoilCu                7.084969e-02 2.328456e-01 1.887677e-02 9.862921e-01
## SoilFe                9.678041e-01 6.007674e-01 9.017710e-01 2.791170e-01
## SoilK                 1.475087e-02 4.084935e-01 9.173815e-01 3.308164e-01
## SoilMg                1.538963e-02 3.634259e-01 9.796621e-01 3.108238e-01
## SoilMn                6.411341e-01 8.283317e-01 4.507991e-02 1.137530e-01
## SoilMo                7.738634e-01 4.161481e-01 5.847068e-01 6.976795e-01
## SoilNi                2.248032e-01 5.318762e-03 6.925201e-01 4.756502e-01
## SoilP                 8.181992e-01 5.720697e-02 1.654236e-01 8.389650e-01
## SoilS                 8.434311e-01 3.538943e-01 4.009641e-01 5.500346e-01
## SoilZn                1.657678e-04 8.142357e-02 1.430242e-01 4.170150e-02
## BinePerPlantAl        3.542436e-07 3.533539e-01 4.460501e-01 2.402928e-01
## BinePerPlantB         1.027167e-01 8.013289e-02 4.244742e-01 4.467526e-01
## BinePerPLantCa        3.530175e-04 7.387156e-01 3.701922e-01 6.877820e-01
## BinePerPlantCo        1.142509e-05 5.755628e-01 6.574988e-01 7.750907e-01
## BinePerPlantCu        1.931387e-03 2.966745e-01 8.230345e-01 4.713371e-01
## BinePerPlantFe        1.037079e-02 4.277131e-01 4.208742e-01 3.205610e-01
## BinePerPlantK         1.998262e-07 1.968090e-01 8.908648e-01 1.605210e-01
## BinePerPlantMg        4.237753e-03 6.769362e-01 7.389962e-01 8.786020e-01
## BinePerPlantMn        1.031793e-02 5.120937e-01 2.765717e-01 7.216836e-01
## BinePerPlantMo        6.587809e-01 5.954003e-01 6.281023e-03 1.875886e-01
## BinePerPlantNi        2.015783e-06 5.769711e-01 9.421128e-01 6.463217e-01
## BinePerPlantP         1.914766e-01 6.443906e-01 3.634762e-01 7.003068e-01
## BinePerPlantSe        2.619016e-04 3.037540e-01 9.045076e-02 2.069541e-01
## BinePerPLantZn        3.967638e-02 7.379754e-01 4.289889e-01 4.457655e-01
## SeedPerPlantAl        9.368836e-04 9.344087e-01 4.951417e-02 2.367152e-01
## SeedPerPlantB         2.011903e-02 2.884641e-01 1.407920e-03 4.984999e-02
## SeedPerPlantCa        6.866156e-01 2.550901e-02 9.897997e-04 2.574215e-05
## SeedPerPlantCo        7.223744e-01 1.675162e-02 8.850835e-07 1.240970e-07
## SeedPerPlantCu        3.164207e-01 2.003533e-02 1.029267e-03 5.090230e-05
## SeedPerPlantFe        4.828786e-01 2.823315e-06 1.243187e-02 8.354641e-03
## SeedPerPlantK         2.072440e-01 2.704253e-01 5.464101e-05 1.435585e-03
## SeedPerPlantMg        4.126035e-01 2.234330e-01 9.841378e-04 2.424893e-05
## SeedPerPlantMn        4.453252e-01 9.005887e-03 1.935729e-04 3.352477e-04
## SeedPerPlantMo        7.015590e-01 6.919617e-01 2.725566e-02 1.703632e-02
## SeedPerPlantNi        7.921751e-01 5.591989e-02 8.788748e-05 2.482623e-04
## SeedPerPlantP         1.680011e-01 2.324360e-02 9.725764e-04 5.641655e-06
## SeedPerPlantS         2.848105e-01 3.233062e-01 1.421728e-03 9.791274e-04
## SeedPerPlantZn        2.692109e-01 6.976407e-03 1.200640e-03 3.553318e-03
## BineSeedPerPlantAl    9.368836e-04 9.344087e-01 4.951417e-02 2.367152e-01
## BineSeedPerPlantB     4.387563e-07 3.997120e-01 5.642842e-01 3.013789e-01
## BineSeedPerPlantCa    1.205751e-01 4.228843e-02 9.278507e-01 1.391120e-01
## BineSeedPerPlantCo    6.800191e-04 6.419550e-01 5.577283e-01 4.977980e-01
## BineSeedPerPlantCu    5.126705e-01 2.780388e-02 1.358169e-03 1.077986e-04
## BineSeedPerPlantFe    3.923791e-01 7.969853e-06 1.550425e-02 1.162590e-02
## BineSeedPerPlantK     8.301100e-03 5.835007e-01 1.509161e-01 6.996447e-01
## BineSeedPerPlantMg    4.221584e-06 4.059337e-01 5.413632e-01 7.665758e-01
## BineSeedPerPlantMo    2.621327e-01 1.184635e-02 3.973010e-04 8.674437e-04
## BineSeedPerPlantNi    5.353223e-03 5.509882e-01 1.015957e-01 3.685494e-01
## BineSeedPerPlantP     6.069816e-01 8.784031e-01 2.117622e-01 9.715097e-01
## BineSeedPerPlantS     3.498222e-01 3.379526e-02 1.651471e-03 1.931263e-05
## BineSeedPerPlantS.1   1.347683e-01 9.218634e-01 7.400215e-02 1.797740e-01
## BineSeedPerPlantZn    2.537736e-01 7.691099e-03 1.413211e-03 4.007522e-03
##                             SeedMn       SeedMo       SeedNi        SeedP
## BineM                 1.599300e-01 7.074834e-02 1.285328e-01 3.408959e-09
## SeedM                 7.724757e-01 5.913396e-01 4.040683e-01 2.004082e-03
## BineSeedM             6.454524e-01 2.542721e-01 2.328431e-01 7.499343e-06
## SeedN                 1.704528e-02 1.500116e-01 6.410339e-03 1.362153e-07
## SeedMOne              2.355726e-03 7.220257e-01 9.722718e-01 8.551305e-01
## NodPerPlant           9.712960e-01 3.464678e-03 2.184643e-02 5.880300e-01
## NodPerPlant.1         3.420003e-01 2.086528e-02 9.486479e-02 3.295960e-01
## Mic                   2.314176e-02 5.186742e-03 1.507674e-02 7.208981e-05
## Ves                   3.902201e-02 9.514135e-01 4.390595e-02 3.047984e-01
## Arb                   1.597108e-02 9.143467e-03 1.831156e-02 2.136000e-06
## pH                    2.071711e-02 8.573485e-08 5.907107e-02 9.993502e-01
## NitBine               3.929697e-02 1.672337e-01 8.619852e-01 1.355455e-07
## Nit15                 7.363059e-01 2.882744e-01 2.670120e-01 7.543415e-02
## NitPerPlant           7.797488e-01 6.023673e-02 3.519667e-04 1.157500e-03
## Nit15PerPlant         7.175511e-01 7.718181e-01 2.609902e-02 3.605527e-01
## NitSeed               1.432733e-01 2.683105e-01 6.330737e-01 4.811336e-03
## NitSeed15             7.896778e-01 6.428613e-03 1.938690e-02 1.390358e-02
## NitSeedPerPlant       6.271585e-01 6.445901e-01 4.496372e-01 3.004457e-02
## Nit15SeedPerPlant     1.641795e-03 8.159635e-01 8.244606e-01 2.951001e-01
## NitBineSeedPerPlant   6.717629e-01 5.220231e-01 2.750679e-01 1.646230e-02
## Nit15BineSeedPerPlant 1.337151e-02 7.580951e-01 3.034588e-01 2.157067e-01
## BineAl                2.979724e-03 1.690759e-01 2.116171e-01 1.315779e-05
## BineB                 4.047979e-05 8.176500e-01 5.337222e-01 3.087882e-07
## BineCa                2.490340e-04 7.169307e-01 5.559838e-01 1.502895e-04
## BineCo                7.182917e-05 5.117554e-01 7.993433e-02 6.531620e-07
## BineCu                1.714874e-01 8.008215e-05 8.446767e-02 1.167193e-09
## BineFe                2.348716e-01 3.891383e-01 3.602992e-04 1.187150e-04
## BineK                 9.710999e-02 4.360620e-01 2.821418e-02 5.190440e-05
## BineMg                2.119394e-03 6.132383e-01 3.239368e-02 1.054618e-06
## BineMn                9.651609e-06 2.050920e-05 9.164092e-02 1.459449e-01
## BineMo                7.241581e-01 3.062478e-03 9.587078e-02 1.364764e-02
## BineNi                6.865784e-05 9.826545e-01 1.508802e-01 5.595933e-08
## BineP                 1.163936e-01 2.500430e-03 5.045227e-03 4.171596e-10
## BineS                 6.380858e-02 3.031587e-03 3.535948e-01 7.544792e-08
## BineZn                4.592302e-03 9.965762e-01 8.475638e-02 2.167945e-03
## SeedAl                4.739187e-01 4.283819e-02 5.017843e-03 1.089059e-01
## SeedB                 1.239890e-03 7.204520e-01 1.519547e-03 4.525677e-01
## SeedCo                1.085897e-10 9.323213e-03 1.716695e-03 2.547375e-06
## SeedCu                5.246170e-04 2.064359e-03 2.524888e-03 7.748425e-34
## SeedFe                9.718006e-07 3.062971e-01 2.182800e-02 1.328923e-03
## SeedK                 1.588857e-07 2.254242e-02 8.973577e-07 1.411344e-05
## SeedMg                1.740175e-07 6.108609e-02 2.785867e-06 2.924250e-09
## SeedMn                0.000000e+00 8.951030e-01 2.462204e-02 4.858376e-05
## SeedMo                8.951030e-01 0.000000e+00 6.284454e-01 6.232716e-04
## SeedNi                2.462204e-02 6.284454e-01 0.000000e+00 1.957151e-03
## SeedP                 4.858376e-05 6.232716e-04 1.957151e-03 0.000000e+00
## SeedS                 1.878802e-08 2.146114e-03 2.696338e-03 8.567331e-08
## SeedZn                1.638373e-11 4.142429e-01 1.544672e-02 5.217735e-04
## SoilAl                2.562236e-02 2.241786e-03 3.521252e-01 8.047031e-01
## SoilB                 9.990930e-01 1.211743e-02 8.184388e-01 5.319314e-02
## SoilCa                8.989194e-02 6.154718e-02 1.877369e-02 7.741907e-02
## SoilCo                4.673772e-02 9.123974e-01 2.814914e-01 1.262670e-01
## SoilCu                1.732474e-01 6.306276e-01 4.520422e-02 1.447192e-02
## SoilFe                7.230193e-01 1.544619e-02 1.191880e-01 7.319418e-01
## SoilK                 2.534136e-01 1.791125e-01 8.929161e-02 7.631286e-02
## SoilMg                2.279475e-01 1.825083e-01 9.528276e-02 7.610202e-02
## SoilMn                2.839990e-01 8.659852e-03 6.214995e-02 5.246064e-01
## SoilMo                2.736174e-04 8.732085e-02 5.299174e-01 3.718991e-01
## SoilNi                7.667289e-02 8.409429e-01 1.324632e-01 2.879944e-01
## SoilP                 2.178912e-01 4.825160e-02 3.648291e-02 7.555102e-01
## SoilS                 1.457736e-01 3.904859e-01 4.276881e-01 7.380085e-01
## SoilZn                6.087539e-02 2.680606e-03 2.898797e-01 1.358572e-04
## BinePerPlantAl        9.186650e-01 9.853845e-05 2.064662e-02 1.685595e-07
## BinePerPlantB         5.863761e-03 9.305876e-04 1.453944e-02 1.992598e-01
## BinePerPLantCa        4.025668e-01 2.992681e-02 1.253454e-02 3.295186e-03
## BinePerPlantCo        5.162671e-01 2.595201e-02 1.585676e-01 1.690423e-05
## BinePerPlantCu        2.820239e-01 6.150092e-01 1.879338e-01 1.562833e-03
## BinePerPlantFe        5.549710e-01 5.635150e-02 9.209701e-01 1.042808e-03
## BinePerPlantK         2.597131e-01 3.254191e-02 9.014905e-02 1.592404e-08
## BinePerPlantMg        1.168920e-01 3.779098e-05 1.319976e-01 4.162113e-03
## BinePerPlantMn        3.887339e-03 1.608911e-07 6.794396e-01 1.195794e-02
## BinePerPlantMo        2.576566e-01 8.027052e-02 1.728282e-02 8.615642e-01
## BinePerPlantNi        9.724591e-01 1.215473e-02 8.164806e-02 2.531284e-06
## BinePerPlantP         9.884338e-01 4.915169e-01 8.149028e-01 1.754148e-01
## BinePerPlantSe        3.831271e-01 7.593407e-01 1.472818e-04 4.854456e-04
## BinePerPLantZn        5.895266e-02 6.514953e-03 3.438465e-01 2.862759e-02
## SeedPerPlantAl        3.901326e-01 8.819279e-01 9.816069e-01 3.192716e-03
## SeedPerPlantB         4.233107e-02 8.388721e-01 4.166724e-01 3.567489e-02
## SeedPerPlantCa        8.968893e-05 9.283795e-01 3.212742e-01 7.814507e-01
## SeedPerPlantCo        5.368768e-05 2.366003e-01 9.472603e-02 4.392068e-01
## SeedPerPlantCu        5.970978e-03 3.631615e-01 7.877004e-01 2.113912e-01
## SeedPerPlantFe        2.838557e-03 4.661118e-01 4.928002e-01 5.622736e-01
## SeedPerPlantK         2.634276e-02 6.381415e-01 3.153581e-01 3.106554e-01
## SeedPerPlantMg        2.744282e-02 5.558931e-01 3.370788e-01 7.232269e-01
## SeedPerPlantMn        3.081112e-07 6.010565e-01 5.627228e-01 8.102334e-01
## SeedPerPlantMo        9.033381e-01 7.662395e-06 5.398362e-01 9.080006e-01
## SeedPerPlantNi        4.754488e-02 3.354607e-01 3.528381e-06 9.975554e-01
## SeedPerPlantP         1.492612e-03 1.949696e-01 6.434135e-01 4.685961e-02
## SeedPerPlantS         6.168919e-02 3.914093e-01 5.107768e-01 5.462469e-01
## SeedPerPlantZn        1.714987e-04 3.278894e-01 7.704782e-01 3.794618e-01
## BineSeedPerPlantAl    3.901326e-01 8.819279e-01 9.816069e-01 3.192716e-03
## BineSeedPerPlantB     9.956312e-01 1.670464e-04 2.844156e-02 2.347078e-07
## BineSeedPerPlantCa    1.010156e-03 3.277302e-03 4.704537e-02 2.710705e-01
## BineSeedPerPlantCo    2.983087e-01 4.450679e-02 2.212169e-02 5.657790e-03
## BineSeedPerPlantCu    6.770715e-03 4.775007e-01 8.784456e-01 3.693847e-01
## BineSeedPerPlantFe    4.556628e-03 4.953864e-01 5.526572e-01 4.599402e-01
## BineSeedPerPlantK     8.676702e-01 8.891841e-02 7.864143e-01 1.097206e-03
## BineSeedPerPlantMg    6.381869e-01 8.945877e-02 2.169029e-01 1.490735e-06
## BineSeedPerPlantMo    4.241284e-07 2.936145e-01 7.417832e-01 5.312051e-01
## BineSeedPerPlantNi    2.204945e-03 1.827864e-05 7.684955e-01 9.125828e-03
## BineSeedPerPlantP     6.945105e-01 4.335989e-02 4.622198e-01 8.685462e-01
## BineSeedPerPlantS     2.354950e-03 3.055197e-01 7.697907e-01 1.303859e-01
## BineSeedPerPlantS.1   5.704375e-01 3.795642e-01 9.997613e-01 1.646707e-01
## BineSeedPerPlantZn    2.014920e-04 3.291574e-01 8.061584e-01 3.603128e-01
##                              SeedS       SeedZn       SoilAl       SoilB
## BineM                 8.787509e-01 3.008533e-01 1.435347e-01 0.670543319
## SeedM                 8.492019e-03 7.459879e-01 1.197649e-01 0.309317221
## BineSeedM             1.376650e-01 5.061749e-01 1.085712e-01 0.676765570
## SeedN                 7.156944e-02 7.151021e-02 1.353056e-02 0.394565581
## SeedMOne              3.785236e-06 1.176629e-01 8.626964e-01 0.056706971
## NodPerPlant           4.586943e-01 7.181031e-01 5.689698e-01 0.598785129
## NodPerPlant.1         1.419387e-01 4.293749e-01 8.231362e-02 0.399209296
## Mic                   1.742156e-03 6.490672e-03 4.792080e-01 0.281783298
## Ves                   9.978160e-03 1.121870e-02 2.063014e-01 0.682264909
## Arb                   7.042103e-03 1.325155e-02 8.030134e-01 0.368744408
## pH                    9.350007e-01 5.538337e-03 1.461978e-09 0.025644595
## NitBine               3.379911e-01 1.364500e-01 8.161267e-01 0.043941785
## Nit15                 4.698752e-03 9.241256e-01 1.997516e-01 0.602802081
## NitPerPlant           7.696553e-01 7.456309e-01 4.425149e-02 0.371600340
## Nit15PerPlant         7.233489e-03 8.096439e-01 2.159575e-03 0.825677856
## NitSeed               8.274410e-03 5.456791e-01 4.487984e-01 0.181854351
## NitSeed15             1.220681e-01 8.927162e-01 6.361652e-01 0.333673540
## NitSeedPerPlant       1.504094e-03 7.288986e-01 1.492066e-01 0.138433241
## Nit15SeedPerPlant     2.891921e-02 1.678510e-01 2.476646e-01 0.593758611
## NitBineSeedPerPlant   3.487351e-03 7.180110e-01 1.146415e-01 0.136439543
## Nit15BineSeedPerPlant 4.187950e-01 2.856947e-01 3.196188e-02 0.714829728
## BineAl                7.604491e-01 7.447502e-03 1.079252e-03 0.774628028
## BineB                 9.587861e-02 7.828563e-04 1.375716e-01 0.345011229
## BineCa                1.187089e-02 2.913434e-02 8.500552e-01 0.034256597
## BineCo                7.239315e-02 4.502616e-03 1.891239e-02 0.761143632
## BineCu                2.830739e-01 2.450244e-01 6.259340e-01 0.136481814
## BineFe                8.855786e-01 3.589910e-01 1.499625e-01 0.344748201
## BineK                 9.177102e-01 1.483037e-02 4.321060e-01 0.404326306
## BineMg                4.412070e-01 3.714085e-03 2.666624e-03 0.856483442
## BineMn                4.729525e-01 5.234028e-05 7.944170e-10 0.126279308
## BineMo                8.659920e-01 6.785609e-01 3.122874e-06 0.046737589
## BineNi                3.863495e-02 4.882964e-03 1.676987e-01 0.294037644
## BineP                 2.812726e-01 2.048096e-01 7.891923e-01 0.275594272
## BineS                 2.215185e-01 2.427267e-01 4.245806e-01 0.030996118
## BineZn                9.665347e-01 1.121476e-02 8.205902e-05 0.143498352
## SeedAl                3.272147e-01 9.119397e-01 4.666057e-02 0.686374622
## SeedB                 2.137096e-03 2.507491e-03 6.563593e-01 0.582108234
## SeedCo                9.845082e-13 7.475767e-05 8.719131e-01 0.430287743
## SeedCu                3.374937e-06 3.302509e-04 8.387520e-01 0.129266084
## SeedFe                1.631829e-03 3.215544e-08 4.652555e-01 0.531349902
## SeedK                 9.747168e-15 1.423051e-05 4.072561e-01 0.887598833
## SeedMg                2.004778e-18 4.996337e-05 8.864343e-01 0.155001208
## SeedMn                1.878802e-08 1.638373e-11 2.562236e-02 0.999092959
## SeedMo                2.146114e-03 4.142429e-01 2.241786e-03 0.012117434
## SeedNi                2.696338e-03 1.544672e-02 3.521252e-01 0.818438843
## SeedP                 8.567331e-08 5.217735e-04 8.047031e-01 0.053193139
## SeedS                 0.000000e+00 8.522280e-05 9.345247e-01 0.034569040
## SeedZn                8.522280e-05 0.000000e+00 3.270703e-02 0.856647723
## SoilAl                9.345247e-01 3.270703e-02 0.000000e+00 0.037060033
## SoilB                 3.456904e-02 8.566477e-01 3.706003e-02 0.000000000
## SoilCa                1.591141e-01 4.229227e-01 6.094209e-01 0.678441023
## SoilCo                1.078963e-01 3.760210e-02 9.325897e-01 0.004322346
## SoilCu                7.599643e-01 1.147310e-01 3.148976e-01 0.001224167
## SoilFe                2.948042e-01 2.441053e-01 5.546177e-05 0.833143454
## SoilK                 5.660699e-02 2.685102e-01 2.220753e-01 0.009749024
## SoilMg                5.018067e-02 2.330192e-01 2.440394e-01 0.006958079
## SoilMn                9.041918e-01 3.281903e-01 3.855450e-01 0.022580280
## SoilMo                7.827164e-01 4.050487e-03 2.141999e-08 0.214678354
## SoilNi                3.096928e-01 1.364844e-02 4.441481e-01 0.025975822
## SoilP                 5.763736e-01 1.850406e-02 2.932142e-02 0.035830387
## SoilS                 5.665429e-01 4.018146e-01 4.366935e-02 0.173215271
## SoilZn                5.279974e-02 1.097659e-01 4.564931e-01 0.463109677
## BinePerPlantAl        4.958186e-01 9.844593e-01 9.497619e-01 0.326926129
## BinePerPlantB         5.998220e-01 5.146090e-03 7.121336e-01 0.776199759
## BinePerPLantCa        1.880766e-01 7.091551e-01 3.951675e-02 0.279666058
## BinePerPlantCo        5.666565e-01 6.575901e-01 7.639847e-01 0.413362064
## BinePerPlantCu        7.084909e-01 5.349409e-01 1.194555e-03 0.464902716
## BinePerPlantFe        4.945338e-01 6.663805e-01 6.084138e-01 0.085149739
## BinePerPlantK         6.008762e-01 6.965576e-01 1.294249e-01 0.705824886
## BinePerPlantMg        6.921506e-01 7.353806e-02 1.536861e-01 0.071301677
## BinePerPlantMn        9.454107e-01 7.353937e-03 8.600333e-05 0.009572030
## BinePerPlantMo        4.384726e-01 3.854585e-01 2.068071e-09 0.044223579
## BinePerPlantNi        6.542600e-01 9.933017e-01 2.340990e-01 0.763611566
## BinePerPlantP         5.442269e-01 8.859570e-01 8.843085e-03 0.572436878
## BinePerPlantSe        9.869147e-01 4.445724e-01 4.522679e-04 0.250431143
## BinePerPLantZn        5.023250e-01 6.193932e-02 8.120228e-03 0.008516189
## SeedPerPlantAl        6.453515e-03 7.432806e-01 3.292979e-01 0.692310842
## SeedPerPlantB         1.027631e-04 8.709963e-02 5.120519e-01 0.383257859
## SeedPerPlantCa        6.172342e-08 1.497571e-02 4.643571e-01 0.209761246
## SeedPerPlantCo        1.399013e-12 7.110754e-03 5.040811e-01 0.194287115
## SeedPerPlantCu        5.429793e-10 4.948459e-02 1.228372e-01 0.050078188
## SeedPerPlantFe        2.562355e-05 5.977412e-03 5.550779e-01 0.198600109
## SeedPerPlantK         1.093505e-07 1.270693e-01 4.870793e-01 0.398889623
## SeedPerPlantMg        1.346803e-08 1.839536e-01 1.846449e-01 0.150135333
## SeedPerPlantMn        5.300205e-08 5.532734e-04 8.157513e-01 0.526154689
## SeedPerPlantMo        6.285093e-06 3.814762e-01 1.172623e-03 0.010329974
## SeedPerPlantNi        6.371348e-06 1.589751e-01 5.121059e-01 0.439148421
## SeedPerPlantP         7.551073e-12 4.508280e-02 1.332130e-01 0.024473541
## SeedPerPlantS         1.493077e-08 3.071728e-01 2.614233e-01 0.119636914
## SeedPerPlantZn        5.589743e-06 1.565996e-05 9.314406e-01 0.487419542
## BineSeedPerPlantAl    6.453515e-03 7.432806e-01 3.292979e-01 0.692310842
## BineSeedPerPlantB     6.400730e-01 9.146440e-01 9.241694e-01 0.366812532
## BineSeedPerPlantCa    1.486504e-01 2.431788e-03 6.319136e-01 0.993867684
## BineSeedPerPlantCo    1.024790e-01 6.030710e-01 4.323907e-02 0.262570526
## BineSeedPerPlantCu    2.046747e-09 5.317649e-02 1.297608e-01 0.067647642
## BineSeedPerPlantFe    3.885117e-05 8.352311e-03 4.512661e-01 0.195112964
## BineSeedPerPlantK     8.406852e-01 8.919896e-01 5.454025e-01 0.144440724
## BineSeedPerPlantMg    4.828206e-01 9.745207e-01 1.048645e-01 0.996985714
## BineSeedPerPlantMo    6.984874e-07 4.186992e-04 6.718352e-01 0.734023746
## BineSeedPerPlantNi    3.129044e-01 9.422482e-03 9.653250e-04 0.034628873
## BineSeedPerPlantP     4.734489e-01 7.360652e-01 2.117347e-09 0.027479114
## BineSeedPerPlantS     7.546150e-11 5.483926e-02 1.217436e-01 0.033370807
## BineSeedPerPlantS.1   3.234991e-02 6.547699e-01 7.361112e-03 0.323525964
## BineSeedPerPlantZn    6.598027e-06 1.918741e-05 8.990283e-01 0.481319917
##                             SoilCa       SoilCo       SoilCu       SoilFe
## BineM                 2.963318e-02 2.300933e-01 1.410986e-03 6.811221e-01
## SeedM                 8.377317e-01 3.477471e-01 1.688090e-01 3.627767e-02
## BineSeedM             3.959852e-01 9.831273e-01 2.369009e-02 1.504967e-01
## SeedN                 6.723663e-03 3.812530e-01 4.311786e-03 2.005809e-01
## SeedMOne              1.222979e-03 2.450010e-03 1.011099e-01 2.937610e-02
## NodPerPlant           9.294957e-02 3.036141e-05 1.879477e-04 5.718002e-01
## NodPerPlant.1         6.077379e-02 1.481222e-03 2.960524e-04 9.612897e-01
## Mic                   6.340649e-01 2.870553e-01 6.811619e-01 8.562705e-01
## Ves                   2.297667e-01 4.678691e-01 2.238593e-01 4.943105e-01
## Arb                   5.255699e-01 3.731124e-01 5.560720e-01 9.749811e-01
## pH                    2.941081e-01 1.471802e-01 4.563705e-01 8.225832e-05
## NitBine               3.020725e-04 6.464203e-02 3.304700e-07 7.796976e-01
## Nit15                 4.971269e-01 8.135614e-01 1.217540e-01 8.250728e-01
## NitPerPlant           9.810376e-01 4.712441e-01 9.692018e-01 7.039149e-01
## Nit15PerPlant         8.868443e-01 7.727013e-01 7.651022e-02 2.389926e-01
## NitSeed               4.153288e-02 6.962251e-01 1.098642e-01 8.549230e-01
## NitSeed15             2.134241e-01 7.002176e-02 3.963675e-01 4.038940e-01
## NitSeedPerPlant       4.326253e-01 3.135096e-01 3.955366e-01 3.833493e-02
## Nit15SeedPerPlant     3.180532e-01 4.793910e-01 3.361183e-01 6.049728e-03
## NitBineSeedPerPlant   4.639196e-01 3.883451e-01 4.235896e-01 4.757411e-02
## Nit15BineSeedPerPlant 4.313949e-01 4.787265e-01 8.908524e-01 5.359489e-03
## BineAl                4.011186e-02 1.532129e-01 6.642762e-05 1.213426e-01
## BineB                 6.620126e-04 2.213686e-03 2.335524e-06 6.410322e-01
## BineCa                1.735610e-05 2.614771e-05 2.143088e-08 2.720304e-02
## BineCo                4.417078e-03 5.753587e-01 1.005682e-03 7.056848e-01
## BineCu                4.121573e-02 9.388438e-01 1.457256e-02 7.657127e-01
## BineFe                3.020069e-01 2.588775e-02 3.967354e-01 1.485695e-01
## BineK                 5.646892e-01 2.135523e-01 2.225466e-01 8.721483e-02
## BineMg                9.779568e-02 8.366739e-01 7.235523e-03 1.160991e-01
## BineMn                3.101781e-01 5.179888e-01 5.808130e-02 4.189458e-03
## BineMo                1.933651e-02 2.266066e-02 1.264293e-03 2.434542e-04
## BineNi                1.709358e-03 3.605540e-02 1.938231e-05 7.021294e-01
## BineP                 3.352056e-01 6.391479e-01 1.129044e-01 8.776888e-01
## BineS                 6.349712e-06 1.664980e-02 1.185139e-07 7.676701e-02
## BineZn                3.143157e-01 6.368277e-02 2.705926e-01 2.067777e-02
## SeedAl                2.551913e-01 1.599300e-03 3.846477e-01 4.498072e-04
## SeedB                 2.930588e-04 2.544292e-01 2.099127e-02 4.354141e-01
## SeedCo                3.962271e-01 2.874348e-01 7.005095e-01 4.478020e-02
## SeedCu                2.572734e-01 1.665715e-01 7.084969e-02 9.678041e-01
## SeedFe                1.935996e-01 1.914146e-03 2.328456e-01 6.007674e-01
## SeedK                 2.883010e-01 8.411138e-01 1.887677e-02 9.017710e-01
## SeedMg                5.987513e-01 2.090704e-01 9.862921e-01 2.791170e-01
## SeedMn                8.989194e-02 4.673772e-02 1.732474e-01 7.230193e-01
## SeedMo                6.154718e-02 9.123974e-01 6.306276e-01 1.544619e-02
## SeedNi                1.877369e-02 2.814914e-01 4.520422e-02 1.191880e-01
## SeedP                 7.741907e-02 1.262670e-01 1.447192e-02 7.319418e-01
## SeedS                 1.591141e-01 1.078963e-01 7.599643e-01 2.948042e-01
## SeedZn                4.229227e-01 3.760210e-02 1.147310e-01 2.441053e-01
## SoilAl                6.094209e-01 9.325897e-01 3.148976e-01 5.546177e-05
## SoilB                 6.784410e-01 4.322346e-03 1.224167e-03 8.331435e-01
## SoilCa                0.000000e+00 2.151466e-03 2.234896e-07 3.656974e-02
## SoilCo                2.151466e-03 0.000000e+00 1.161474e-07 1.059403e-02
## SoilCu                2.234896e-07 1.161474e-07 0.000000e+00 4.823911e-01
## SoilFe                3.656974e-02 1.059403e-02 4.823911e-01 0.000000e+00
## SoilK                 7.664090e-02 1.139313e-05 1.355435e-02 2.774073e-02
## SoilMg                8.993112e-02 9.458658e-06 1.306327e-02 3.288138e-02
## SoilMn                3.838821e-03 1.927048e-07 4.206787e-04 3.332985e-02
## SoilMo                7.219054e-06 7.928185e-02 1.074463e-04 1.966466e-02
## SoilNi                5.452483e-04 5.800346e-34 1.472364e-08 2.608546e-02
## SoilP                 1.514160e-04 1.386519e-10 3.323238e-10 6.743397e-01
## SoilS                 7.323750e-03 8.449411e-09 5.256973e-05 3.579940e-01
## SoilZn                9.880835e-03 4.656032e-01 8.244038e-01 4.095640e-01
## BinePerPlantAl        7.544700e-02 2.636050e-01 5.441274e-02 7.036308e-01
## BinePerPlantB         5.018788e-01 2.124998e-01 2.226651e-01 4.877773e-01
## BinePerPLantCa        5.676772e-01 2.079446e-01 7.038973e-01 4.837084e-02
## BinePerPlantCo        3.286648e-01 8.729999e-02 3.533551e-02 9.707889e-01
## BinePerPlantCu        2.174960e-01 1.176930e-01 4.361013e-02 2.694191e-01
## BinePerPlantFe        4.259017e-04 2.812061e-04 9.930217e-06 3.125170e-01
## BinePerPlantK         8.403825e-03 9.481221e-02 2.074349e-03 9.931948e-01
## BinePerPlantMg        2.796240e-01 3.269246e-02 1.599270e-01 1.020739e-01
## BinePerPlantMn        5.587548e-01 2.070226e-01 2.848893e-01 9.080759e-03
## BinePerPlantMo        6.807892e-01 3.417335e-02 7.295500e-02 1.244282e-04
## BinePerPlantNi        2.138355e-01 3.859753e-01 4.575508e-02 6.382395e-01
## BinePerPlantP         7.123758e-02 7.084629e-03 2.041945e-02 5.776900e-01
## BinePerPlantSe        8.573078e-01 7.923562e-01 8.764964e-01 2.478921e-02
## BinePerPLantZn        4.380685e-01 7.917838e-04 1.070195e-01 1.960072e-02
## SeedPerPlantAl        9.648664e-01 8.207298e-01 3.791767e-02 1.497751e-01
## SeedPerPlantB         2.270939e-01 8.058063e-01 3.621310e-02 3.438319e-01
## SeedPerPlantCa        1.761021e-01 7.748473e-02 9.503707e-01 3.012578e-02
## SeedPerPlantCo        2.064588e-01 1.677927e-01 4.177084e-01 5.896714e-02
## SeedPerPlantCu        1.131073e-01 2.149497e-02 8.117773e-01 1.589171e-02
## SeedPerPlantFe        2.761252e-01 1.705510e-02 7.419339e-01 1.220919e-01
## SeedPerPlantK         8.692733e-01 4.317672e-01 5.845060e-02 1.447306e-01
## SeedPerPlantMg        3.901152e-01 2.133235e-01 3.419636e-01 3.437604e-02
## SeedPerPlantMn        2.024391e-01 5.529394e-02 8.481657e-01 2.626958e-01
## SeedPerPlantMo        1.794620e-01 3.848865e-01 4.953337e-01 1.424408e-03
## SeedPerPlantNi        6.446749e-01 8.338293e-01 3.912910e-02 3.129561e-01
## SeedPerPlantP         4.069045e-02 1.581957e-02 4.479354e-01 9.509208e-03
## SeedPerPlantS         4.083669e-01 2.311428e-01 2.868660e-01 6.050785e-02
## SeedPerPlantZn        5.730633e-01 5.141177e-02 6.883852e-01 2.673985e-01
## BineSeedPerPlantAl    9.648664e-01 8.207298e-01 3.791767e-02 1.497751e-01
## BineSeedPerPlantB     7.441445e-02 2.853522e-01 4.859517e-02 7.499199e-01
## BineSeedPerPlantCa    3.811668e-01 1.390710e-01 2.772300e-01 2.917553e-01
## BineSeedPerPlantCo    5.303927e-01 1.946474e-01 7.521237e-01 4.366042e-02
## BineSeedPerPlantCu    1.458579e-01 3.729088e-02 9.429770e-01 2.005554e-02
## BineSeedPerPlantFe    3.217586e-01 2.582205e-02 6.639667e-01 1.160811e-01
## BineSeedPerPlantK     1.146320e-03 1.261192e-03 6.050844e-06 4.912169e-01
## BineSeedPerPlantMg    4.019169e-02 2.508270e-01 4.010555e-03 6.253663e-01
## BineSeedPerPlantMo    2.974059e-01 1.364273e-01 7.028828e-01 4.129834e-01
## BineSeedPerPlantNi    7.556530e-01 2.618591e-01 2.023536e-01 4.575790e-02
## BineSeedPerPlantP     8.171052e-01 3.595659e-02 3.252840e-01 4.688046e-05
## BineSeedPerPlantS     6.462710e-02 2.572616e-02 5.793343e-01 1.146148e-02
## BineSeedPerPlantS.1   1.857784e-01 4.929595e-02 1.664041e-02 2.806303e-01
## BineSeedPerPlantZn    5.740379e-01 5.257763e-02 6.888830e-01 2.586698e-01
##                              SoilK       SoilMg       SoilMn       SoilMo
## BineM                 2.855802e-05 1.961378e-05 1.660407e-01 2.247808e-02
## SeedM                 4.027763e-10 2.799423e-10 7.538478e-01 2.521754e-01
## BineSeedM             1.260529e-08 7.956769e-09 6.625963e-01 8.486080e-02
## SeedN                 2.860483e-02 2.387634e-02 8.118906e-01 1.279713e-03
## SeedMOne              2.958565e-11 3.962234e-11 5.458818e-01 9.335008e-02
## NodPerPlant           7.640260e-03 8.884729e-03 4.454533e-04 4.100448e-02
## NodPerPlant.1         9.687143e-01 9.727853e-01 1.446053e-02 3.531213e-03
## Mic                   3.894700e-01 3.878507e-01 9.087793e-01 8.793174e-01
## Ves                   3.417522e-01 3.308912e-01 2.852540e-02 3.689511e-01
## Arb                   9.548662e-02 9.520902e-02 8.844033e-01 6.775337e-01
## pH                    3.313528e-01 3.703416e-01 1.232476e-05 3.230612e-03
## NitBine               2.342918e-01 2.000535e-01 2.891089e-01 2.726495e-02
## Nit15                 4.302668e-03 2.473677e-03 4.310201e-01 7.751516e-01
## NitPerPlant           1.895262e-05 1.924449e-05 1.365776e-01 2.323489e-01
## Nit15PerPlant         3.028009e-01 3.810417e-01 8.223261e-01 6.433909e-01
## NitSeed               3.294541e-01 3.530141e-01 7.840805e-01 2.028566e-01
## NitSeed15             4.996040e-10 4.408498e-10 3.610059e-01 4.776692e-01
## NitSeedPerPlant       1.441326e-09 1.171403e-09 5.872871e-01 3.683674e-01
## Nit15SeedPerPlant     7.220997e-05 7.332599e-05 5.282112e-01 9.757961e-01
## NitBineSeedPerPlant   4.379350e-10 3.574409e-10 7.315656e-01 3.286197e-01
## Nit15BineSeedPerPlant 1.801262e-04 2.403943e-04 6.557993e-01 8.388197e-01
## BineAl                6.995394e-02 6.125387e-02 8.886249e-01 6.931141e-06
## BineB                 7.756471e-01 7.354027e-01 5.261456e-01 1.891873e-04
## BineCa                1.391241e-02 1.810496e-02 1.170235e-01 1.035476e-02
## BineCo                2.553668e-02 2.161877e-02 6.083425e-01 1.959160e-04
## BineCu                2.154350e-04 1.431659e-04 2.532952e-01 2.797355e-01
## BineFe                1.711900e-08 1.228045e-08 2.106978e-01 3.924539e-01
## BineK                 3.594477e-05 3.603764e-05 1.218071e-01 4.440932e-01
## BineMg                3.570586e-03 2.961739e-03 1.427210e-01 7.109455e-04
## BineMn                8.831211e-01 8.802406e-01 3.073916e-03 2.505887e-08
## BineMo                4.349808e-01 5.182517e-01 5.776892e-04 5.084075e-01
## BineNi                3.895050e-01 3.454414e-01 8.835371e-01 1.325188e-03
## BineP                 6.049629e-06 4.012625e-06 8.941605e-01 4.930297e-01
## BineS                 2.605017e-01 2.262090e-01 1.096244e-02 4.422661e-02
## BineZn                2.947581e-05 2.439854e-05 3.470286e-02 6.700172e-05
## SeedAl                9.466857e-08 9.752223e-08 1.932986e-01 6.532343e-01
## SeedB                 6.738305e-01 5.885610e-01 1.051106e-02 2.224454e-01
## SeedCo                6.465188e-01 6.082782e-01 1.777067e-01 8.972827e-01
## SeedCu                1.475087e-02 1.538963e-02 6.411341e-01 7.738634e-01
## SeedFe                4.084935e-01 3.634259e-01 8.283317e-01 4.161481e-01
## SeedK                 9.173815e-01 9.796621e-01 4.507991e-02 5.847068e-01
## SeedMg                3.308164e-01 3.108238e-01 1.137530e-01 6.976795e-01
## SeedMn                2.534136e-01 2.279475e-01 2.839990e-01 2.736174e-04
## SeedMo                1.791125e-01 1.825083e-01 8.659852e-03 8.732085e-02
## SeedNi                8.929161e-02 9.528276e-02 6.214995e-02 5.299174e-01
## SeedP                 7.631286e-02 7.610202e-02 5.246064e-01 3.718991e-01
## SeedS                 5.660699e-02 5.018067e-02 9.041918e-01 7.827164e-01
## SeedZn                2.685102e-01 2.330192e-01 3.281903e-01 4.050487e-03
## SoilAl                2.220753e-01 2.440394e-01 3.855450e-01 2.141999e-08
## SoilB                 9.749024e-03 6.958079e-03 2.258028e-02 2.146784e-01
## SoilCa                7.664090e-02 8.993112e-02 3.838821e-03 7.219054e-06
## SoilCo                1.139313e-05 9.458658e-06 1.927048e-07 7.928185e-02
## SoilCu                1.355435e-02 1.306327e-02 4.206787e-04 1.074463e-04
## SoilFe                2.774073e-02 3.288138e-02 3.332985e-02 1.966466e-02
## SoilK                 0.000000e+00 1.106603e-73 3.333013e-01 5.878051e-01
## SoilMg                1.106603e-73 0.000000e+00 3.471651e-01 6.306124e-01
## SoilMn                3.333013e-01 3.471651e-01 0.000000e+00 2.334754e-01
## SoilMo                5.878051e-01 6.306124e-01 2.334754e-01 0.000000e+00
## SoilNi                5.854660e-05 4.867905e-05 1.149908e-06 1.541065e-02
## SoilP                 5.459314e-05 4.698321e-05 2.064063e-03 8.170713e-05
## SoilS                 2.105304e-02 1.866949e-02 8.232320e-04 2.850390e-03
## SoilZn                2.470922e-03 2.357411e-03 6.154464e-02 7.583874e-02
## BinePerPlantAl        2.763922e-05 2.126055e-05 1.153787e-02 6.830144e-01
## BinePerPlantB         1.334657e-05 1.312088e-05 7.280157e-02 1.938804e-01
## BinePerPLantCa        6.677831e-12 7.285142e-12 6.654913e-01 4.668278e-01
## BinePerPlantCo        2.124079e-04 1.737487e-04 7.014770e-03 6.003520e-01
## BinePerPlantCu        4.578495e-03 4.321508e-03 5.564027e-01 5.692499e-03
## BinePerPlantFe        9.607337e-01 9.312277e-01 7.057176e-03 6.817302e-02
## BinePerPlantK         2.269995e-04 1.602072e-04 3.369025e-02 2.043598e-02
## BinePerPlantMg        3.069268e-02 2.877944e-02 1.364416e-06 4.079088e-01
## BinePerPlantMn        2.806887e-02 2.558310e-02 4.658674e-07 3.436452e-03
## BinePerPlantMo        4.403148e-02 5.453954e-02 8.332712e-04 1.901400e-02
## BinePerPlantNi        1.982082e-06 1.532883e-06 4.842945e-02 2.038690e-01
## BinePerPlantP         3.857660e-01 3.839844e-01 1.454362e-02 4.506685e-03
## BinePerPlantSe        5.813851e-06 5.359113e-06 7.396460e-01 5.100358e-02
## BinePerPLantZn        9.274773e-01 9.108432e-01 2.583212e-06 4.141785e-02
## SeedPerPlantAl        9.636181e-07 7.110604e-07 5.045258e-01 3.289905e-01
## SeedPerPlantB         8.570911e-07 4.292263e-07 3.651582e-01 2.636407e-01
## SeedPerPlantCa        8.420827e-09 5.454363e-09 4.947703e-01 9.344482e-01
## SeedPerPlantCo        3.789033e-06 2.461652e-06 6.955697e-01 7.523767e-01
## SeedPerPlantCu        1.540637e-07 1.121845e-07 3.281002e-01 4.793100e-01
## SeedPerPlantFe        4.853850e-07 2.842064e-07 4.681631e-01 8.052530e-01
## SeedPerPlantK         3.415175e-07 2.114142e-07 7.615711e-01 3.988761e-01
## SeedPerPlantMg        3.536386e-08 2.347870e-08 8.631999e-01 3.287096e-01
## SeedPerPlantMn        9.087199e-09 5.002230e-09 5.673723e-01 2.361152e-01
## SeedPerPlantMo        6.040455e-04 5.220128e-04 1.778064e-02 3.675293e-02
## SeedPerPlantNi        1.018291e-02 8.772709e-03 8.006168e-01 1.906192e-01
## SeedPerPlantP         1.689954e-07 1.348841e-07 2.765993e-01 7.385452e-01
## SeedPerPlantS         7.460505e-08 5.043355e-08 7.104043e-01 4.002263e-01
## SeedPerPlantZn        2.218336e-09 1.062057e-09 6.471341e-01 6.518767e-01
## BineSeedPerPlantAl    9.636181e-07 7.110604e-07 5.045258e-01 3.289905e-01
## BineSeedPerPlantB     1.509560e-05 1.123817e-05 1.273955e-02 6.502633e-01
## BineSeedPerPlantCa    2.263159e-07 2.065247e-07 7.909585e-02 2.350056e-01
## BineSeedPerPlantCo    3.673807e-12 3.790501e-12 6.598642e-01 4.718001e-01
## BineSeedPerPlantCu    6.169795e-08 4.345781e-08 4.576147e-01 4.687237e-01
## BineSeedPerPlantFe    3.528551e-07 2.057985e-07 5.005465e-01 6.940688e-01
## BineSeedPerPlantK     3.878716e-01 3.627707e-01 9.936221e-03 6.218343e-02
## BineSeedPerPlantMg    6.704839e-06 4.217796e-06 6.151988e-02 2.561521e-02
## BineSeedPerPlantMo    8.030265e-09 4.415346e-09 2.391416e-01 2.163699e-01
## BineSeedPerPlantNi    1.878482e-03 1.590048e-03 3.885563e-06 1.045452e-02
## BineSeedPerPlantP     4.181385e-03 5.263484e-03 2.087294e-03 6.359925e-03
## BineSeedPerPlantS     3.523809e-08 2.701741e-08 3.837948e-01 6.659117e-01
## BineSeedPerPlantS.1   2.031719e-02 1.930212e-02 4.293977e-02 5.433981e-03
## BineSeedPerPlantZn    1.856402e-09 8.855625e-10 6.522606e-01 6.713565e-01
##                             SoilNi        SoilP        SoilS       SoilZn
## BineM                 2.567026e-01 6.696890e-01 1.321809e-01 2.564993e-04
## SeedM                 5.083392e-01 2.638312e-01 6.314801e-01 6.560220e-02
## BineSeedM             9.082374e-01 6.338503e-01 3.316208e-01 5.914686e-03
## SeedN                 5.553840e-01 1.786865e-01 1.222232e-01 1.431195e-02
## SeedMOne              1.562049e-02 6.154510e-04 1.966330e-01 7.769142e-01
## NodPerPlant           1.152114e-04 5.217284e-08 9.675884e-03 2.062840e-01
## NodPerPlant.1         9.126317e-04 9.533578e-05 1.374216e-02 7.478985e-01
## Mic                   3.533641e-01 7.933915e-01 8.283900e-01 4.801573e-03
## Ves                   4.934131e-01 3.301750e-01 5.498576e-03 8.226560e-01
## Arb                   4.985380e-01 7.147953e-01 6.963395e-01 6.475205e-03
## pH                    2.708695e-01 3.631301e-01 8.561094e-01 3.715725e-01
## NitBine               1.758248e-01 9.604759e-02 3.232358e-01 3.599810e-02
## Nit15                 9.841661e-01 3.310583e-01 6.828917e-01 7.146355e-01
## NitPerPlant           3.388779e-01 6.501416e-01 1.077652e-01 2.220285e-04
## Nit15PerPlant         9.278517e-01 9.445555e-01 5.517928e-01 2.140115e-02
## NitSeed               7.786241e-01 2.637670e-01 4.948461e-01 4.253990e-01
## NitSeed15             8.126602e-02 8.986218e-04 6.540396e-01 5.086759e-02
## NitSeedPerPlant       5.680243e-01 1.991217e-01 5.384687e-01 1.473484e-01
## Nit15SeedPerPlant     7.819437e-01 8.296083e-01 7.975513e-01 5.977514e-01
## NitBineSeedPerPlant   6.686787e-01 2.098649e-01 4.499961e-01 7.855384e-02
## Nit15BineSeedPerPlant 8.423815e-01 8.348996e-01 6.561536e-01 1.870837e-01
## BineAl                1.594513e-01 2.640786e-02 1.463844e-01 1.140884e-02
## BineB                 5.998001e-03 1.345236e-02 4.188150e-02 1.271411e-03
## BineCa                5.456727e-04 8.018712e-04 1.989859e-02 1.630610e-01
## BineCo                5.481336e-01 9.839788e-01 4.740344e-01 2.164110e-04
## BineCu                8.116127e-01 1.040900e-01 9.080257e-01 1.921678e-06
## BineFe                4.511440e-02 4.047428e-04 3.425301e-01 1.720797e-05
## BineK                 2.501689e-01 4.908826e-02 3.524777e-01 4.110674e-02
## BineMg                8.262845e-01 7.550828e-01 6.587043e-01 2.938880e-03
## BineMn                3.336486e-01 2.690792e-02 1.130459e-01 4.886941e-01
## BineMo                7.929009e-02 7.876819e-01 3.155671e-01 2.683829e-01
## BineNi                7.685897e-02 2.206180e-01 1.893386e-01 1.469353e-03
## BineP                 5.199870e-01 3.167127e-02 9.815474e-01 2.761823e-05
## BineS                 2.389263e-02 2.925743e-01 1.108232e-01 4.233566e-05
## BineZn                1.905646e-01 1.231763e-01 9.429199e-01 3.060757e-03
## SeedAl                5.609533e-03 7.736261e-02 4.911842e-01 5.292695e-01
## SeedB                 1.588414e-01 5.464502e-02 7.594701e-02 1.368866e-01
## SeedCo                4.475892e-01 1.761479e-01 7.991013e-01 4.947375e-03
## SeedCu                2.248032e-01 8.181992e-01 8.434311e-01 1.657678e-04
## SeedFe                5.318762e-03 5.720697e-02 3.538943e-01 8.142357e-02
## SeedK                 6.925201e-01 1.654236e-01 4.009641e-01 1.430242e-01
## SeedMg                4.756502e-01 8.389650e-01 5.500346e-01 4.170150e-02
## SeedMn                7.667289e-02 2.178912e-01 1.457736e-01 6.087539e-02
## SeedMo                8.409429e-01 4.825160e-02 3.904859e-01 2.680606e-03
## SeedNi                1.324632e-01 3.648291e-02 4.276881e-01 2.898797e-01
## SeedP                 2.879944e-01 7.555102e-01 7.380085e-01 1.358572e-04
## SeedS                 3.096928e-01 5.763736e-01 5.665429e-01 5.279974e-02
## SeedZn                1.364844e-02 1.850406e-02 4.018146e-01 1.097659e-01
## SoilAl                4.441481e-01 2.932142e-02 4.366935e-02 4.564931e-01
## SoilB                 2.597582e-02 3.583039e-02 1.732153e-01 4.631097e-01
## SoilCa                5.452483e-04 1.514160e-04 7.323750e-03 9.880835e-03
## SoilCo                5.800346e-34 1.386519e-10 8.449411e-09 4.656032e-01
## SoilCu                1.472364e-08 3.323238e-10 5.256973e-05 8.244038e-01
## SoilFe                2.608546e-02 6.743397e-01 3.579940e-01 4.095640e-01
## SoilK                 5.854660e-05 5.459314e-05 2.105304e-02 2.470922e-03
## SoilMg                4.867905e-05 4.698321e-05 1.866949e-02 2.357411e-03
## SoilMn                1.149908e-06 2.064063e-03 8.232320e-04 6.154464e-02
## SoilMo                1.541065e-02 8.170713e-05 2.850390e-03 7.583874e-02
## SoilNi                0.000000e+00 4.665554e-12 1.104139e-09 3.879893e-01
## SoilP                 4.665554e-12 0.000000e+00 1.945463e-05 3.502060e-01
## SoilS                 1.104139e-09 1.945463e-05 0.000000e+00 8.807435e-01
## SoilZn                3.879893e-01 3.502060e-01 8.807435e-01 0.000000e+00
## BinePerPlantAl        3.624164e-01 5.981765e-01 1.864947e-01 1.876050e-04
## BinePerPlantB         2.362695e-01 5.202624e-02 9.911283e-01 1.570649e-01
## BinePerPLantCa        3.585430e-01 9.772446e-02 8.487644e-01 3.528646e-03
## BinePerPlantCo        1.331371e-01 4.803962e-01 9.748598e-02 7.581294e-03
## BinePerPlantCu        1.044700e-01 5.416992e-02 4.590199e-02 1.119110e-01
## BinePerPlantFe        1.022685e-03 4.051579e-04 4.342751e-03 4.602726e-01
## BinePerPlantK         1.306723e-01 3.693693e-01 5.406095e-02 1.165099e-04
## BinePerPlantMg        7.179148e-02 7.481545e-01 9.803458e-02 1.431300e-02
## BinePerPlantMn        4.175565e-01 2.902692e-01 9.460140e-01 2.571990e-02
## BinePerPlantMo        7.552987e-02 9.330588e-01 7.262113e-01 6.838613e-01
## BinePerPlantNi        3.903482e-01 9.242369e-01 1.634027e-01 1.267188e-03
## BinePerPlantP         6.225310e-03 2.035906e-04 1.004078e-02 4.852949e-01
## BinePerPlantSe        7.386057e-01 9.673562e-01 3.706652e-01 5.595067e-02
## BinePerPLantZn        8.995900e-03 1.194194e-01 1.897086e-01 1.659586e-01
## SeedPerPlantAl        7.440864e-01 6.898412e-01 4.768467e-01 3.911058e-02
## SeedPerPlantB         9.956637e-01 7.494538e-01 2.306803e-01 2.120669e-02
## SeedPerPlantCa        1.876999e-01 8.535888e-02 9.217600e-01 5.071529e-01
## SeedPerPlantCo        2.984349e-01 3.920032e-01 6.882094e-01 7.980520e-01
## SeedPerPlantCu        5.409429e-02 5.769875e-02 9.045372e-01 9.776509e-01
## SeedPerPlantFe        4.391683e-02 2.508137e-02 9.408590e-01 8.094591e-01
## SeedPerPlantK         5.898725e-01 4.200782e-01 5.286573e-01 2.786794e-01
## SeedPerPlantMg        4.083809e-01 2.163955e-01 4.933093e-01 5.234967e-01
## SeedPerPlantMn        9.567790e-02 3.524893e-02 6.235100e-01 4.367740e-01
## SeedPerPlantMo        7.174951e-01 7.746748e-01 3.730251e-01 6.976480e-01
## SeedPerPlantNi        7.585943e-01 7.028744e-01 3.472380e-01 9.515012e-01
## SeedPerPlantP         6.320327e-02 5.912303e-02 9.961651e-01 7.486821e-01
## SeedPerPlantS         4.354916e-01 2.613858e-01 5.146000e-01 4.538443e-01
## SeedPerPlantZn        5.225110e-02 2.109505e-02 9.579469e-01 3.481670e-01
## BineSeedPerPlantAl    7.440864e-01 6.898412e-01 4.768467e-01 3.911058e-02
## BineSeedPerPlantB     3.783988e-01 5.984026e-01 1.797979e-01 1.841334e-04
## BineSeedPerPlantCa    1.823262e-01 3.539125e-02 9.763498e-01 1.584811e-01
## BineSeedPerPlantCo    3.433354e-01 9.970532e-02 8.350860e-01 5.405797e-03
## BineSeedPerPlantCu    8.156556e-02 7.551260e-02 8.088346e-01 8.634011e-01
## BineSeedPerPlantFe    6.189784e-02 3.869184e-02 9.683864e-01 7.452324e-01
## BineSeedPerPlantK     3.100244e-03 1.722844e-03 5.287715e-03 3.755312e-01
## BineSeedPerPlantMg    2.670659e-01 6.240486e-01 6.812995e-02 5.649887e-04
## BineSeedPerPlantMo    1.921127e-01 5.357959e-02 8.210497e-01 2.800701e-01
## BineSeedPerPlantNi    4.436186e-01 2.977575e-01 7.867348e-01 2.482016e-02
## BineSeedPerPlantP     1.131420e-01 9.574411e-01 9.950992e-01 7.131697e-01
## BineSeedPerPlantS     8.861266e-02 7.175060e-02 9.067292e-01 9.716005e-01
## BineSeedPerPlantS.1   3.240458e-02 4.469016e-03 1.308210e-02 3.934145e-01
## BineSeedPerPlantZn    5.331350e-02 2.195612e-02 9.670608e-01 3.392392e-01
##                       BinePerPlantAl BinePerPlantB BinePerPLantCa
## BineM                   1.494682e-19  3.709157e-03   3.011352e-11
## SeedM                   3.474709e-08  7.028634e-03   1.032774e-13
## BineSeedM               1.568495e-13  3.117206e-03   7.822823e-15
## SeedN                   1.412155e-07  8.380075e-02   3.871792e-05
## SeedMOne                9.356318e-03  3.993424e-04   2.937633e-09
## NodPerPlant             5.345398e-01  1.011553e-01   4.259498e-02
## NodPerPlant.1           1.970743e-01  3.978180e-01   3.796191e-01
## Mic                     2.572149e-02  4.725200e-01   2.695650e-01
## Ves                     3.906745e-02  5.599894e-02   2.813280e-02
## Arb                     1.560270e-03  3.500957e-01   4.105176e-02
## pH                      1.831849e-01  1.424032e-01   3.176495e-01
## NitBine                 1.360965e-05  5.602082e-01   8.710135e-02
## Nit15                   4.675483e-05  2.733402e-01   2.013450e-04
## NitPerPlant             1.006295e-13  3.239943e-10   2.492275e-17
## Nit15PerPlant           2.266859e-01  3.352521e-04   3.248872e-02
## NitSeed                 7.285713e-01  1.119663e-01   1.624875e-01
## NitSeed15               5.937317e-08  1.149821e-05   5.441099e-14
## NitSeedPerPlant         1.942423e-06  6.122310e-03   2.764867e-13
## Nit15SeedPerPlant       1.308471e-03  1.292357e-03   3.583268e-06
## NitBineSeedPerPlant     1.089113e-07  1.251573e-03   7.528009e-16
## Nit15BineSeedPerPlant   1.402235e-03  2.606024e-05   1.371072e-06
## BineAl                  2.845590e-03  4.938829e-01   7.925728e-03
## BineB                   4.133077e-04  1.429556e-02   2.344668e-01
## BineCa                  1.297918e-01  5.180737e-04   2.293260e-02
## BineCo                  2.449042e-04  6.774191e-01   2.670200e-02
## BineCu                  1.264894e-10  9.541677e-02   3.575052e-05
## BineFe                  1.266913e-05  3.376824e-02   6.758848e-08
## BineK                   3.783762e-04  6.775645e-01   3.980216e-04
## BineMg                  3.717573e-05  8.730626e-01   2.666018e-04
## BineMn                  9.370495e-01  1.257598e-02   4.389061e-01
## BineMo                  3.027543e-02  2.706902e-01   1.941904e-01
## BineNi                  5.572171e-04  1.632818e-01   2.878091e-01
## BineP                   1.755047e-11  3.216351e-02   4.138118e-07
## BineS                   1.421906e-06  8.579881e-01   1.431327e-01
## BineZn                  3.561799e-03  7.130810e-01   3.594074e-05
## SeedAl                  1.842997e-04  3.472888e-06   4.084685e-10
## SeedB                   2.414988e-01  3.843861e-01   8.257815e-01
## SeedCo                  4.034722e-01  2.860733e-01   5.746169e-01
## SeedCu                  3.542436e-07  1.027167e-01   3.530175e-04
## SeedFe                  3.533539e-01  8.013289e-02   7.387156e-01
## SeedK                   4.460501e-01  4.244742e-01   3.701922e-01
## SeedMg                  2.402928e-01  4.467526e-01   6.877820e-01
## SeedMn                  9.186650e-01  5.863761e-03   4.025668e-01
## SeedMo                  9.853845e-05  9.305876e-04   2.992681e-02
## SeedNi                  2.064662e-02  1.453944e-02   1.253454e-02
## SeedP                   1.685595e-07  1.992598e-01   3.295186e-03
## SeedS                   4.958186e-01  5.998220e-01   1.880766e-01
## SeedZn                  9.844593e-01  5.146090e-03   7.091551e-01
## SoilAl                  9.497619e-01  7.121336e-01   3.951675e-02
## SoilB                   3.269261e-01  7.761998e-01   2.796661e-01
## SoilCa                  7.544700e-02  5.018788e-01   5.676772e-01
## SoilCo                  2.636050e-01  2.124998e-01   2.079446e-01
## SoilCu                  5.441274e-02  2.226651e-01   7.038973e-01
## SoilFe                  7.036308e-01  4.877773e-01   4.837084e-02
## SoilK                   2.763922e-05  1.334657e-05   6.677831e-12
## SoilMg                  2.126055e-05  1.312088e-05   7.285142e-12
## SoilMn                  1.153787e-02  7.280157e-02   6.654913e-01
## SoilMo                  6.830144e-01  1.938804e-01   4.668278e-01
## SoilNi                  3.624164e-01  2.362695e-01   3.585430e-01
## SoilP                   5.981765e-01  5.202624e-02   9.772446e-02
## SoilS                   1.864947e-01  9.911283e-01   8.487644e-01
## SoilZn                  1.876050e-04  1.570649e-01   3.528646e-03
## BinePerPlantAl          0.000000e+00  4.168597e-08   7.634439e-14
## BinePerPlantB           4.168597e-08  0.000000e+00   8.404129e-12
## BinePerPLantCa          7.634439e-14  8.404129e-12   0.000000e+00
## BinePerPlantCo          7.708180e-22  1.374072e-06   1.085197e-13
## BinePerPlantCu          6.541684e-09  1.164841e-03   1.892199e-09
## BinePerPlantFe          5.536097e-08  1.491853e-02   4.593115e-03
## BinePerPlantK           7.038206e-23  1.393088e-04   1.075175e-11
## BinePerPlantMg          7.281951e-13  4.643152e-10   2.336895e-06
## BinePerPlantMn          1.970775e-09  2.736790e-07   1.158034e-03
## BinePerPlantMo          6.772505e-01  4.711589e-02   9.176391e-04
## BinePerPlantNi          4.980637e-27  2.784528e-07   1.087143e-19
## BinePerPlantP           3.189770e-05  1.014627e-03   4.417827e-05
## BinePerPlantSe          2.758901e-11  2.571017e-06   5.635081e-19
## BinePerPLantZn          1.229090e-06  7.457793e-05   3.364959e-02
## SeedPerPlantAl          4.479583e-07  8.021981e-02   2.072193e-08
## SeedPerPlantB           2.946060e-07  1.173270e-02   4.925023e-08
## SeedPerPlantCa          8.860069e-04  1.227337e-03   8.665575e-09
## SeedPerPlantCo          1.975162e-03  1.787074e-02   4.405974e-07
## SeedPerPlantCu          6.580698e-03  1.197438e-02   4.141588e-08
## SeedPerPlantFe          4.712013e-04  2.891430e-03   2.565194e-08
## SeedPerPlantK           4.228003e-05  8.612466e-02   1.797612e-07
## SeedPerPlantMg          1.324471e-04  1.597249e-02   1.564429e-09
## SeedPerPlantMn          2.615817e-05  1.699619e-04   5.708143e-09
## SeedPerPlantMo          2.532623e-01  6.321050e-01   6.926521e-04
## SeedPerPlantNi          7.561288e-02  9.808283e-01   1.010321e-02
## SeedPerPlantP           3.336086e-02  1.276292e-02   1.289921e-07
## SeedPerPlantS           2.950221e-04  6.933099e-02   1.120296e-08
## SeedPerPlantZn          2.457777e-06  2.453179e-05   4.523770e-10
## BineSeedPerPlantAl      4.479583e-07  8.021981e-02   2.072193e-08
## BineSeedPerPlantB       4.364809e-83  5.279934e-08   2.956927e-14
## BineSeedPerPlantCa      1.032351e-08  2.840321e-45   1.017626e-14
## BineSeedPerPlantCo      1.518051e-13  2.081651e-11   1.009712e-78
## BineSeedPerPlantCu      1.342467e-03  5.207280e-03   2.782370e-09
## BineSeedPerPlantFe      1.836217e-04  1.946677e-03   5.395013e-09
## BineSeedPerPlantK       1.724829e-09  9.227415e-03   3.298903e-04
## BineSeedPerPlantMg      1.916769e-21  1.034425e-04   1.629704e-14
## BineSeedPerPlantMo      5.255760e-07  8.225333e-06   2.099067e-10
## BineSeedPerPlantNi      7.557688e-12  1.230547e-07   1.748751e-05
## BineSeedPerPlantP       3.095598e-01  5.711819e-02   2.703990e-05
## BineSeedPerPlantS       6.683713e-03  4.675423e-03   4.214936e-09
## BineSeedPerPlantS.1     6.189441e-07  4.346652e-04   1.879302e-08
## BineSeedPerPlantZn      1.870429e-06  2.097793e-05   2.722832e-10
##                       BinePerPlantCo BinePerPlantCu BinePerPlantFe
## BineM                   8.980286e-19   1.173801e-13   2.653164e-08
## SeedM                   1.290804e-08   8.098674e-07   2.573478e-02
## BineSeedM               8.720929e-14   1.982998e-10   1.685925e-04
## SeedN                   1.406053e-06   2.795032e-08   4.046656e-07
## SeedMOne                4.308921e-03   1.068128e-01   3.153609e-01
## NodPerPlant             2.320188e-01   1.807564e-01   2.729247e-02
## NodPerPlant.1           9.812168e-04   2.815038e-04   3.820938e-03
## Mic                     5.978797e-02   4.100511e-01   2.079956e-02
## Ves                     7.024987e-02   8.415083e-02   3.205012e-01
## Arb                     5.307062e-03   8.134344e-02   5.793751e-03
## pH                      3.278071e-01   9.633688e-03   2.882361e-01
## NitBine                 6.340316e-05   3.873245e-04   1.208475e-06
## Nit15                   2.168507e-06   5.769171e-03   7.630697e-03
## NitPerPlant             7.643619e-14   3.344922e-10   3.452431e-04
## Nit15PerPlant           4.977348e-01   7.277604e-02   9.984760e-01
## NitSeed                 5.600998e-01   3.512500e-01   2.464360e-01
## NitSeed15               1.592485e-05   8.701765e-04   1.063841e-01
## NitSeedPerPlant         8.419669e-07   1.517805e-05   8.991809e-02
## Nit15SeedPerPlant       7.434936e-05   2.385459e-03   1.496049e-01
## NitBineSeedPerPlant     4.212672e-08   1.741743e-06   4.744414e-02
## Nit15BineSeedPerPlant   3.434095e-04   9.883925e-04   2.252510e-01
## BineAl                  9.110472e-05   1.983671e-07   2.821165e-04
## BineB                   3.041252e-04   7.830593e-05   1.415324e-04
## BineCa                  1.793708e-01   8.521573e-02   4.313216e-04
## BineCo                  4.148621e-02   3.241334e-03   7.132564e-02
## BineCu                  4.440866e-06   4.210676e-02   1.076521e-02
## BineFe                  1.586439e-03   1.003645e-02   2.701892e-01
## BineK                   9.635781e-03   3.580480e-02   4.564969e-01
## BineMg                  6.946697e-04   3.495161e-06   1.808324e-02
## BineMn                  8.863992e-01   1.422006e-03   7.073897e-01
## BineMo                  3.522480e-02   6.097324e-01   1.182000e-02
## BineNi                  1.171440e-02   1.710721e-03   6.962675e-03
## BineP                   1.660356e-06   1.023943e-03   1.689681e-02
## BineS                   6.492352e-05   1.444302e-02   3.862906e-05
## BineZn                  1.121586e-01   5.042047e-03   9.239162e-01
## SeedAl                  5.173905e-04   3.014672e-03   8.713959e-02
## SeedB                   1.296566e-01   1.446127e-01   2.540483e-02
## SeedCo                  3.094091e-01   6.898488e-01   5.432274e-01
## SeedCu                  1.142509e-05   1.931387e-03   1.037079e-02
## SeedFe                  5.755628e-01   2.966745e-01   4.277131e-01
## SeedK                   6.574988e-01   8.230345e-01   4.208742e-01
## SeedMg                  7.750907e-01   4.713371e-01   3.205610e-01
## SeedMn                  5.162671e-01   2.820239e-01   5.549710e-01
## SeedMo                  2.595201e-02   6.150092e-01   5.635150e-02
## SeedNi                  1.585676e-01   1.879338e-01   9.209701e-01
## SeedP                   1.690423e-05   1.562833e-03   1.042808e-03
## SeedS                   5.666565e-01   7.084909e-01   4.945338e-01
## SeedZn                  6.575901e-01   5.349409e-01   6.663805e-01
## SoilAl                  7.639847e-01   1.194555e-03   6.084138e-01
## SoilB                   4.133621e-01   4.649027e-01   8.514974e-02
## SoilCa                  3.286648e-01   2.174960e-01   4.259017e-04
## SoilCo                  8.729999e-02   1.176930e-01   2.812061e-04
## SoilCu                  3.533551e-02   4.361013e-02   9.930217e-06
## SoilFe                  9.707889e-01   2.694191e-01   3.125170e-01
## SoilK                   2.124079e-04   4.578495e-03   9.607337e-01
## SoilMg                  1.737487e-04   4.321508e-03   9.312277e-01
## SoilMn                  7.014770e-03   5.564027e-01   7.057176e-03
## SoilMo                  6.003520e-01   5.692499e-03   6.817302e-02
## SoilNi                  1.331371e-01   1.044700e-01   1.022685e-03
## SoilP                   4.803962e-01   5.416992e-02   4.051579e-04
## SoilS                   9.748598e-02   4.590199e-02   4.342751e-03
## SoilZn                  7.581294e-03   1.119110e-01   4.602726e-01
## BinePerPlantAl          7.708180e-22   6.541684e-09   5.536097e-08
## BinePerPlantB           1.374072e-06   1.164841e-03   1.491853e-02
## BinePerPLantCa          1.085197e-13   1.892199e-09   4.593115e-03
## BinePerPlantCo          0.000000e+00   1.231782e-14   3.557917e-11
## BinePerPlantCu          1.231782e-14   0.000000e+00   5.936691e-10
## BinePerPlantFe          3.557917e-11   5.936691e-10   0.000000e+00
## BinePerPlantK           1.002425e-23   2.485644e-16   1.143098e-10
## BinePerPlantMg          3.232218e-15   1.094187e-04   1.368399e-07
## BinePerPlantMn          2.535686e-09   1.234104e-01   3.349157e-04
## BinePerPlantMo          8.785327e-01   1.812535e-03   8.532080e-01
## BinePerPlantNi          9.974636e-37   3.171809e-16   1.164397e-09
## BinePerPlantP           3.023683e-11   2.268712e-17   1.518255e-11
## BinePerPlantSe          1.595773e-12   1.190568e-16   6.928220e-05
## BinePerPLantZn          4.349972e-10   1.589629e-03   6.546119e-08
## SeedPerPlantAl          4.329040e-08   7.742116e-06   2.544365e-02
## SeedPerPlantB           2.791538e-08   1.595214e-06   3.320518e-03
## SeedPerPlantCa          2.757584e-04   1.667368e-02   8.667824e-01
## SeedPerPlantCo          8.487134e-06   3.981097e-04   1.445559e-01
## SeedPerPlantCu          1.635914e-03   1.141606e-03   4.596052e-01
## SeedPerPlantFe          8.403552e-05   9.575808e-04   1.762043e-01
## SeedPerPlantK           1.032479e-06   7.926915e-05   4.206394e-02
## SeedPerPlantMg          7.581395e-06   1.269987e-04   2.037698e-01
## SeedPerPlantMn          2.030425e-06   3.665945e-03   2.244946e-01
## SeedPerPlantMo          3.160417e-02   8.192473e-05   6.867713e-01
## SeedPerPlantNi          3.768967e-03   2.120457e-03   5.084275e-02
## SeedPerPlantP           7.567409e-03   5.116440e-03   9.190391e-01
## SeedPerPlantS           1.188052e-05   7.167729e-05   1.561416e-01
## SeedPerPlantZn          2.068094e-07   1.963435e-04   7.244114e-02
## BineSeedPerPlantAl      4.329040e-08   7.742116e-06   2.544365e-02
## BineSeedPerPlantB       2.273803e-22   3.564542e-09   5.891319e-08
## BineSeedPerPlantCa      2.128458e-07   5.900671e-04   2.628993e-02
## BineSeedPerPlantCo      7.155135e-14   1.703706e-09   4.831131e-03
## BineSeedPerPlantCu      2.003600e-04   2.312385e-04   2.514697e-01
## BineSeedPerPlantFe      2.122799e-05   1.973048e-04   1.032120e-01
## BineSeedPerPlantK       7.469838e-14   1.303920e-11   7.287265e-47
## BineSeedPerPlantMg      4.942857e-24   3.627298e-16   1.024635e-08
## BineSeedPerPlantMo      1.502785e-08   9.181396e-04   6.562161e-02
## BineSeedPerPlantNi      5.467521e-13   1.278276e-02   1.036222e-04
## BineSeedPerPlantP       2.576205e-01   2.779229e-05   6.190605e-01
## BineSeedPerPlantS       1.019607e-03   9.537024e-04   5.756854e-01
## BineSeedPerPlantS.1     2.742161e-15   1.662257e-22   1.795715e-10
## BineSeedPerPlantZn      1.498783e-07   1.500002e-04   6.686021e-02
##                       BinePerPlantK BinePerPlantMg BinePerPlantMn
## BineM                  1.044413e-35   1.459958e-05   8.080681e-04
## SeedM                  2.001993e-09   6.042526e-02   1.043098e-01
## BineSeedM              7.995037e-18   2.243337e-03   1.293571e-02
## SeedN                  1.269280e-12   3.563403e-02   4.832108e-01
## SeedMOne               9.215216e-02   2.680638e-01   7.179964e-02
## NodPerPlant            3.968159e-01   1.057936e-01   3.799846e-01
## NodPerPlant.1          9.813650e-04   7.142975e-02   3.761023e-01
## Mic                    3.023157e-02   9.214682e-02   1.340045e-01
## Ves                    6.734791e-02   2.786900e-01   3.532243e-01
## Arb                    1.180019e-03   7.734752e-02   1.366323e-01
## pH                     8.885569e-01   4.669526e-05   4.492333e-10
## NitBine                6.145828e-10   1.550046e-01   1.025331e-01
## Nit15                  2.407793e-05   1.563160e-02   7.876810e-03
## NitPerPlant            1.511438e-11   1.743801e-10   1.895465e-04
## Nit15PerPlant          4.314384e-01   7.779348e-02   9.107984e-01
## NitSeed                7.949949e-02   7.652422e-01   9.984832e-01
## NitSeed15              8.786891e-06   4.100276e-02   4.205778e-02
## NitSeedPerPlant        1.234087e-06   9.909177e-02   2.101258e-01
## Nit15SeedPerPlant      2.978958e-03   4.611473e-03   1.849414e-02
## NitBineSeedPerPlant    9.072476e-08   2.944447e-02   1.147196e-01
## Nit15BineSeedPerPlant  4.961291e-03   1.905360e-03   4.335166e-02
## BineAl                 1.619725e-09   4.600431e-01   6.980366e-01
## BineB                  1.129855e-08   3.552355e-01   8.377413e-01
## BineCa                 1.596254e-03   7.475533e-01   7.615134e-01
## BineCo                 4.952649e-07   8.458095e-01   6.116592e-01
## BineCu                 3.249692e-10   5.029752e-03   4.978976e-04
## BineFe                 1.413458e-05   3.208027e-01   3.346335e-01
## BineK                  4.329651e-04   8.420480e-01   6.607409e-01
## BineMg                 2.605324e-09   7.622118e-01   4.010136e-01
## BineMn                 5.612154e-02   1.551796e-03   2.098278e-08
## BineMo                 4.244440e-02   9.847176e-03   1.345809e-05
## BineNi                 1.362720e-07   8.147250e-01   9.878114e-01
## BineP                  1.551091e-11   2.283735e-02   9.630236e-03
## BineS                  5.067461e-09   1.117543e-02   1.437553e-03
## BineZn                 1.413809e-04   1.927698e-01   5.314902e-02
## SeedAl                 1.853203e-03   4.755521e-02   1.991423e-01
## SeedB                  5.601398e-02   7.001082e-02   8.111234e-02
## SeedCo                 5.481606e-01   3.224006e-01   3.162733e-01
## SeedCu                 1.998262e-07   4.237753e-03   1.031793e-02
## SeedFe                 1.968090e-01   6.769362e-01   5.120937e-01
## SeedK                  8.908648e-01   7.389962e-01   2.765717e-01
## SeedMg                 1.605210e-01   8.786020e-01   7.216836e-01
## SeedMn                 2.597131e-01   1.168920e-01   3.887339e-03
## SeedMo                 3.254191e-02   3.779098e-05   1.608911e-07
## SeedNi                 9.014905e-02   1.319976e-01   6.794396e-01
## SeedP                  1.592404e-08   4.162113e-03   1.195794e-02
## SeedS                  6.008762e-01   6.921506e-01   9.454107e-01
## SeedZn                 6.965576e-01   7.353806e-02   7.353937e-03
## SoilAl                 1.294249e-01   1.536861e-01   8.600333e-05
## SoilB                  7.058249e-01   7.130168e-02   9.572030e-03
## SoilCa                 8.403825e-03   2.796240e-01   5.587548e-01
## SoilCo                 9.481221e-02   3.269246e-02   2.070226e-01
## SoilCu                 2.074349e-03   1.599270e-01   2.848893e-01
## SoilFe                 9.931948e-01   1.020739e-01   9.080759e-03
## SoilK                  2.269995e-04   3.069268e-02   2.806887e-02
## SoilMg                 1.602072e-04   2.877944e-02   2.558310e-02
## SoilMn                 3.369025e-02   1.364416e-06   4.658674e-07
## SoilMo                 2.043598e-02   4.079088e-01   3.436452e-03
## SoilNi                 1.306723e-01   7.179148e-02   4.175565e-01
## SoilP                  3.693693e-01   7.481545e-01   2.902692e-01
## SoilS                  5.406095e-02   9.803458e-02   9.460140e-01
## SoilZn                 1.165099e-04   1.431300e-02   2.571990e-02
## BinePerPlantAl         7.038206e-23   7.281951e-13   1.970775e-09
## BinePerPlantB          1.393088e-04   4.643152e-10   2.736790e-07
## BinePerPLantCa         1.075175e-11   2.336895e-06   1.158034e-03
## BinePerPlantCo         1.002425e-23   3.232218e-15   2.535686e-09
## BinePerPlantCu         2.485644e-16   1.094187e-04   1.234104e-01
## BinePerPlantFe         1.143098e-10   1.368399e-07   3.349157e-04
## BinePerPlantK          0.000000e+00   9.192107e-09   4.805723e-05
## BinePerPlantMg         9.192107e-09   0.000000e+00   5.916594e-21
## BinePerPlantMn         4.805723e-05   5.916594e-21   0.000000e+00
## BinePerPlantMo         2.302918e-01   1.416810e-01   2.324266e-04
## BinePerPlantNi         1.238387e-30   2.798444e-11   9.645527e-07
## BinePerPlantP          1.683267e-08   1.328325e-07   1.979371e-02
## BinePerPlantSe         4.863627e-14   1.419145e-04   1.326862e-01
## BinePerPLantZn         3.204405e-05   4.801962e-21   2.950038e-17
## SeedPerPlantAl         8.968386e-09   4.224216e-02   4.017398e-02
## SeedPerPlantB          1.140233e-09   1.167643e-02   1.285612e-02
## SeedPerPlantCa         3.757827e-03   7.823604e-02   3.515891e-02
## SeedPerPlantCo         7.259599e-04   7.491700e-02   4.697033e-02
## SeedPerPlantCu         4.724266e-03   5.962560e-01   6.816291e-01
## SeedPerPlantFe         3.581392e-04   9.346049e-02   1.036910e-01
## SeedPerPlantK          1.860016e-06   1.099550e-01   5.484516e-02
## SeedPerPlantMg         5.027180e-05   1.782150e-01   1.550585e-01
## SeedPerPlantMn         2.145913e-04   7.533971e-03   6.068225e-04
## SeedPerPlantMo         1.432013e-02   7.426298e-02   1.606088e-02
## SeedPerPlantNi         8.520361e-03   9.429837e-01   5.798552e-01
## SeedPerPlantP          3.785658e-02   7.801337e-01   8.489490e-01
## SeedPerPlantS          3.423941e-05   3.178551e-01   2.761027e-01
## SeedPerPlantZn         2.033528e-06   1.984573e-03   8.057889e-04
## BineSeedPerPlantAl     8.968386e-09   4.224216e-02   4.017398e-02
## BineSeedPerPlantB      1.001884e-23   1.714064e-12   2.935642e-09
## BineSeedPerPlantCa     4.815333e-05   2.672530e-09   3.606781e-07
## BineSeedPerPlantCo     1.306487e-11   3.332153e-06   1.145340e-03
## BineSeedPerPlantCu     8.815679e-04   3.215396e-01   4.265509e-01
## BineSeedPerPlantFe     9.616594e-05   6.427490e-02   9.376345e-02
## BineSeedPerPlantK      3.978503e-13   1.444495e-07   1.849309e-04
## BineSeedPerPlantMg     8.406346e-43   1.985400e-07   1.242650e-04
## BineSeedPerPlantMo     1.402506e-05   1.690791e-04   1.170771e-05
## BineSeedPerPlantNi     5.949431e-07   7.450606e-20   3.313433e-41
## BineSeedPerPlantP      3.829003e-02   1.531815e-01   1.066050e-03
## BineSeedPerPlantS      7.484684e-03   4.468036e-01   5.656707e-01
## BineSeedPerPlantS.1    2.191824e-11   7.488919e-07   1.582239e-02
## BineSeedPerPlantZn     1.486716e-06   1.801935e-03   8.134682e-04
##                       BinePerPlantMo BinePerPlantNi BinePerPlantP
## BineM                   3.718677e-01   3.768417e-26  2.037334e-05
## SeedM                   1.497829e-01   4.678623e-12  4.161894e-02
## BineSeedM               2.027241e-01   8.929399e-20  1.750313e-03
## SeedN                   1.237158e-02   8.261275e-09  2.167122e-03
## SeedMOne                3.915633e-01   6.608659e-04  8.921779e-01
## NodPerPlant             4.044616e-02   9.656525e-01  1.393547e-04
## NodPerPlant.1           2.342172e-01   8.642781e-03  9.983344e-06
## Mic                     1.171120e-01   4.104410e-02  8.079181e-01
## Ves                     6.280195e-02   5.533594e-02  8.282992e-02
## Arb                     3.929679e-01   2.092443e-03  8.434370e-01
## pH                      1.714965e-12   8.625682e-01  3.153363e-01
## NitBine                 4.232026e-01   7.651411e-06  1.663900e-01
## Nit15                   1.554352e-02   2.177260e-06  1.882059e-01
## NitPerPlant             1.469690e-02   1.099452e-15  1.722796e-08
## Nit15PerPlant           3.264213e-07   3.337945e-01  1.414057e-02
## NitSeed                 6.529880e-01   7.254336e-01  5.347190e-01
## NitSeed15               8.706802e-02   1.806971e-08  5.717214e-01
## NitSeedPerPlant         1.703942e-01   1.565519e-09  7.635348e-02
## Nit15SeedPerPlant       1.285461e-01   6.515642e-05  9.402755e-03
## NitBineSeedPerPlant     1.195297e-01   2.616263e-11  2.507425e-02
## Nit15BineSeedPerPlant   1.554713e-03   1.866474e-04  1.456656e-03
## BineAl                  1.152154e-01   6.513732e-06  2.373927e-03
## BineB                   9.464190e-01   9.631048e-05  2.522959e-02
## BineCa                  1.517234e-02   2.553170e-01  3.306648e-01
## BineCo                  1.444213e-01   7.847432e-04  9.630546e-01
## BineCu                  3.588650e-01   2.181467e-08  8.868692e-01
## BineFe                  3.758711e-02   1.466224e-05  8.064501e-01
## BineK                   6.771054e-01   2.444221e-04  2.831022e-01
## BineMg                  7.371148e-03   3.495208e-06  2.011931e-01
## BineMn                  9.657714e-07   4.247166e-01  1.739178e-01
## BineMo                  1.171419e-19   1.479292e-01  5.292378e-01
## BineNi                  9.000185e-01   1.378944e-03  4.994386e-01
## BineP                   6.318741e-01   9.907523e-10  9.515273e-01
## BineS                   5.947414e-03   1.330832e-05  4.260031e-01
## BineZn                  2.812171e-04   9.514172e-04  7.952981e-01
## SeedAl                  1.814552e-03   8.967233e-06  1.033247e-01
## SeedB                   3.077050e-01   2.047872e-01  4.490074e-02
## SeedCo                  4.313901e-01   7.590989e-01  2.117519e-02
## SeedCu                  6.587809e-01   2.015783e-06  1.914766e-01
## SeedFe                  5.954003e-01   5.769711e-01  6.443906e-01
## SeedK                   6.281023e-03   9.421128e-01  3.634762e-01
## SeedMg                  1.875886e-01   6.463217e-01  7.003068e-01
## SeedMn                  2.576566e-01   9.724591e-01  9.884338e-01
## SeedMo                  8.027052e-02   1.215473e-02  4.915169e-01
## SeedNi                  1.728282e-02   8.164806e-02  8.149028e-01
## SeedP                   8.615642e-01   2.531284e-06  1.754148e-01
## SeedS                   4.384726e-01   6.542600e-01  5.442269e-01
## SeedZn                  3.854585e-01   9.933017e-01  8.859570e-01
## SoilAl                  2.068071e-09   2.340990e-01  8.843085e-03
## SoilB                   4.422358e-02   7.636116e-01  5.724369e-01
## SoilCa                  6.807892e-01   2.138355e-01  7.123758e-02
## SoilCo                  3.417335e-02   3.859753e-01  7.084629e-03
## SoilCu                  7.295500e-02   4.575508e-02  2.041945e-02
## SoilFe                  1.244282e-04   6.382395e-01  5.776900e-01
## SoilK                   4.403148e-02   1.982082e-06  3.857660e-01
## SoilMg                  5.453954e-02   1.532883e-06  3.839844e-01
## SoilMn                  8.332712e-04   4.842945e-02  1.454362e-02
## SoilMo                  1.901400e-02   2.038690e-01  4.506685e-03
## SoilNi                  7.552987e-02   3.903482e-01  6.225310e-03
## SoilP                   9.330588e-01   9.242369e-01  2.035906e-04
## SoilS                   7.262113e-01   1.634027e-01  1.004078e-02
## SoilZn                  6.838613e-01   1.267188e-03  4.852949e-01
## BinePerPlantAl          6.772505e-01   4.980637e-27  3.189770e-05
## BinePerPlantB           4.711589e-02   2.784528e-07  1.014627e-03
## BinePerPLantCa          9.176391e-04   1.087143e-19  4.417827e-05
## BinePerPlantCo          8.785327e-01   9.974636e-37  3.023683e-11
## BinePerPlantCu          1.812535e-03   3.171809e-16  2.268712e-17
## BinePerPlantFe          8.532080e-01   1.164397e-09  1.518255e-11
## BinePerPlantK           2.302918e-01   1.238387e-30  1.683267e-08
## BinePerPlantMg          1.416810e-01   2.798444e-11  1.328325e-07
## BinePerPlantMn          2.324266e-04   9.645527e-07  1.979371e-02
## BinePerPlantMo          0.000000e+00   2.295755e-01  3.552796e-02
## BinePerPlantNi          2.295755e-01   0.000000e+00  3.911307e-09
## BinePerPlantP           3.552796e-02   3.911307e-09  0.000000e+00
## BinePerPlantSe          6.445703e-07   1.509532e-16  4.659120e-09
## BinePerPLantZn          8.988246e-03   6.914843e-06  5.048858e-07
## SeedPerPlantAl          8.171657e-01   9.737315e-10  5.428841e-02
## SeedPerPlantB           6.345513e-01   5.290121e-10  9.820034e-03
## SeedPerPlantCa          3.520980e-01   3.635693e-05  2.383422e-01
## SeedPerPlantCo          8.204301e-01   4.595035e-06  1.682847e-02
## SeedPerPlantCu          6.262753e-02   8.122215e-05  1.697253e-01
## SeedPerPlantFe          3.605086e-01   3.837394e-06  1.627055e-01
## SeedPerPlantK           9.916059e-01   4.998690e-08  7.001566e-02
## SeedPerPlantMg          5.000741e-01   2.103676e-07  7.497938e-02
## SeedPerPlantMn          8.084840e-01   4.696267e-07  1.463003e-01
## SeedPerPlantMo          2.183739e-02   5.620897e-03  1.245014e-01
## SeedPerPlantNi          6.861447e-01   1.701780e-03  9.512780e-02
## SeedPerPlantP           5.225486e-02   7.891693e-04  2.352965e-01
## SeedPerPlantS           4.978146e-01   3.191026e-07  9.671270e-02
## SeedPerPlantZn          4.462964e-01   1.306700e-08  4.675236e-02
## BineSeedPerPlantAl      8.171657e-01   9.737315e-10  5.428841e-02
## BineSeedPerPlantB       6.689227e-01   3.590480e-28  3.083823e-05
## BineSeedPerPlantCa      4.774588e-02   2.136171e-08  1.357291e-03
## BineSeedPerPlantCo      1.405967e-03   8.917950e-20  4.428150e-05
## BineSeedPerPlantCu      7.011558e-02   6.665482e-06  7.695752e-02
## BineSeedPerPlantFe      2.871445e-01   6.942629e-07  8.199537e-02
## BineSeedPerPlantK       8.606412e-01   2.091959e-12  2.118867e-11
## BineSeedPerPlantMg      2.323330e-01   4.642431e-34  1.471302e-07
## BineSeedPerPlantMo      9.853719e-01   5.501489e-09  3.828465e-02
## BineSeedPerPlantNi      1.046113e-03   1.099958e-09  4.853696e-03
## BineSeedPerPlantP       1.382416e-28   2.489262e-02  8.681941e-03
## BineSeedPerPlantS       4.871050e-02   6.156684e-05  1.095302e-01
## BineSeedPerPlantS.1     3.803741e-02   1.293593e-13  6.477525e-32
## BineSeedPerPlantZn      4.162545e-01   8.595082e-09  4.116353e-02
##                       BinePerPlantSe BinePerPLantZn SeedPerPlantAl
## BineM                   3.222530e-12   4.430851e-03   1.232852e-12
## SeedM                   7.732814e-09   8.516158e-01   6.229793e-23
## BineSeedM               1.088847e-11   1.692758e-01   1.471661e-21
## SeedN                   4.630485e-09   1.958656e-01   8.455587e-06
## SeedMOne                3.459950e-03   5.512639e-01   6.421513e-08
## NodPerPlant             6.624212e-01   2.046934e-03   7.804224e-01
## NodPerPlant.1           9.758253e-02   2.342378e-02   1.302129e-02
## Mic                     6.500404e-01   8.498579e-02   4.875941e-01
## Ves                     1.555519e-02   8.156549e-01   1.670009e-02
## Arb                     1.018734e-01   1.254300e-01   8.036496e-02
## pH                      1.247495e-03   7.018069e-06   3.621123e-01
## NitBine                 1.214072e-02   2.073057e-01   3.811278e-06
## Nit15                   1.009832e-03   1.267157e-01   8.944122e-09
## NitPerPlant             1.474841e-15   6.204478e-05   3.056529e-04
## Nit15PerPlant           1.853065e-02   2.371280e-01   8.414823e-02
## NitSeed                 5.867733e-01   4.435974e-01   8.779574e-01
## NitSeed15               1.249768e-07   9.619941e-01   3.770000e-08
## NitSeedPerPlant         1.847547e-07   8.761227e-01   5.285547e-18
## Nit15SeedPerPlant       7.487694e-04   7.399232e-02   1.215700e-06
## NitBineSeedPerPlant     6.098860e-09   7.845970e-01   9.711025e-18
## Nit15BineSeedPerPlant   1.310825e-04   4.860303e-02   1.390530e-03
## BineAl                  1.229626e-05   7.816089e-01   1.315577e-06
## BineB                   3.161693e-03   3.604685e-01   8.872012e-05
## BineCa                  7.756091e-01   1.548045e-01   2.246157e-01
## BineCo                  1.948140e-03   1.597136e-01   3.371025e-05
## BineCu                  1.895213e-03   2.146656e-01   1.423231e-07
## BineFe                  4.337926e-06   4.021786e-01   1.755172e-07
## BineK                   2.357369e-03   1.472563e-01   1.411365e-08
## BineMg                  4.211413e-07   2.455198e-01   1.748233e-08
## BineMn                  9.496733e-04   1.726206e-04   5.405082e-02
## BineMo                  2.779367e-02   1.348931e-03   1.267545e-01
## BineNi                  1.129314e-02   9.756335e-01   7.279537e-05
## BineP                   9.041094e-06   4.544159e-01   1.513780e-09
## BineS                   3.456969e-01   3.627326e-02   4.560130e-05
## BineZn                  2.123926e-05   1.526182e-04   2.887799e-06
## SeedAl                  9.617489e-07   8.675106e-01   3.498671e-02
## SeedB                   7.393246e-01   4.214871e-02   1.111367e-01
## SeedCo                  8.914745e-01   2.337580e-01   2.805453e-01
## SeedCu                  2.619016e-04   3.967638e-02   9.368836e-04
## SeedFe                  3.037540e-01   7.379754e-01   9.344087e-01
## SeedK                   9.045076e-02   4.289889e-01   4.951417e-02
## SeedMg                  2.069541e-01   4.457655e-01   2.367152e-01
## SeedMn                  3.831271e-01   5.895266e-02   3.901326e-01
## SeedMo                  7.593407e-01   6.514953e-03   8.819279e-01
## SeedNi                  1.472818e-04   3.438465e-01   9.816069e-01
## SeedP                   4.854456e-04   2.862759e-02   3.192716e-03
## SeedS                   9.869147e-01   5.023250e-01   6.453515e-03
## SeedZn                  4.445724e-01   6.193932e-02   7.432806e-01
## SoilAl                  4.522679e-04   8.120228e-03   3.292979e-01
## SoilB                   2.504311e-01   8.516189e-03   6.923108e-01
## SoilCa                  8.573078e-01   4.380685e-01   9.648664e-01
## SoilCo                  7.923562e-01   7.917838e-04   8.207298e-01
## SoilCu                  8.764964e-01   1.070195e-01   3.791767e-02
## SoilFe                  2.478921e-02   1.960072e-02   1.497751e-01
## SoilK                   5.813851e-06   9.274773e-01   9.636181e-07
## SoilMg                  5.359113e-06   9.108432e-01   7.110604e-07
## SoilMn                  7.396460e-01   2.583212e-06   5.045258e-01
## SoilMo                  5.100358e-02   4.141785e-02   3.289905e-01
## SoilNi                  7.386057e-01   8.995900e-03   7.440864e-01
## SoilP                   9.673562e-01   1.194194e-01   6.898412e-01
## SoilS                   3.706652e-01   1.897086e-01   4.768467e-01
## SoilZn                  5.595067e-02   1.659586e-01   3.911058e-02
## BinePerPlantAl          2.758901e-11   1.229090e-06   4.479583e-07
## BinePerPlantB           2.571017e-06   7.457793e-05   8.021981e-02
## BinePerPLantCa          5.635081e-19   3.364959e-02   2.072193e-08
## BinePerPlantCo          1.595773e-12   4.349972e-10   4.329040e-08
## BinePerPlantCu          1.190568e-16   1.589629e-03   7.742116e-06
## BinePerPlantFe          6.928220e-05   6.546119e-08   2.544365e-02
## BinePerPlantK           4.863627e-14   3.204405e-05   8.968386e-09
## BinePerPlantMg          1.419145e-04   4.801962e-21   4.224216e-02
## BinePerPlantMn          1.326862e-01   2.950038e-17   4.017398e-02
## BinePerPlantMo          6.445703e-07   8.988246e-03   8.171657e-01
## BinePerPlantNi          1.509532e-16   6.914843e-06   9.737315e-10
## BinePerPlantP           4.659120e-09   5.048858e-07   5.428841e-02
## BinePerPlantSe          0.000000e+00   3.763034e-02   4.847297e-06
## BinePerPLantZn          3.763034e-02   0.000000e+00   3.745883e-01
## SeedPerPlantAl          4.847297e-06   3.745883e-01   0.000000e+00
## SeedPerPlantB           3.019881e-05   1.470430e-01   1.352926e-17
## SeedPerPlantCa          6.842326e-04   9.070349e-01   1.989467e-13
## SeedPerPlantCo          4.573835e-04   4.788742e-01   5.838217e-13
## SeedPerPlantCu          5.321086e-05   3.883932e-01   1.381635e-10
## SeedPerPlantFe          1.889814e-04   9.548085e-01   8.438447e-12
## SeedPerPlantK           1.523196e-04   6.240051e-01   2.681284e-22
## SeedPerPlantMg          3.810936e-05   8.380338e-01   1.659944e-17
## SeedPerPlantMn          3.881847e-04   1.473126e-01   1.023471e-13
## SeedPerPlantMo          4.345213e-04   1.789448e-02   3.297607e-10
## SeedPerPlantNi          1.384643e-01   5.970455e-01   8.998209e-10
## SeedPerPlantP           2.857683e-04   2.792385e-01   4.047177e-09
## SeedPerPlantS           4.044396e-05   7.817315e-01   4.207888e-19
## SeedPerPlantZn          1.856309e-05   1.146297e-01   4.732858e-14
## BineSeedPerPlantAl      4.847297e-06   3.745883e-01   0.000000e+00
## BineSeedPerPlantB       2.090607e-11   1.932687e-06   1.051798e-07
## BineSeedPerPlantCa      5.410268e-07   3.783591e-04   4.525985e-03
## BineSeedPerPlantCo      1.720355e-18   3.690096e-02   4.250148e-09
## BineSeedPerPlantCu      8.715673e-06   6.729713e-01   1.381044e-11
## BineSeedPerPlantFe      4.741188e-05   9.064783e-01   2.442556e-12
## BineSeedPerPlantK       7.095129e-06   3.268427e-07   5.886389e-04
## BineSeedPerPlantMg      1.406951e-14   5.186540e-04   8.597181e-13
## BineSeedPerPlantMo      8.415951e-05   1.716543e-02   2.563639e-13
## BineSeedPerPlantNi      1.807956e-02   2.720050e-15   4.891145e-04
## BineSeedPerPlantP       5.869952e-08   7.128445e-03   3.534788e-02
## BineSeedPerPlantS       3.474069e-05   5.024936e-01   2.950835e-10
## BineSeedPerPlantS.1     5.071793e-12   2.479607e-05   6.013653e-05
## BineSeedPerPlantZn      1.243600e-05   1.110610e-01   3.836152e-14
##                       SeedPerPlantB SeedPerPlantCa SeedPerPlantCo
## BineM                  1.103012e-11   3.328553e-04   4.799386e-05
## SeedM                  2.749380e-17   2.532590e-14   1.246118e-13
## BineSeedM              1.904395e-17   1.657473e-09   4.852072e-10
## SeedN                  7.702688e-05   2.098842e-01   1.044915e-01
## SeedMOne               3.951793e-07   1.706851e-18   4.601521e-13
## NodPerPlant            9.537685e-01   3.856005e-01   6.814264e-01
## NodPerPlant.1          1.588413e-02   2.162035e-01   2.031137e-02
## Mic                    6.938650e-01   1.554716e-01   1.296833e-01
## Ves                    1.311526e-02   9.898726e-04   5.621777e-04
## Arb                    1.427942e-01   5.388973e-01   6.403515e-01
## pH                     8.663454e-01   6.632340e-01   5.323772e-01
## NitBine                1.365039e-05   2.778268e-01   4.844783e-02
## Nit15                  6.691295e-06   1.005668e-04   1.688565e-07
## NitPerPlant            2.950598e-04   1.772726e-03   9.978854e-03
## Nit15PerPlant          3.905614e-01   5.014112e-01   3.527043e-02
## NitSeed                9.497413e-01   5.382768e-02   2.811052e-01
## NitSeed15              8.609352e-07   4.510612e-07   1.096555e-05
## NitSeedPerPlant        3.001075e-14   3.772686e-15   5.673756e-13
## Nit15SeedPerPlant      4.091336e-07   2.521256e-11   7.780988e-08
## NitBineSeedPerPlant    2.883431e-14   9.617489e-15   1.987831e-12
## Nit15BineSeedPerPlant  1.919708e-04   8.471602e-07   6.834309e-04
## BineAl                 2.159629e-05   1.221195e-01   1.380824e-02
## BineB                  1.301854e-03   8.541959e-01   3.233274e-01
## BineCa                 2.637029e-01   1.871081e-02   2.182072e-01
## BineCo                 3.278500e-04   2.261788e-01   3.804030e-01
## BineCu                 2.427742e-06   5.854044e-03   2.348269e-02
## BineFe                 2.817619e-05   6.520235e-05   4.250167e-03
## BineK                  5.027531e-05   5.704575e-04   2.073124e-03
## BineMg                 3.374012e-06   2.094335e-02   1.304244e-02
## BineMn                 2.303427e-01   9.453146e-01   7.056061e-01
## BineMo                 1.156621e-01   5.854808e-01   6.891227e-01
## BineNi                 7.749076e-04   7.268934e-01   5.568114e-01
## BineP                  1.710898e-07   1.808089e-03   8.933232e-03
## BineS                  1.824005e-05   3.277028e-01   1.803151e-01
## BineZn                 1.155939e-04   1.204511e-03   9.178538e-03
## SeedAl                 1.932169e-03   3.203436e-04   9.347222e-04
## SeedB                  2.683283e-06   4.619590e-02   2.160444e-02
## SeedCo                 5.200071e-02   3.476661e-04   9.388710e-08
## SeedCu                 2.011903e-02   6.866156e-01   7.223744e-01
## SeedFe                 2.884641e-01   2.550901e-02   1.675162e-02
## SeedK                  1.407920e-03   9.897997e-04   8.850835e-07
## SeedMg                 4.984999e-02   2.574215e-05   1.240970e-07
## SeedMn                 4.233107e-02   8.968893e-05   5.368768e-05
## SeedMo                 8.388721e-01   9.283795e-01   2.366003e-01
## SeedNi                 4.166724e-01   3.212742e-01   9.472603e-02
## SeedP                  3.567489e-02   7.814507e-01   4.392068e-01
## SeedS                  1.027631e-04   6.172342e-08   1.399013e-12
## SeedZn                 8.709963e-02   1.497571e-02   7.110754e-03
## SoilAl                 5.120519e-01   4.643571e-01   5.040811e-01
## SoilB                  3.832579e-01   2.097612e-01   1.942871e-01
## SoilCa                 2.270939e-01   1.761021e-01   2.064588e-01
## SoilCo                 8.058063e-01   7.748473e-02   1.677927e-01
## SoilCu                 3.621310e-02   9.503707e-01   4.177084e-01
## SoilFe                 3.438319e-01   3.012578e-02   5.896714e-02
## SoilK                  8.570911e-07   8.420827e-09   3.789033e-06
## SoilMg                 4.292263e-07   5.454363e-09   2.461652e-06
## SoilMn                 3.651582e-01   4.947703e-01   6.955697e-01
## SoilMo                 2.636407e-01   9.344482e-01   7.523767e-01
## SoilNi                 9.956637e-01   1.876999e-01   2.984349e-01
## SoilP                  7.494538e-01   8.535888e-02   3.920032e-01
## SoilS                  2.306803e-01   9.217600e-01   6.882094e-01
## SoilZn                 2.120669e-02   5.071529e-01   7.980520e-01
## BinePerPlantAl         2.946060e-07   8.860069e-04   1.975162e-03
## BinePerPlantB          1.173270e-02   1.227337e-03   1.787074e-02
## BinePerPLantCa         4.925023e-08   8.665575e-09   4.405974e-07
## BinePerPlantCo         2.791538e-08   2.757584e-04   8.487134e-06
## BinePerPlantCu         1.595214e-06   1.667368e-02   3.981097e-04
## BinePerPlantFe         3.320518e-03   8.667824e-01   1.445559e-01
## BinePerPlantK          1.140233e-09   3.757827e-03   7.259599e-04
## BinePerPlantMg         1.167643e-02   7.823604e-02   7.491700e-02
## BinePerPlantMn         1.285612e-02   3.515891e-02   4.697033e-02
## BinePerPlantMo         6.345513e-01   3.520980e-01   8.204301e-01
## BinePerPlantNi         5.290121e-10   3.635693e-05   4.595035e-06
## BinePerPlantP          9.820034e-03   2.383422e-01   1.682847e-02
## BinePerPlantSe         3.019881e-05   6.842326e-04   4.573835e-04
## BinePerPLantZn         1.470430e-01   9.070349e-01   4.788742e-01
## SeedPerPlantAl         1.352926e-17   1.989467e-13   5.838217e-13
## SeedPerPlantB          0.000000e+00   2.340365e-13   4.892865e-14
## SeedPerPlantCa         2.340365e-13   0.000000e+00   3.575488e-22
## SeedPerPlantCo         4.892865e-14   3.575488e-22   0.000000e+00
## SeedPerPlantCu         3.965074e-11   8.971148e-19   1.820071e-21
## SeedPerPlantFe         2.505463e-13   2.793447e-16   1.318417e-16
## SeedPerPlantK          2.444122e-23   1.432168e-18   1.260344e-25
## SeedPerPlantMg         5.337706e-16   4.632644e-22   5.112021e-29
## SeedPerPlantMn         1.027896e-16   5.877620e-26   4.222371e-24
## SeedPerPlantMo         1.172317e-08   3.160957e-08   2.731762e-11
## SeedPerPlantNi         8.072884e-11   2.522528e-09   1.973069e-13
## SeedPerPlantP          1.834259e-09   1.691491e-19   1.049513e-20
## SeedPerPlantS          4.645665e-19   6.524748e-19   9.267339e-25
## SeedPerPlantZn         4.176466e-18   5.165325e-19   6.531197e-19
## BineSeedPerPlantAl     1.352926e-17   1.989467e-13   5.838217e-13
## BineSeedPerPlantB      4.038145e-08   3.624503e-04   8.249328e-04
## BineSeedPerPlantCa     3.361840e-04   2.139645e-06   2.622435e-04
## BineSeedPerPlantCo     9.618536e-09   9.344949e-10   4.271042e-08
## BineSeedPerPlantCu     3.396918e-12   2.528596e-19   7.741649e-23
## BineSeedPerPlantFe     5.137973e-14   4.487135e-16   6.486881e-17
## BineSeedPerPlantK      2.915108e-05   1.828827e-01   7.165404e-03
## BineSeedPerPlantMg     9.420772e-14   1.541450e-05   8.873238e-07
## BineSeedPerPlantMo     1.428006e-16   4.584465e-23   1.031771e-21
## BineSeedPerPlantNi     9.703198e-05   6.158406e-04   5.244243e-04
## BineSeedPerPlantP      1.484470e-02   5.377138e-03   1.865161e-02
## BineSeedPerPlantS      1.167357e-10   2.160543e-20   4.210183e-22
## BineSeedPerPlantS.1    2.511611e-06   1.159623e-03   3.087553e-06
## BineSeedPerPlantZn     3.624437e-18   5.530222e-19   6.773402e-19
##                       SeedPerPlantCu SeedPerPlantFe SeedPerPlantK
## BineM                   2.898171e-04   1.805725e-05  2.359996e-09
## SeedM                   5.336645e-15   3.277178e-14  1.496497e-23
## BineSeedM               8.302264e-10   1.153970e-10  2.905169e-18
## SeedN                   1.105541e-02   5.642754e-03  7.859006e-04
## SeedMOne                1.668730e-12   6.222273e-11  8.334045e-11
## NodPerPlant             6.114631e-02   6.789916e-02  7.902136e-01
## NodPerPlant.1           5.050353e-01   7.876998e-01  1.240784e-02
## Mic                     3.913024e-01   9.361672e-01  8.779230e-01
## Ves                     5.102076e-03   1.609419e-02  9.797712e-03
## Arb                     9.529130e-01   3.855198e-01  3.399254e-01
## pH                      1.033209e-01   7.211243e-01  5.408915e-01
## NitBine                 1.477427e-01   4.965137e-02  5.153576e-05
## Nit15                   5.532680e-07   8.239059e-07  7.286262e-10
## NitPerPlant             4.635166e-03   1.725753e-03  5.785351e-03
## Nit15PerPlant           1.204515e-01   1.631711e-01  1.206994e-02
## NitSeed                 3.362014e-02   1.027955e-01  5.637507e-01
## NitSeed15               6.657836e-10   1.662289e-08  2.846611e-08
## NitSeedPerPlant         1.865400e-16   2.112600e-14  6.905592e-20
## Nit15SeedPerPlant       4.931292e-06   7.659851e-08  7.745784e-07
## NitBineSeedPerPlant     1.145857e-15   4.504178e-14  1.636265e-18
## Nit15BineSeedPerPlant   2.176877e-03   2.097392e-04  3.303384e-03
## BineAl                  1.921210e-02   2.310796e-02  2.307100e-05
## BineB                   5.093063e-01   4.318822e-01  2.731352e-03
## BineCa                  4.218341e-02   1.417057e-01  5.890199e-01
## BineCo                  7.496789e-02   6.731975e-02  1.308714e-03
## BineCu                  1.753170e-02   1.084351e-03  7.791247e-06
## BineFe                  2.447516e-04   1.276789e-04  1.717417e-05
## BineK                   1.015256e-04   1.676622e-04  3.607064e-07
## BineMg                  1.007122e-03   3.660273e-03  3.130542e-06
## BineMn                  1.176802e-01   6.481900e-01  1.619542e-01
## BineMo                  3.125694e-01   7.522639e-01  1.374909e-01
## BineNi                  4.547411e-01   3.234629e-01  3.811185e-03
## BineP                   1.182868e-03   8.430072e-05  8.196161e-07
## BineS                   5.307614e-01   8.681171e-02  4.384029e-04
## BineZn                  3.154685e-05   1.936121e-04  1.969321e-05
## SeedAl                  2.868699e-06   1.964780e-05  6.805752e-04
## SeedB                   2.900512e-01   8.126866e-02  2.187539e-02
## SeedCo                  1.013837e-03   9.816012e-03  5.359048e-03
## SeedCu                  3.164207e-01   4.828786e-01  2.072440e-01
## SeedFe                  2.003533e-02   2.823315e-06  2.704253e-01
## SeedK                   1.029267e-03   1.243187e-02  5.464101e-05
## SeedMg                  5.090230e-05   8.354641e-03  1.435585e-03
## SeedMn                  5.970978e-03   2.838557e-03  2.634276e-02
## SeedMo                  3.631615e-01   4.661118e-01  6.381415e-01
## SeedNi                  7.877004e-01   4.928002e-01  3.153581e-01
## SeedP                   2.113912e-01   5.622736e-01  3.106554e-01
## SeedS                   5.429793e-10   2.562355e-05  1.093505e-07
## SeedZn                  4.948459e-02   5.977412e-03  1.270693e-01
## SoilAl                  1.228372e-01   5.550779e-01  4.870793e-01
## SoilB                   5.007819e-02   1.986001e-01  3.988896e-01
## SoilCa                  1.131073e-01   2.761252e-01  8.692733e-01
## SoilCo                  2.149497e-02   1.705510e-02  4.317672e-01
## SoilCu                  8.117773e-01   7.419339e-01  5.845060e-02
## SoilFe                  1.589171e-02   1.220919e-01  1.447306e-01
## SoilK                   1.540637e-07   4.853850e-07  3.415175e-07
## SoilMg                  1.121845e-07   2.842064e-07  2.114142e-07
## SoilMn                  3.281002e-01   4.681631e-01  7.615711e-01
## SoilMo                  4.793100e-01   8.052530e-01  3.988761e-01
## SoilNi                  5.409429e-02   4.391683e-02  5.898725e-01
## SoilP                   5.769875e-02   2.508137e-02  4.200782e-01
## SoilS                   9.045372e-01   9.408590e-01  5.286573e-01
## SoilZn                  9.776509e-01   8.094591e-01  2.786794e-01
## BinePerPlantAl          6.580698e-03   4.712013e-04  4.228003e-05
## BinePerPlantB           1.197438e-02   2.891430e-03  8.612466e-02
## BinePerPLantCa          4.141588e-08   2.565194e-08  1.797612e-07
## BinePerPlantCo          1.635914e-03   8.403552e-05  1.032479e-06
## BinePerPlantCu          1.141606e-03   9.575808e-04  7.926915e-05
## BinePerPlantFe          4.596052e-01   1.762043e-01  4.206394e-02
## BinePerPlantK           4.724266e-03   3.581392e-04  1.860016e-06
## BinePerPlantMg          5.962560e-01   9.346049e-02  1.099550e-01
## BinePerPlantMn          6.816291e-01   1.036910e-01  5.484516e-02
## BinePerPlantMo          6.262753e-02   3.605086e-01  9.916059e-01
## BinePerPlantNi          8.122215e-05   3.837394e-06  4.998690e-08
## BinePerPlantP           1.697253e-01   1.627055e-01  7.001566e-02
## BinePerPlantSe          5.321086e-05   1.889814e-04  1.523196e-04
## BinePerPLantZn          3.883932e-01   9.548085e-01  6.240051e-01
## SeedPerPlantAl          1.381635e-10   8.438447e-12  2.681284e-22
## SeedPerPlantB           3.965074e-11   2.505463e-13  2.444122e-23
## SeedPerPlantCa          8.971148e-19   2.793447e-16  1.432168e-18
## SeedPerPlantCo          1.820071e-21   1.318417e-16  1.260344e-25
## SeedPerPlantCu          0.000000e+00   2.800641e-17  3.251400e-20
## SeedPerPlantFe          2.800641e-17   0.000000e+00  1.450581e-16
## SeedPerPlantK           3.251400e-20   1.450581e-16  0.000000e+00
## SeedPerPlantMg          1.568652e-24   2.607257e-16  6.689588e-32
## SeedPerPlantMn          2.243679e-17   2.308083e-18  4.024041e-22
## SeedPerPlantMo          1.206811e-12   3.632886e-07  2.312741e-13
## SeedPerPlantNi          6.576984e-09   1.588546e-10  5.583484e-14
## SeedPerPlantP           8.519636e-46   9.768356e-15  4.293046e-17
## SeedPerPlantS           9.597699e-25   9.981701e-17  6.843926e-40
## SeedPerPlantZn          4.748199e-16   5.730464e-20  6.718785e-21
## BineSeedPerPlantAl      1.381635e-10   8.438447e-12  2.681284e-22
## BineSeedPerPlantB       3.236330e-03   1.869152e-04  1.108410e-05
## BineSeedPerPlantCa      1.909102e-04   3.551437e-05  3.251588e-03
## BineSeedPerPlantCo      5.202362e-09   4.011118e-09  2.212185e-08
## BineSeedPerPlantCu      1.257162e-69   5.360518e-18  7.781144e-22
## BineSeedPerPlantFe      1.887364e-17   1.762440e-77  4.719646e-17
## BineSeedPerPlantK       5.592370e-02   1.430288e-02  6.839750e-04
## BineSeedPerPlantMg      1.745111e-05   1.340628e-06  1.357387e-10
## BineSeedPerPlantMo      7.934325e-15   5.750243e-17  7.397322e-20
## BineSeedPerPlantNi      7.853550e-02   5.067562e-03  4.956039e-04
## BineSeedPerPlantP       1.855496e-04   4.109274e-03  3.231362e-02
## BineSeedPerPlantS       1.627411e-48   9.647633e-16  8.167548e-19
## BineSeedPerPlantS.1     3.263286e-04   7.084980e-04  2.348773e-05
## BineSeedPerPlantZn      4.214653e-16   5.666990e-20  6.620705e-21
##                       SeedPerPlantMg SeedPerPlantMn SeedPerPlantMo
## BineM                   2.896234e-07   1.709076e-05   3.353602e-04
## SeedM                   1.794763e-23   3.292993e-14   1.634035e-12
## BineSeedM               7.752769e-16   1.100205e-10   8.081779e-09
## SeedN                   1.156269e-02   4.981403e-02   1.285379e-02
## SeedMOne                8.022929e-16   7.691120e-15   7.099570e-07
## NodPerPlant             4.643407e-01   2.779515e-01   9.039738e-01
## NodPerPlant.1           3.228929e-02   4.334461e-01   6.468975e-03
## Mic                     5.519822e-01   4.292482e-01   5.596332e-01
## Ves                     2.602017e-03   2.563340e-03   1.216252e-01
## Arb                     5.567117e-01   9.181144e-01   6.032831e-01
## pH                      2.925874e-01   7.209056e-01   5.456942e-06
## NitBine                 7.411844e-03   5.241324e-02   2.351691e-02
## Nit15                   7.954193e-09   4.003375e-06   4.499922e-04
## NitPerPlant             2.325877e-03   1.186032e-03   1.420540e-01
## Nit15PerPlant           4.041300e-02   2.998974e-01   1.259330e-01
## NitSeed                 1.277466e-01   2.354806e-01   5.225484e-01
## NitSeed15               5.949807e-10   4.044253e-08   2.542212e-04
## NitSeedPerPlant         5.565633e-23   3.142040e-13   1.210318e-12
## Nit15SeedPerPlant       1.926601e-06   2.925155e-10   1.041307e-03
## NitBineSeedPerPlant     2.083759e-21   4.513036e-13   1.766530e-11
## Nit15BineSeedPerPlant   2.722023e-03   6.816663e-06   3.548380e-02
## BineAl                  2.134149e-03   7.180938e-02   2.810618e-05
## BineB                   9.392419e-02   5.785220e-01   1.125756e-02
## BineCa                  3.398093e-01   1.017520e-01   9.404803e-01
## BineCo                  1.856135e-02   2.200079e-01   7.503793e-03
## BineCu                  4.939876e-04   5.340807e-04   1.763141e-01
## BineFe                  1.913136e-05   6.668500e-05   9.691162e-04
## BineK                   4.032613e-06   2.765031e-04   4.332027e-05
## BineMg                  1.180726e-04   1.163290e-02   1.403305e-06
## BineMn                  1.985975e-01   4.807192e-01   4.348066e-06
## BineMo                  6.386047e-01   6.531282e-01   1.810474e-01
## BineNi                  1.024451e-01   4.894917e-01   1.896631e-02
## BineP                   4.095310e-05   8.164096e-05   1.250027e-02
## BineS                   3.218308e-02   7.612312e-02   3.773472e-01
## BineZn                  1.165035e-05   8.874361e-03   3.913335e-06
## SeedAl                  5.831309e-05   9.293823e-05   1.154636e-02
## SeedB                   1.492480e-01   1.463486e-02   4.957528e-01
## SeedCo                  1.981245e-03   2.949316e-04   4.096198e-02
## SeedCu                  4.126035e-01   4.453252e-01   7.015590e-01
## SeedFe                  2.234330e-01   9.005887e-03   6.919617e-01
## SeedK                   9.841378e-04   1.935729e-04   2.725566e-02
## SeedMg                  2.424893e-05   3.352477e-04   1.703632e-02
## SeedMn                  2.744282e-02   3.081112e-07   9.033381e-01
## SeedMo                  5.558931e-01   6.010565e-01   7.662395e-06
## SeedNi                  3.370788e-01   5.627228e-01   5.398362e-01
## SeedP                   7.232269e-01   8.102334e-01   9.080006e-01
## SeedS                   1.346803e-08   5.300205e-08   6.285093e-06
## SeedZn                  1.839536e-01   5.532734e-04   3.814762e-01
## SoilAl                  1.846449e-01   8.157513e-01   1.172623e-03
## SoilB                   1.501353e-01   5.261547e-01   1.032997e-02
## SoilCa                  3.901152e-01   2.024391e-01   1.794620e-01
## SoilCo                  2.133235e-01   5.529394e-02   3.848865e-01
## SoilCu                  3.419636e-01   8.481657e-01   4.953337e-01
## SoilFe                  3.437604e-02   2.626958e-01   1.424408e-03
## SoilK                   3.536386e-08   9.087199e-09   6.040455e-04
## SoilMg                  2.347870e-08   5.002230e-09   5.220128e-04
## SoilMn                  8.631999e-01   5.673723e-01   1.778064e-02
## SoilMo                  3.287096e-01   2.361152e-01   3.675293e-02
## SoilNi                  4.083809e-01   9.567790e-02   7.174951e-01
## SoilP                   2.163955e-01   3.524893e-02   7.746748e-01
## SoilS                   4.933093e-01   6.235100e-01   3.730251e-01
## SoilZn                  5.234967e-01   4.367740e-01   6.976480e-01
## BinePerPlantAl          1.324471e-04   2.615817e-05   2.532623e-01
## BinePerPlantB           1.597249e-02   1.699619e-04   6.321050e-01
## BinePerPLantCa          1.564429e-09   5.708143e-09   6.926521e-04
## BinePerPlantCo          7.581395e-06   2.030425e-06   3.160417e-02
## BinePerPlantCu          1.269987e-04   3.665945e-03   8.192473e-05
## BinePerPlantFe          2.037698e-01   2.244946e-01   6.867713e-01
## BinePerPlantK           5.027180e-05   2.145913e-04   1.432013e-02
## BinePerPlantMg          1.782150e-01   7.533971e-03   7.426298e-02
## BinePerPlantMn          1.550585e-01   6.068225e-04   1.606088e-02
## BinePerPlantMo          5.000741e-01   8.084840e-01   2.183739e-02
## BinePerPlantNi          2.103676e-07   4.696267e-07   5.620897e-03
## BinePerPlantP           7.497938e-02   1.463003e-01   1.245014e-01
## BinePerPlantSe          3.810936e-05   3.881847e-04   4.345213e-04
## BinePerPLantZn          8.380338e-01   1.473126e-01   1.789448e-02
## SeedPerPlantAl          1.659944e-17   1.023471e-13   3.297607e-10
## SeedPerPlantB           5.337706e-16   1.027896e-16   1.172317e-08
## SeedPerPlantCa          4.632644e-22   5.877620e-26   3.160957e-08
## SeedPerPlantCo          5.112021e-29   4.222371e-24   2.731762e-11
## SeedPerPlantCu          1.568652e-24   2.243679e-17   1.206811e-12
## SeedPerPlantFe          2.607257e-16   2.308083e-18   3.632886e-07
## SeedPerPlantK           6.689588e-32   4.024041e-22   2.312741e-13
## SeedPerPlantMg          0.000000e+00   4.068514e-20   1.122773e-14
## SeedPerPlantMn          4.068514e-20   0.000000e+00   1.725638e-06
## SeedPerPlantMo          1.122773e-14   1.725638e-06   0.000000e+00
## SeedPerPlantNi          4.525264e-13   3.015218e-09   1.167539e-09
## SeedPerPlantP           1.212551e-22   1.044491e-16   1.113828e-12
## SeedPerPlantS           3.141368e-40   3.341089e-19   2.663734e-17
## SeedPerPlantZn          5.136177e-18   6.507457e-29   9.011181e-06
## BineSeedPerPlantAl      1.659944e-17   1.023471e-13   3.297607e-10
## BineSeedPerPlantB       4.475098e-05   7.902637e-06   1.702330e-01
## BineSeedPerPlantCa      2.248164e-04   2.842672e-07   5.866531e-01
## BineSeedPerPlantCo      1.151919e-10   5.510644e-10   2.602953e-04
## BineSeedPerPlantCu      3.026212e-26   1.281814e-18   1.806717e-12
## BineSeedPerPlantFe      9.614339e-17   2.453395e-18   1.750839e-07
## BineSeedPerPlantK       1.083332e-02   1.613228e-02   1.484613e-01
## BineSeedPerPlantMg      7.459401e-09   3.721556e-07   2.291624e-04
## BineSeedPerPlantMo      6.436226e-18   6.705311e-53   3.663529e-05
## BineSeedPerPlantNi      3.109761e-03   1.314070e-06   4.601903e-01
## BineSeedPerPlantP       5.183100e-03   3.839980e-02   1.744204e-05
## BineSeedPerPlantS       6.156120e-25   4.099175e-18   1.068660e-12
## BineSeedPerPlantS.1     2.697607e-05   4.118352e-04   3.859254e-04
## BineSeedPerPlantZn      4.513109e-18   8.721458e-29   8.237542e-06
##                       SeedPerPlantNi SeedPerPlantP SeedPerPlantS SeedPerPlantZn
## BineM                   2.409630e-04  4.932094e-03  9.425437e-08   2.819177e-07
## SeedM                   1.427690e-08  8.317956e-13  5.689377e-26   6.031918e-15
## BineSeedM               3.581291e-07  8.874195e-08  3.766471e-17   1.439148e-12
## SeedN                   1.320100e-01  1.110410e-01  3.710404e-03   3.205207e-03
## SeedMOne                6.384718e-06  7.239726e-15  3.119784e-14   4.386271e-11
## NodPerPlant             6.381128e-01  6.985408e-02  3.653904e-01   3.697690e-01
## NodPerPlant.1           1.919721e-02  5.180390e-01  2.916377e-02   2.810580e-01
## Mic                     4.101017e-01  1.824792e-01  7.592230e-01   4.422566e-01
## Ves                     6.299552e-03  4.222379e-03  1.164972e-02   9.827060e-04
## Arb                     9.483905e-01  6.224236e-01  3.858296e-01   7.348888e-01
## pH                      5.588253e-01  8.872736e-02  2.106091e-01   7.904461e-01
## NitBine                 4.628849e-03  5.967239e-01  2.474095e-03   8.602889e-03
## Nit15                   1.083892e-03  9.481481e-06  1.592142e-09   2.203402e-06
## NitPerPlant             4.521849e-01  8.837397e-03  3.210782e-03   2.757362e-04
## Nit15PerPlant           2.521425e-02  1.884596e-01  2.499701e-02   3.980132e-01
## NitSeed                 5.987715e-01  5.454637e-03  1.289826e-01   5.326631e-01
## NitSeed15               4.879465e-03  7.849290e-09  2.793658e-10   7.174653e-09
## NitSeedPerPlant         5.683674e-08  3.144391e-15  6.411650e-26   5.639115e-13
## Nit15SeedPerPlant       3.898267e-04  3.487559e-06  4.767522e-06   3.050406e-08
## NitBineSeedPerPlant     3.146393e-07  1.960866e-14  1.375845e-23   4.464690e-13
## Nit15BineSeedPerPlant   4.196459e-02  1.288363e-03  5.302717e-03   4.630437e-05
## BineAl                  6.032275e-03  1.092712e-01  2.505555e-04   1.276239e-02
## BineB                   4.711458e-02  9.169442e-01  2.481948e-02   2.773690e-01
## BineCa                  5.605152e-01  3.530645e-03  6.185283e-01   3.436887e-01
## BineCo                  8.478394e-02  3.296317e-01  6.108861e-03   4.790002e-02
## BineCu                  3.395610e-02  1.206914e-01  2.163960e-04   9.869992e-05
## BineFe                  7.243049e-02  8.599489e-04  9.228907e-06   1.784650e-05
## BineK                   1.305848e-03  9.476083e-04  4.671072e-07   4.705155e-04
## BineMg                  4.402521e-03  1.231127e-02  1.085007e-05   2.457947e-03
## BineMn                  3.614094e-01  2.048761e-01  9.095523e-02   8.017307e-01
## BineMo                  1.876744e-01  1.092824e-01  5.488290e-01   4.930397e-01
## BineNi                  1.105640e-01  9.106808e-01  3.344824e-02   1.535788e-01
## BineP                   2.204073e-02  1.573615e-02  9.004761e-06   6.878664e-06
## BineS                   5.938696e-03  8.245991e-01  1.574168e-02   2.128618e-02
## BineZn                  6.408065e-03  3.076241e-04  5.160986e-06   2.025749e-03
## SeedAl                  1.615138e-01  8.846490e-06  7.927828e-05   8.023548e-05
## SeedB                   1.456365e-02  3.464991e-01  1.133696e-01   1.334987e-02
## SeedCo                  3.576442e-03  3.128096e-04  1.040261e-02   5.191764e-03
## SeedCu                  7.921751e-01  1.680011e-01  2.848105e-01   2.692109e-01
## SeedFe                  5.591989e-02  2.324360e-02  3.233062e-01   6.976407e-03
## SeedK                   8.788748e-05  9.725764e-04  1.421728e-03   1.200640e-03
## SeedMg                  2.482623e-04  5.641655e-06  9.791274e-04   3.553318e-03
## SeedMn                  4.754488e-02  1.492612e-03  6.168919e-02   1.714987e-04
## SeedMo                  3.354607e-01  1.949696e-01  3.914093e-01   3.278894e-01
## SeedNi                  3.528381e-06  6.434135e-01  5.107768e-01   7.704782e-01
## SeedP                   9.975554e-01  4.685961e-02  5.462469e-01   3.794618e-01
## SeedS                   6.371348e-06  7.551073e-12  1.493077e-08   5.589743e-06
## SeedZn                  1.589751e-01  4.508280e-02  3.071728e-01   1.565996e-05
## SoilAl                  5.121059e-01  1.332130e-01  2.614233e-01   9.314406e-01
## SoilB                   4.391484e-01  2.447354e-02  1.196369e-01   4.874195e-01
## SoilCa                  6.446749e-01  4.069045e-02  4.083669e-01   5.730633e-01
## SoilCo                  8.338293e-01  1.581957e-02  2.311428e-01   5.141177e-02
## SoilCu                  3.912910e-02  4.479354e-01  2.868660e-01   6.883852e-01
## SoilFe                  3.129561e-01  9.509208e-03  6.050785e-02   2.673985e-01
## SoilK                   1.018291e-02  1.689954e-07  7.460505e-08   2.218336e-09
## SoilMg                  8.772709e-03  1.348841e-07  5.043355e-08   1.062057e-09
## SoilMn                  8.006168e-01  2.765993e-01  7.104043e-01   6.471341e-01
## SoilMo                  1.906192e-01  7.385452e-01  4.002263e-01   6.518767e-01
## SoilNi                  7.585943e-01  6.320327e-02  4.354916e-01   5.225110e-02
## SoilP                   7.028744e-01  5.912303e-02  2.613858e-01   2.109505e-02
## SoilS                   3.472380e-01  9.961651e-01  5.146000e-01   9.579469e-01
## SoilZn                  9.515012e-01  7.486821e-01  4.538443e-01   3.481670e-01
## BinePerPlantAl          7.561288e-02  3.336086e-02  2.950221e-04   2.457777e-06
## BinePerPlantB           9.808283e-01  1.276292e-02  6.933099e-02   2.453179e-05
## BinePerPLantCa          1.010321e-02  1.289921e-07  1.120296e-08   4.523770e-10
## BinePerPlantCo          3.768967e-03  7.567409e-03  1.188052e-05   2.068094e-07
## BinePerPlantCu          2.120457e-03  5.116440e-03  7.167729e-05   1.963435e-04
## BinePerPlantFe          5.084275e-02  9.190391e-01  1.561416e-01   7.244114e-02
## BinePerPlantK           8.520361e-03  3.785658e-02  3.423941e-05   2.033528e-06
## BinePerPlantMg          9.429837e-01  7.801337e-01  3.178551e-01   1.984573e-03
## BinePerPlantMn          5.798552e-01  8.489490e-01  2.761027e-01   8.057889e-04
## BinePerPlantMo          6.861447e-01  5.225486e-02  4.978146e-01   4.462964e-01
## BinePerPlantNi          1.701780e-03  7.891693e-04  3.191026e-07   1.306700e-08
## BinePerPlantP           9.512780e-02  2.352965e-01  9.671270e-02   4.675236e-02
## BinePerPlantSe          1.384643e-01  2.857683e-04  4.044396e-05   1.856309e-05
## BinePerPLantZn          5.970455e-01  2.792385e-01  7.817315e-01   1.146297e-01
## SeedPerPlantAl          8.998209e-10  4.047177e-09  4.207888e-19   4.732858e-14
## SeedPerPlantB           8.072884e-11  1.834259e-09  4.645665e-19   4.176466e-18
## SeedPerPlantCa          2.522528e-09  1.691491e-19  6.524748e-19   5.165325e-19
## SeedPerPlantCo          1.973069e-13  1.049513e-20  9.267339e-25   6.531197e-19
## SeedPerPlantCu          6.576984e-09  8.519636e-46  9.597699e-25   4.748199e-16
## SeedPerPlantFe          1.588546e-10  9.768356e-15  9.981701e-17   5.730464e-20
## SeedPerPlantK           5.583484e-14  4.293046e-17  6.843926e-40   6.718785e-21
## SeedPerPlantMg          4.525264e-13  1.212551e-22  3.141368e-40   5.136177e-18
## SeedPerPlantMn          3.015218e-09  1.044491e-16  3.341089e-19   6.507457e-29
## SeedPerPlantMo          1.167539e-09  1.113828e-12  2.663734e-17   9.011181e-06
## SeedPerPlantNi          0.000000e+00  2.272126e-08  4.531604e-13   2.882197e-08
## SeedPerPlantP           2.272126e-08  0.000000e+00  2.481056e-22   7.205476e-14
## SeedPerPlantS           4.531604e-13  2.481056e-22  0.000000e+00   1.426243e-17
## SeedPerPlantZn          2.882197e-08  7.205476e-14  1.426243e-17   0.000000e+00
## BineSeedPerPlantAl      8.998209e-10  4.047177e-09  4.207888e-19   4.732858e-14
## BineSeedPerPlantB       4.362679e-02  1.901567e-02  9.599963e-05   6.211488e-07
## BineSeedPerPlantCa      2.905620e-01  1.965035e-04  2.309532e-03   4.081798e-08
## BineSeedPerPlantCo      4.099255e-03  1.821737e-08  1.119384e-09   4.603400e-11
## BineSeedPerPlantCu      4.167019e-09  1.264382e-41  2.321812e-26   2.005458e-17
## BineSeedPerPlantFe      1.088565e-10  9.406076e-15  3.144034e-17   2.124093e-20
## BineSeedPerPlantK       2.846039e-03  2.142409e-01  6.339736e-03   2.968381e-03
## BineSeedPerPlantMg      1.487040e-04  4.113174e-04  6.342106e-09   1.064824e-09
## BineSeedPerPlantMo      4.782350e-08  4.509782e-14  9.534998e-17   3.281775e-29
## BineSeedPerPlantNi      7.511733e-02  1.277881e-01  7.900690e-03   3.085178e-06
## BineSeedPerPlantP       1.880940e-02  1.656925e-04  5.124053e-03   1.220906e-02
## BineSeedPerPlantS       1.249156e-08  2.006431e-66  1.742165e-24   2.419725e-15
## BineSeedPerPlantS.1     4.966608e-04  8.022092e-04  3.389345e-05   5.757811e-05
## BineSeedPerPlantZn      3.235042e-08  6.799553e-14  1.255461e-17  3.805594e-118
##                       BineSeedPerPlantAl BineSeedPerPlantB BineSeedPerPlantCa
## BineM                       1.232852e-12      1.501309e-20       7.731877e-04
## SeedM                       6.229793e-23      7.205288e-09       1.494702e-04
## BineSeedM                   1.471661e-21      1.520164e-14       1.233070e-04
## SeedN                       8.455587e-06      1.016101e-07       6.959087e-02
## SeedMOne                    6.421513e-08      5.591237e-03       1.889548e-06
## NodPerPlant                 7.804224e-01      5.458432e-01       9.805331e-02
## NodPerPlant.1               1.302129e-02      1.696241e-01       6.058855e-01
## Mic                         4.875941e-01      2.946887e-02       7.144626e-01
## Ves                         1.670009e-02      3.334888e-02       1.717322e-02
## Arb                         8.036496e-02      1.700334e-03       4.720278e-01
## pH                          3.621123e-01      2.011131e-01       2.176595e-01
## NitBine                     3.811278e-06      8.461478e-06       7.569761e-01
## Nit15                       8.944122e-09      2.814046e-05       8.282887e-02
## NitPerPlant                 3.056529e-04      1.256281e-13       1.401620e-10
## Nit15PerPlant               8.414823e-02      2.610564e-01       2.290366e-03
## NitSeed                     8.779574e-01      7.395109e-01       6.821286e-02
## NitSeed15                   3.770000e-08      3.109667e-08       3.947503e-07
## NitSeedPerPlant             5.285547e-18      5.738039e-07       1.116666e-04
## Nit15SeedPerPlant           1.215700e-06      7.416181e-04       2.786453e-05
## NitBineSeedPerPlant         9.711025e-18      2.828398e-08       1.448967e-05
## Nit15BineSeedPerPlant       1.390530e-03      9.962938e-04       1.119071e-06
## BineAl                      1.315577e-06      1.861894e-03       7.560063e-01
## BineB                       8.872012e-05      3.263469e-04       3.070014e-02
## BineCa                      2.246157e-01      1.272968e-01       2.811605e-04
## BineCo                      3.371025e-05      1.795451e-04       8.926296e-01
## BineCu                      1.423231e-07      7.231401e-11       3.972360e-02
## BineFe                      1.755172e-07      8.200900e-06       6.767589e-03
## BineK                       1.411365e-08      2.522790e-04       3.010899e-01
## BineMg                      1.748233e-08      2.164138e-05       7.590763e-01
## BineMn                      5.405082e-02      9.887454e-01       2.601096e-02
## BineMo                      1.267545e-01      2.925642e-02       2.698725e-01
## BineNi                      7.279537e-05      4.258092e-04       2.359821e-01
## BineP                       1.513780e-09      7.916192e-12       1.033466e-02
## BineS                       4.560130e-05      9.032161e-07       9.735297e-01
## BineZn                      2.887799e-06      2.486871e-03       3.401204e-01
## SeedAl                      3.498671e-02      1.508562e-04       5.708819e-07
## SeedB                       1.111367e-01      1.733695e-01       2.376608e-01
## SeedCo                      2.805453e-01      4.792033e-01       9.811563e-02
## SeedCu                      9.368836e-04      4.387563e-07       1.205751e-01
## SeedFe                      9.344087e-01      3.997120e-01       4.228843e-02
## SeedK                       4.951417e-02      5.642842e-01       9.278507e-01
## SeedMg                      2.367152e-01      3.013789e-01       1.391120e-01
## SeedMn                      3.901326e-01      9.956312e-01       1.010156e-03
## SeedMo                      8.819279e-01      1.670464e-04       3.277302e-03
## SeedNi                      9.816069e-01      2.844156e-02       4.704537e-02
## SeedP                       3.192716e-03      2.347078e-07       2.710705e-01
## SeedS                       6.453515e-03      6.400730e-01       1.486504e-01
## SeedZn                      7.432806e-01      9.146440e-01       2.431788e-03
## SoilAl                      3.292979e-01      9.241694e-01       6.319136e-01
## SoilB                       6.923108e-01      3.668125e-01       9.938677e-01
## SoilCa                      9.648664e-01      7.441445e-02       3.811668e-01
## SoilCo                      8.207298e-01      2.853522e-01       1.390710e-01
## SoilCu                      3.791767e-02      4.859517e-02       2.772300e-01
## SoilFe                      1.497751e-01      7.499199e-01       2.917553e-01
## SoilK                       9.636181e-07      1.509560e-05       2.263159e-07
## SoilMg                      7.110604e-07      1.123817e-05       2.065247e-07
## SoilMn                      5.045258e-01      1.273955e-02       7.909585e-02
## SoilMo                      3.289905e-01      6.502633e-01       2.350056e-01
## SoilNi                      7.440864e-01      3.783988e-01       1.823262e-01
## SoilP                       6.898412e-01      5.984026e-01       3.539125e-02
## SoilS                       4.768467e-01      1.797979e-01       9.763498e-01
## SoilZn                      3.911058e-02      1.841334e-04       1.584811e-01
## BinePerPlantAl              4.479583e-07      4.364809e-83       1.032351e-08
## BinePerPlantB               8.021981e-02      5.279934e-08       2.840321e-45
## BinePerPLantCa              2.072193e-08      2.956927e-14       1.017626e-14
## BinePerPlantCo              4.329040e-08      2.273803e-22       2.128458e-07
## BinePerPlantCu              7.742116e-06      3.564542e-09       5.900671e-04
## BinePerPlantFe              2.544365e-02      5.891319e-08       2.628993e-02
## BinePerPlantK               8.968386e-09      1.001884e-23       4.815333e-05
## BinePerPlantMg              4.224216e-02      1.714064e-12       2.672530e-09
## BinePerPlantMn              4.017398e-02      2.935642e-09       3.606781e-07
## BinePerPlantMo              8.171657e-01      6.689227e-01       4.774588e-02
## BinePerPlantNi              9.737315e-10      3.590480e-28       2.136171e-08
## BinePerPlantP               5.428841e-02      3.083823e-05       1.357291e-03
## BinePerPlantSe              4.847297e-06      2.090607e-11       5.410268e-07
## BinePerPLantZn              3.745883e-01      1.932687e-06       3.783591e-04
## SeedPerPlantAl              0.000000e+00      1.051798e-07       4.525985e-03
## SeedPerPlantB               1.352926e-17      4.038145e-08       3.361840e-04
## SeedPerPlantCa              1.989467e-13      3.624503e-04       2.139645e-06
## SeedPerPlantCo              5.838217e-13      8.249328e-04       2.622435e-04
## SeedPerPlantCu              1.381635e-10      3.236330e-03       1.909102e-04
## SeedPerPlantFe              8.438447e-12      1.869152e-04       3.551437e-05
## SeedPerPlantK               2.681284e-22      1.108410e-05       3.251588e-03
## SeedPerPlantMg              1.659944e-17      4.475098e-05       2.248164e-04
## SeedPerPlantMn              1.023471e-13      7.902637e-06       2.842672e-07
## SeedPerPlantMo              3.297607e-10      1.702330e-01       5.866531e-01
## SeedPerPlantNi              8.998209e-10      4.362679e-02       2.905620e-01
## SeedPerPlantP               4.047177e-09      1.901567e-02       1.965035e-04
## SeedPerPlantS               4.207888e-19      9.599963e-05       2.309532e-03
## SeedPerPlantZn              4.732858e-14      6.211488e-07       4.081798e-08
## BineSeedPerPlantAl          0.000000e+00      1.051798e-07       4.525985e-03
## BineSeedPerPlantB           1.051798e-07      0.000000e+00       8.952639e-09
## BineSeedPerPlantCa          4.525985e-03      8.952639e-09       0.000000e+00
## BineSeedPerPlantCo          4.250148e-09      5.045471e-14       1.410535e-14
## BineSeedPerPlantCu          1.381044e-11      5.855226e-04       5.725004e-05
## BineSeedPerPlantFe          2.442556e-12      6.771681e-05       2.149213e-05
## BineSeedPerPlantK           5.886389e-04      1.212997e-09       8.736136e-03
## BineSeedPerPlantMg          8.597181e-13      7.799034e-23       9.143068e-06
## BineSeedPerPlantMo          2.563639e-13      1.301520e-07       5.321549e-09
## BineSeedPerPlantNi          4.891145e-04      6.838935e-12       2.561956e-08
## BineSeedPerPlantP           3.534788e-02      2.674423e-01       2.272109e-02
## BineSeedPerPlantS           2.950835e-10      3.347616e-03       4.493151e-05
## BineSeedPerPlantS.1         6.013653e-05      3.483649e-07       1.090501e-04
## BineSeedPerPlantZn          3.836152e-14      4.645371e-07       3.317320e-08
##                       BineSeedPerPlantCo BineSeedPerPlantCu BineSeedPerPlantFe
## BineM                       2.274433e-11       4.135028e-05       4.223878e-06
## SeedM                       1.008029e-14       1.683978e-16       5.535656e-15
## BineSeedM                   1.378680e-15       3.388557e-11       1.472421e-11
## SeedN                       4.956171e-05       4.783122e-03       2.659472e-03
## SeedMOne                    5.429866e-10       1.232032e-12       1.058517e-10
## NodPerPlant                 5.462334e-02       8.650503e-02       8.909326e-02
## NodPerPlant.1               3.239750e-01       3.743024e-01       6.462614e-01
## Mic                         3.329116e-01       4.931121e-01       9.750851e-01
## Ves                         2.011062e-02       4.317635e-03       1.433738e-02
## Arb                         5.324933e-02       7.913804e-01       3.445461e-01
## pH                          3.172851e-01       1.343727e-01       6.227572e-01
## NitBine                     7.694480e-02       8.993896e-02       3.444383e-02
## Nit15                       9.443630e-05       1.399277e-07       6.138523e-07
## NitPerPlant                 1.664149e-16       1.155884e-03       6.772450e-04
## Nit15PerPlant               5.478565e-02       1.477916e-01       2.091095e-01
## NitSeed                     1.583194e-01       4.495898e-02       1.247141e-01
## NitSeed15                   3.799795e-14       1.583359e-10       9.906789e-09
## NitSeedPerPlant             3.181319e-14       1.008508e-17       5.581748e-15
## Nit15SeedPerPlant           1.490655e-06       1.903691e-06       5.179171e-08
## NitBineSeedPerPlant         6.744109e-17       3.788476e-17       8.645723e-15
## Nit15BineSeedPerPlant       1.091343e-06       1.148090e-03       1.345360e-04
## BineAl                      6.720660e-03       1.031702e-02       1.249695e-02
## BineB                       2.281710e-01       3.665307e-01       3.273362e-01
## BineCa                      2.350589e-02       6.354465e-02       1.825727e-01
## BineCo                      2.883185e-02       5.995334e-02       5.092907e-02
## BineCu                      3.755748e-05       8.210558e-03       9.352691e-04
## BineFe                      7.397125e-08       1.389018e-04       9.803945e-05
## BineK                       3.105090e-04       6.986960e-05       1.455264e-04
## BineMg                      2.446967e-04       5.469646e-04       1.937817e-03
## BineMn                      4.424642e-01       1.333935e-01       5.353223e-01
## BineMo                      2.211791e-01       4.145423e-01       7.804948e-01
## BineNi                      2.896010e-01       3.611985e-01       2.556592e-01
## BineP                       4.646906e-07       4.432417e-04       5.366177e-05
## BineS                       1.357053e-01       3.705346e-01       7.025539e-02
## BineZn                      3.397826e-05       3.266904e-05       1.400825e-04
## SeedAl                      4.415820e-10       1.352514e-06       1.354970e-05
## SeedB                       7.261591e-01       2.542755e-01       7.431827e-02
## SeedCo                      4.041787e-01       1.123874e-03       1.111564e-02
## SeedCu                      6.800191e-04       5.126705e-01       3.923791e-01
## SeedFe                      6.419550e-01       2.780388e-02       7.969853e-06
## SeedK                       5.577283e-01       1.358169e-03       1.550425e-02
## SeedMg                      4.977980e-01       1.077986e-04       1.162590e-02
## SeedMn                      2.983087e-01       6.770715e-03       4.556628e-03
## SeedMo                      4.450679e-02       4.775007e-01       4.953864e-01
## SeedNi                      2.212169e-02       8.784456e-01       5.526572e-01
## SeedP                       5.657790e-03       3.693847e-01       4.599402e-01
## SeedS                       1.024790e-01       2.046747e-09       3.885117e-05
## SeedZn                      6.030710e-01       5.317649e-02       8.352311e-03
## SoilAl                      4.323907e-02       1.297608e-01       4.512661e-01
## SoilB                       2.625705e-01       6.764764e-02       1.951130e-01
## SoilCa                      5.303927e-01       1.458579e-01       3.217586e-01
## SoilCo                      1.946474e-01       3.729088e-02       2.582205e-02
## SoilCu                      7.521237e-01       9.429770e-01       6.639667e-01
## SoilFe                      4.366042e-02       2.005554e-02       1.160811e-01
## SoilK                       3.673807e-12       6.169795e-08       3.528551e-07
## SoilMg                      3.790501e-12       4.345781e-08       2.057985e-07
## SoilMn                      6.598642e-01       4.576147e-01       5.005465e-01
## SoilMo                      4.718001e-01       4.687237e-01       6.940688e-01
## SoilNi                      3.433354e-01       8.156556e-02       6.189784e-02
## SoilP                       9.970532e-02       7.551260e-02       3.869184e-02
## SoilS                       8.350860e-01       8.088346e-01       9.683864e-01
## SoilZn                      5.405797e-03       8.634011e-01       7.452324e-01
## BinePerPlantAl              1.518051e-13       1.342467e-03       1.836217e-04
## BinePerPlantB               2.081651e-11       5.207280e-03       1.946677e-03
## BinePerPLantCa              1.009712e-78       2.782370e-09       5.395013e-09
## BinePerPlantCo              7.155135e-14       2.003600e-04       2.122799e-05
## BinePerPlantCu              1.703706e-09       2.312385e-04       1.973048e-04
## BinePerPlantFe              4.831131e-03       2.514697e-01       1.032120e-01
## BinePerPlantK               1.306487e-11       8.815679e-04       9.616594e-05
## BinePerPlantMg              3.332153e-06       3.215396e-01       6.427490e-02
## BinePerPlantMn              1.145340e-03       4.265509e-01       9.376345e-02
## BinePerPlantMo              1.405967e-03       7.011558e-02       2.871445e-01
## BinePerPlantNi              8.917950e-20       6.665482e-06       6.942629e-07
## BinePerPlantP               4.428150e-05       7.695752e-02       8.199537e-02
## BinePerPlantSe              1.720355e-18       8.715673e-06       4.741188e-05
## BinePerPLantZn              3.690096e-02       6.729713e-01       9.064783e-01
## SeedPerPlantAl              4.250148e-09       1.381044e-11       2.442556e-12
## SeedPerPlantB               9.618536e-09       3.396918e-12       5.137973e-14
## SeedPerPlantCa              9.344949e-10       2.528596e-19       4.487135e-16
## SeedPerPlantCo              4.271042e-08       7.741649e-23       6.486881e-17
## SeedPerPlantCu              5.202362e-09       1.257162e-69       1.887364e-17
## SeedPerPlantFe              4.011118e-09       5.360518e-18       1.762440e-77
## SeedPerPlantK               2.212185e-08       7.781144e-22       4.719646e-17
## SeedPerPlantMg              1.151919e-10       3.026212e-26       9.614339e-17
## SeedPerPlantMn              5.510644e-10       1.281814e-18       2.453395e-18
## SeedPerPlantMo              2.602953e-04       1.806717e-12       1.750839e-07
## SeedPerPlantNi              4.099255e-03       4.167019e-09       1.088565e-10
## SeedPerPlantP               1.821737e-08       1.264382e-41       9.406076e-15
## SeedPerPlantS               1.119384e-09       2.321812e-26       3.144034e-17
## SeedPerPlantZn              4.603400e-11       2.005458e-17       2.124093e-20
## BineSeedPerPlantAl          4.250148e-09       1.381044e-11       2.442556e-12
## BineSeedPerPlantB           5.045471e-14       5.855226e-04       6.771681e-05
## BineSeedPerPlantCa          1.410535e-14       5.725004e-05       2.149213e-05
## BineSeedPerPlantCo          0.000000e+00       2.657532e-10       7.476162e-10
## BineSeedPerPlantCu          2.657532e-10       0.000000e+00       2.209230e-18
## BineSeedPerPlantFe          7.476162e-10       2.209230e-18       0.000000e+00
## BineSeedPerPlantK           2.851903e-04       1.954910e-02       6.231407e-03
## BineSeedPerPlantMg          7.707553e-15       1.410559e-06       2.216647e-07
## BineSeedPerPlantMo          1.700380e-11       2.691974e-16       3.601901e-17
## BineSeedPerPlantNi          1.290168e-05       2.974379e-02       3.959236e-03
## BineSeedPerPlantP           2.795726e-05       2.131232e-04       2.356672e-03
## BineSeedPerPlantS           4.301217e-10       1.094152e-47       6.009053e-16
## BineSeedPerPlantS.1         9.592827e-09       5.504962e-05       1.749092e-04
## BineSeedPerPlantZn          2.668637e-11       1.635921e-17       1.911396e-20
##                       BineSeedPerPlantK BineSeedPerPlantMg BineSeedPerPlantMo
## BineM                      5.313297e-11       1.963493e-39       2.016270e-06
## SeedM                      5.634775e-04       1.898343e-14       1.280180e-13
## BineSeedM                  6.737753e-07       5.387968e-26       3.158046e-11
## SeedN                      4.175128e-08       2.146142e-11       3.099981e-02
## SeedMOne                   9.711969e-01       2.700945e-03       1.944500e-13
## NodPerPlant                4.370392e-02       5.737543e-01       4.305307e-01
## NodPerPlant.1              1.434596e-03       7.621753e-04       3.190624e-01
## Mic                        3.276573e-02       8.512363e-02       6.147989e-01
## Ves                        1.656236e-01       2.257306e-02       2.692025e-03
## Arb                        5.690588e-03       3.458213e-03       7.276334e-01
## pH                         3.753153e-01       7.159835e-01       3.750993e-01
## NitBine                    5.915650e-08       1.955172e-09       4.166338e-02
## Nit15                      3.808725e-04       4.067954e-07       2.170653e-06
## NitPerPlant                9.658205e-05       4.079380e-11       7.741764e-05
## Nit15PerPlant              6.623380e-01       8.314136e-01       4.698877e-01
## NitSeed                    3.254280e-01       2.481954e-01       2.458803e-01
## NitSeed15                  1.513685e-02       7.992061e-08       3.797912e-08
## NitSeedPerPlant            4.316875e-03       2.076041e-10       1.493843e-12
## Nit15SeedPerPlant          2.936323e-02       2.315924e-04       1.167144e-10
## NitBineSeedPerPlant        1.815240e-03       7.261820e-12       7.411262e-13
## Nit15BineSeedPerPlant      9.810606e-02       1.648433e-03       2.042046e-06
## BineAl                     2.367553e-05       1.962860e-09       7.130417e-02
## BineB                      3.100492e-05       1.305712e-07       5.114574e-01
## BineCa                     6.908409e-04       1.387313e-02       1.358176e-01
## BineCo                     2.347632e-02       8.703603e-07       2.602101e-01
## BineCu                     1.398154e-03       2.034450e-10       2.165609e-04
## BineFe                     7.473450e-01       1.334664e-06       9.739298e-05
## BineK                      1.271040e-01       3.245829e-05       7.557141e-04
## BineMg                     2.357877e-03       6.262756e-10       2.022435e-02
## BineMn                     5.487253e-01       5.073131e-02       2.687751e-01
## BineMo                     8.318227e-03       6.279754e-02       4.314252e-01
## BineNi                     2.119204e-03       9.340717e-07       4.934845e-01
## BineP                      1.898219e-03       3.013366e-12       4.690240e-05
## BineS                      4.799233e-06       3.033436e-08       4.134566e-02
## BineZn                     4.264792e-01       1.251578e-05       2.405973e-02
## SeedAl                     2.734477e-02       2.588516e-04       6.569529e-05
## SeedB                      1.174487e-02       4.640615e-02       1.015246e-02
## SeedCo                     2.919232e-01       8.659314e-01       3.817302e-04
## SeedCu                     8.301100e-03       4.221584e-06       2.621327e-01
## SeedFe                     5.835007e-01       4.059337e-01       1.184635e-02
## SeedK                      1.509161e-01       5.413632e-01       3.973010e-04
## SeedMg                     6.996447e-01       7.665758e-01       8.674437e-04
## SeedMn                     8.676702e-01       6.381869e-01       4.241284e-07
## SeedMo                     8.891841e-02       8.945877e-02       2.936145e-01
## SeedNi                     7.864143e-01       2.169029e-01       7.417832e-01
## SeedP                      1.097206e-03       1.490735e-06       5.312051e-01
## SeedS                      8.406852e-01       4.828206e-01       6.984874e-07
## SeedZn                     8.919896e-01       9.745207e-01       4.186992e-04
## SoilAl                     5.454025e-01       1.048645e-01       6.718352e-01
## SoilB                      1.444407e-01       9.969857e-01       7.340237e-01
## SoilCa                     1.146320e-03       4.019169e-02       2.974059e-01
## SoilCo                     1.261192e-03       2.508270e-01       1.364273e-01
## SoilCu                     6.050844e-06       4.010555e-03       7.028828e-01
## SoilFe                     4.912169e-01       6.253663e-01       4.129834e-01
## SoilK                      3.878716e-01       6.704839e-06       8.030265e-09
## SoilMg                     3.627707e-01       4.217796e-06       4.415346e-09
## SoilMn                     9.936221e-03       6.151988e-02       2.391416e-01
## SoilMo                     6.218343e-02       2.561521e-02       2.163699e-01
## SoilNi                     3.100244e-03       2.670659e-01       1.921127e-01
## SoilP                      1.722844e-03       6.240486e-01       5.357959e-02
## SoilS                      5.287715e-03       6.812995e-02       8.210497e-01
## SoilZn                     3.755312e-01       5.649887e-04       2.800701e-01
## BinePerPlantAl             1.724829e-09       1.916769e-21       5.255760e-07
## BinePerPlantB              9.227415e-03       1.034425e-04       8.225333e-06
## BinePerPLantCa             3.298903e-04       1.629704e-14       2.099067e-10
## BinePerPlantCo             7.469838e-14       4.942857e-24       1.502785e-08
## BinePerPlantCu             1.303920e-11       3.627298e-16       9.181396e-04
## BinePerPlantFe             7.287265e-47       1.024635e-08       6.562161e-02
## BinePerPlantK              3.978503e-13       8.406346e-43       1.402506e-05
## BinePerPlantMg             1.444495e-07       1.985400e-07       1.690791e-04
## BinePerPlantMn             1.849309e-04       1.242650e-04       1.170771e-05
## BinePerPlantMo             8.606412e-01       2.323330e-01       9.853719e-01
## BinePerPlantNi             2.091959e-12       4.642431e-34       5.501489e-09
## BinePerPlantP              2.118867e-11       1.471302e-07       3.828465e-02
## BinePerPlantSe             7.095129e-06       1.406951e-14       8.415951e-05
## BinePerPLantZn             3.268427e-07       5.186540e-04       1.716543e-02
## SeedPerPlantAl             5.886389e-04       8.597181e-13       2.563639e-13
## SeedPerPlantB              2.915108e-05       9.420772e-14       1.428006e-16
## SeedPerPlantCa             1.828827e-01       1.541450e-05       4.584465e-23
## SeedPerPlantCo             7.165404e-03       8.873238e-07       1.031771e-21
## SeedPerPlantCu             5.592370e-02       1.745111e-05       7.934325e-15
## SeedPerPlantFe             1.430288e-02       1.340628e-06       5.750243e-17
## SeedPerPlantK              6.839750e-04       1.357387e-10       7.397322e-20
## SeedPerPlantMg             1.083332e-02       7.459401e-09       6.436226e-18
## SeedPerPlantMn             1.613228e-02       3.721556e-07       6.705311e-53
## SeedPerPlantMo             1.484613e-01       2.291624e-04       3.663529e-05
## SeedPerPlantNi             2.846039e-03       1.487040e-04       4.782350e-08
## SeedPerPlantP              2.142409e-01       4.113174e-04       4.509782e-14
## SeedPerPlantS              6.339736e-03       6.342106e-09       9.534998e-17
## SeedPerPlantZn             2.968381e-03       1.064824e-09       3.281775e-29
## BineSeedPerPlantAl         5.886389e-04       8.597181e-13       2.563639e-13
## BineSeedPerPlantB          1.212997e-09       7.799034e-23       1.301520e-07
## BineSeedPerPlantCa         8.736136e-03       9.143068e-06       5.321549e-09
## BineSeedPerPlantCo         2.851903e-04       7.707553e-15       1.700380e-11
## BineSeedPerPlantCu         1.954910e-02       1.410559e-06       2.691974e-16
## BineSeedPerPlantFe         6.231407e-03       2.216647e-07       3.601901e-17
## BineSeedPerPlantK          0.000000e+00       8.395588e-12       2.702227e-03
## BineSeedPerPlantMg         8.395588e-12       0.000000e+00       1.401906e-08
## BineSeedPerPlantMo         2.702227e-03       1.401906e-08       0.000000e+00
## BineSeedPerPlantNi         1.448511e-05       4.098104e-07       4.600609e-09
## BineSeedPerPlantP          3.997748e-01       1.440534e-02       8.311037e-02
## BineSeedPerPlantS          8.644770e-02       3.288007e-05       1.228439e-15
## BineSeedPerPlantS.1        1.947766e-12       3.285893e-12       4.601787e-05
## BineSeedPerPlantZn         2.632179e-03       6.933492e-10       3.477427e-29
##                       BineSeedPerPlantNi BineSeedPerPlantP BineSeedPerPlantS
## BineM                       8.189738e-06      3.525044e-02      6.929372e-04
## SeedM                       1.893968e-03      1.163480e-03      1.225407e-14
## BineSeedM                   9.362056e-05      3.562854e-03      2.715045e-09
## SeedN                       1.985167e-01      3.107058e-03      4.660481e-02
## SeedMOne                    2.942364e-03      2.024178e-02      3.569954e-15
## NodPerPlant                 3.728820e-01      7.473379e-02      8.286406e-02
## NodPerPlant.1               1.256979e-01      7.430265e-01      3.972038e-01
## Mic                         1.516146e-01      7.288169e-02      2.718172e-01
## Ves                         1.862406e-01      5.653784e-03      3.468977e-03
## Arb                         9.317156e-02      4.278182e-01      8.322708e-01
## pH                          2.274687e-07      3.593869e-12      1.059768e-01
## NitBine                     2.551381e-02      8.442703e-01      3.827288e-01
## Nit15                       2.681804e-04      2.434532e-01      2.444340e-06
## NitPerPlant                 1.451378e-05      9.066102e-03      1.829787e-03
## Nit15PerPlant               8.230672e-01      1.206256e-04      2.398908e-01
## NitSeed                     8.842821e-01      8.064537e-01      8.627300e-03
## NitSeed15                   2.918506e-03      8.155836e-03      8.090583e-10
## NitSeedPerPlant             7.132129e-03      1.873969e-03      4.811618e-17
## Nit15SeedPerPlant           1.142126e-03      6.962220e-03      1.217134e-06
## NitBineSeedPerPlant         2.640935e-03      1.287561e-03      1.993908e-16
## Nit15BineSeedPerPlant       8.911164e-03      1.304517e-04      5.942077e-04
## BineAl                      6.381248e-01      1.294443e-02      5.545227e-02
## BineB                       4.408479e-01      5.345792e-01      8.240660e-01
## BineCa                      7.381923e-01      3.595344e-02      7.312399e-03
## BineCo                      9.578208e-01      4.417233e-02      2.217495e-01
## BineCu                      5.669227e-05      8.853291e-01      5.249271e-02
## BineFe                      8.257397e-02      8.081206e-03      3.229262e-04
## BineK                       1.848132e-01      1.361831e-01      4.422541e-04
## BineMg                      9.126974e-01      2.671792e-04      5.024164e-03
## BineMn                      4.355757e-06      4.095319e-07      1.977904e-01
## BineMo                      2.574741e-05      4.091438e-13      1.597229e-01
## BineNi                      5.946955e-01      4.999856e-01      8.710942e-01
## BineP                       8.657084e-04      2.111857e-01      4.842256e-03
## BineS                       3.451162e-04      1.032443e-01      8.872006e-01
## BineZn                      2.959387e-01      4.357324e-06      1.586721e-04
## SeedAl                      5.535958e-02      4.223850e-04      2.587543e-06
## SeedB                       4.694457e-02      8.923779e-01      3.097854e-01
## SeedCo                      1.310951e-01      8.138484e-01      5.101045e-04
## SeedCu                      5.353223e-03      6.069816e-01      3.498222e-01
## SeedFe                      5.509882e-01      8.784031e-01      3.379526e-02
## SeedK                       1.015957e-01      2.117622e-01      1.651471e-03
## SeedMg                      3.685494e-01      9.715097e-01      1.931263e-05
## SeedMn                      2.204945e-03      6.945105e-01      2.354950e-03
## SeedMo                      1.827864e-05      4.335989e-02      3.055197e-01
## SeedNi                      7.684955e-01      4.622198e-01      7.697907e-01
## SeedP                       9.125828e-03      8.685462e-01      1.303859e-01
## SeedS                       3.129044e-01      4.734489e-01      7.546150e-11
## SeedZn                      9.422482e-03      7.360652e-01      5.483926e-02
## SoilAl                      9.653250e-04      2.117347e-09      1.217436e-01
## SoilB                       3.462887e-02      2.747911e-02      3.337081e-02
## SoilCa                      7.556530e-01      8.171052e-01      6.462710e-02
## SoilCo                      2.618591e-01      3.595659e-02      2.572616e-02
## SoilCu                      2.023536e-01      3.252840e-01      5.793343e-01
## SoilFe                      4.575790e-02      4.688046e-05      1.146148e-02
## SoilK                       1.878482e-03      4.181385e-03      3.523809e-08
## SoilMg                      1.590048e-03      5.263484e-03      2.701741e-08
## SoilMn                      3.885563e-06      2.087294e-03      3.837948e-01
## SoilMo                      1.045452e-02      6.359925e-03      6.659117e-01
## SoilNi                      4.436186e-01      1.131420e-01      8.861266e-02
## SoilP                       2.977575e-01      9.574411e-01      7.175060e-02
## SoilS                       7.867348e-01      9.950992e-01      9.067292e-01
## SoilZn                      2.482016e-02      7.131697e-01      9.716005e-01
## BinePerPlantAl              7.557688e-12      3.095598e-01      6.683713e-03
## BinePerPlantB               1.230547e-07      5.711819e-02      4.675423e-03
## BinePerPLantCa              1.748751e-05      2.703990e-05      4.214936e-09
## BinePerPlantCo              5.467521e-13      2.576205e-01      1.019607e-03
## BinePerPlantCu              1.278276e-02      2.779229e-05      9.537024e-04
## BinePerPlantFe              1.036222e-04      6.190605e-01      5.756854e-01
## BinePerPlantK               5.949431e-07      3.829003e-02      7.484684e-03
## BinePerPlantMg              7.450606e-20      1.531815e-01      4.468036e-01
## BinePerPlantMn              3.313433e-41      1.066050e-03      5.656707e-01
## BinePerPlantMo              1.046113e-03      1.382416e-28      4.871050e-02
## BinePerPlantNi              1.099958e-09      2.489262e-02      6.156684e-05
## BinePerPlantP               4.853696e-03      8.681941e-03      1.095302e-01
## BinePerPlantSe              1.807956e-02      5.869952e-08      3.474069e-05
## BinePerPLantZn              2.720050e-15      7.128445e-03      5.024936e-01
## SeedPerPlantAl              4.891145e-04      3.534788e-02      2.950835e-10
## SeedPerPlantB               9.703198e-05      1.484470e-02      1.167357e-10
## SeedPerPlantCa              6.158406e-04      5.377138e-03      2.160543e-20
## SeedPerPlantCo              5.244243e-04      1.865161e-02      4.210183e-22
## SeedPerPlantCu              7.853550e-02      1.855496e-04      1.627411e-48
## SeedPerPlantFe              5.067562e-03      4.109274e-03      9.647633e-16
## SeedPerPlantK               4.956039e-04      3.231362e-02      8.167548e-19
## SeedPerPlantMg              3.109761e-03      5.183100e-03      6.156120e-25
## SeedPerPlantMn              1.314070e-06      3.839980e-02      4.099175e-18
## SeedPerPlantMo              4.601903e-01      1.744204e-05      1.068660e-12
## SeedPerPlantNi              7.511733e-02      1.880940e-02      1.249156e-08
## SeedPerPlantP               1.277881e-01      1.656925e-04      2.006431e-66
## SeedPerPlantS               7.900690e-03      5.124053e-03      1.742165e-24
## SeedPerPlantZn              3.085178e-06      1.220906e-02      2.419725e-15
## BineSeedPerPlantAl          4.891145e-04      3.534788e-02      2.950835e-10
## BineSeedPerPlantB           6.838935e-12      2.674423e-01      3.347616e-03
## BineSeedPerPlantCa          2.561956e-08      2.272109e-02      4.493151e-05
## BineSeedPerPlantCo          1.290168e-05      2.795726e-05      4.301217e-10
## BineSeedPerPlantCu          2.974379e-02      2.131232e-04      1.094152e-47
## BineSeedPerPlantFe          3.959236e-03      2.356672e-03      6.009053e-16
## BineSeedPerPlantK           1.448511e-05      3.997748e-01      8.644770e-02
## BineSeedPerPlantMg          4.098104e-07      1.440534e-02      3.288007e-05
## BineSeedPerPlantMo          4.600609e-09      8.311037e-02      1.228439e-15
## BineSeedPerPlantNi          0.000000e+00      1.477261e-02      5.235828e-02
## BineSeedPerPlantP           1.477261e-02      0.000000e+00      1.291972e-04
## BineSeedPerPlantS           5.235828e-02      1.291972e-04      0.000000e+00
## BineSeedPerPlantS.1         7.313465e-04      1.167841e-03      1.327310e-04
## BineSeedPerPlantZn          3.065792e-06      1.065834e-02      2.103662e-15
##                       BineSeedPerPlantS.1 BineSeedPerPlantZn
## BineM                        1.259389e-08       2.061031e-07
## SeedM                        1.634457e-05       4.024267e-15
## BineSeedM                    1.719497e-07       9.105504e-13
## SeedN                        2.226735e-04       2.720896e-03
## SeedMOne                     3.917570e-02       4.436007e-11
## NodPerPlant                  2.731187e-03       3.699794e-01
## NodPerPlant.1                2.874298e-06       2.750395e-01
## Mic                          7.554777e-01       4.486380e-01
## Ves                          1.926021e-02       9.476208e-04
## Arb                          6.548575e-01       7.214189e-01
## pH                           1.990589e-01       8.215385e-01
## NitBine                      2.977540e-02       8.229743e-03
## Nit15                        3.804025e-03       2.048986e-06
## NitPerPlant                  8.221869e-10       2.134042e-04
## Nit15PerPlant                1.508917e-01       4.174821e-01
## NitSeed                      9.404080e-01       5.398152e-01
## NitSeed15                    2.525086e-02       5.651432e-09
## NitSeedPerPlant              5.608667e-05       4.220375e-13
## Nit15SeedPerPlant            1.637797e-04       2.844884e-08
## NitBineSeedPerPlant          7.635374e-06       3.095844e-13
## Nit15BineSeedPerPlant        1.684275e-04       4.160866e-05
## BineAl                       8.973166e-05       1.148247e-02
## BineB                        6.704614e-03       2.648363e-01
## BineCa                       4.830546e-01       3.450268e-01
## BineCo                       3.789503e-01       4.508500e-02
## BineCu                       3.282933e-01       9.230749e-05
## BineFe                       2.824139e-01       1.532696e-05
## BineK                        6.278937e-01       4.409206e-04
## BineMg                       1.380938e-02       2.134015e-03
## BineMn                       8.176992e-02       8.335079e-01
## BineMo                       7.135727e-01       5.130764e-01
## BineNi                       2.072960e-01       1.473284e-01
## BineP                        1.764761e-01       5.937701e-06
## BineS                        1.452706e-01       2.146551e-02
## BineZn                       2.746678e-01       1.807894e-03
## SeedAl                       7.658130e-03       6.838698e-05
## SeedB                        2.224796e-02       1.417213e-02
## SeedCo                       4.038238e-03       5.544330e-03
## SeedCu                       1.347683e-01       2.537736e-01
## SeedFe                       9.218634e-01       7.691099e-03
## SeedK                        7.400215e-02       1.413211e-03
## SeedMg                       1.797740e-01       4.007522e-03
## SeedMn                       5.704375e-01       2.014920e-04
## SeedMo                       3.795642e-01       3.291574e-01
## SeedNi                       9.997613e-01       8.061584e-01
## SeedP                        1.646707e-01       3.603128e-01
## SeedS                        3.234991e-02       6.598027e-06
## SeedZn                       6.547699e-01       1.918741e-05
## SoilAl                       7.361112e-03       8.990283e-01
## SoilB                        3.235260e-01       4.813199e-01
## SoilCa                       1.857784e-01       5.740379e-01
## SoilCo                       4.929595e-02       5.257763e-02
## SoilCu                       1.664041e-02       6.888830e-01
## SoilFe                       2.806303e-01       2.586698e-01
## SoilK                        2.031719e-02       1.856402e-09
## SoilMg                       1.930212e-02       8.855625e-10
## SoilMn                       4.293977e-02       6.522606e-01
## SoilMo                       5.433981e-03       6.713565e-01
## SoilNi                       3.240458e-02       5.331350e-02
## SoilP                        4.469016e-03       2.195612e-02
## SoilS                        1.308210e-02       9.670608e-01
## SoilZn                       3.934145e-01       3.392392e-01
## BinePerPlantAl               6.189441e-07       1.870429e-06
## BinePerPlantB                4.346652e-04       2.097793e-05
## BinePerPLantCa               1.879302e-08       2.722832e-10
## BinePerPlantCo               2.742161e-15       1.498783e-07
## BinePerPlantCu               1.662257e-22       1.500002e-04
## BinePerPlantFe               1.795715e-10       6.686021e-02
## BinePerPlantK                2.191824e-11       1.486716e-06
## BinePerPlantMg               7.488919e-07       1.801935e-03
## BinePerPlantMn               1.582239e-02       8.134682e-04
## BinePerPlantMo               3.803741e-02       4.162545e-01
## BinePerPlantNi               1.293593e-13       8.595082e-09
## BinePerPlantP                6.477525e-32       4.116353e-02
## BinePerPlantSe               5.071793e-12       1.243600e-05
## BinePerPLantZn               2.479607e-05       1.110610e-01
## SeedPerPlantAl               6.013653e-05       3.836152e-14
## SeedPerPlantB                2.511611e-06       3.624437e-18
## SeedPerPlantCa               1.159623e-03       5.530222e-19
## SeedPerPlantCo               3.087553e-06       6.773402e-19
## SeedPerPlantCu               3.263286e-04       4.214653e-16
## SeedPerPlantFe               7.084980e-04       5.666990e-20
## SeedPerPlantK                2.348773e-05       6.620705e-21
## SeedPerPlantMg               2.697607e-05       4.513109e-18
## SeedPerPlantMn               4.118352e-04       8.721458e-29
## SeedPerPlantMo               3.859254e-04       8.237542e-06
## SeedPerPlantNi               4.966608e-04       3.235042e-08
## SeedPerPlantP                8.022092e-04       6.799553e-14
## SeedPerPlantS                3.389345e-05       1.255461e-17
## SeedPerPlantZn               5.757811e-05      3.805594e-118
## BineSeedPerPlantAl           6.013653e-05       3.836152e-14
## BineSeedPerPlantB            3.483649e-07       4.645371e-07
## BineSeedPerPlantCa           1.090501e-04       3.317320e-08
## BineSeedPerPlantCo           9.592827e-09       2.668637e-11
## BineSeedPerPlantCu           5.504962e-05       1.635921e-17
## BineSeedPerPlantFe           1.749092e-04       1.911396e-20
## BineSeedPerPlantK            1.947766e-12       2.632179e-03
## BineSeedPerPlantMg           3.285893e-12       6.933492e-10
## BineSeedPerPlantMo           4.601787e-05       3.477427e-29
## BineSeedPerPlantNi           7.313465e-04       3.065792e-06
## BineSeedPerPlantP            1.167841e-03       1.065834e-02
## BineSeedPerPlantS            1.327310e-04       2.103662e-15
## BineSeedPerPlantS.1          0.000000e+00       4.502710e-05
## BineSeedPerPlantZn           4.502710e-05       0.000000e+00
library(ggplot2)
heatmaply::heatmaply(p,
    scale_fill_gradient_fun = ggplot2::scale_colour_gradientn(colours = c("blue", "red"),
    breaks = c(0.05),
    space = "Lab",
    oob = identity
    )
)
library(ggplot2)
heatmaply(p,
  scale_fill_gradient_fun =  ggplot2::scale_fill_gradientn(
    colours = c("red","white","blue"), 
    values = scales::rescale(c(0, 0.05,1)),
    breaks = c(0.05, 0.1),
    guide = "colorbar",
    limits = c(0 , 1)
  )
)
install.packages("BiocManager")
BiocManager::install("WGCNA") 

####WGCNA

# WGCNA
library(vegan)
library(WGCNA)
physeq <- ps.f.dec
sample_names(physeq)
sample_names(physeq) <- paste0(ps.f.dec@sam_data$Description, "_", stringr::str_split_fixed(sample_names(physeq), "elimov.", 2)[,2])
sample_names(physeq) %in% c("s8473_In_41", "s8473_In_Al_45")
physeq <- prune_samples(sample_names(physeq) != c("s8473_In_41", "s8473_In_Al_45"), physeq)
physeq <- prune_taxa(taxa_sums(physeq) > 10, physeq)
physeq@sam_data@row.names
physeq
physeq.var <- varstab(physeq)
otus <- veganifyOTU(physeq.var)
head(otus)
gsg = goodSamplesGenes(otus.d[-1], verbose = 3)
gsg
otus.d <- as.data.frame(otus)

sampleTree = hclust(dist(otus.d), method = "average");
sizeGrWindow(12,9)
par(cex = 0.6);
par(mar = c(0,4,2,0))
plot(sampleTree, main = "Sample clustering to detect outliers", sub="", xlab="", cex.lab = 1.5, cex.axis = 1.5, cex.main = 2)
metadata <- physeq@sam_data

OTUSamples = rownames(otus.d)
MetaSamples = rownames(metadata)
traitRows = match(OTUSamples, MetaSamples)
traitRows
datTraits = traitData[traitRows, -1];
rownames(datTraits) = traitData[traitRows, 1];
collectGarbage()

sampleTree2 = hclust(dist(otus.d), method = "average")
traitColors = numbers2colors(metadata[,5:111], signed = FALSE)
length(metadata)
View(data.frame(metadata))
metadata.little <- metadata
# small metadata?
enableWGCNAThreads()
powers = c(c(1:10), seq(from = 11, to=30, by=1))
sft = pickSoftThreshold(otus.d, powerVector = powers, verbose = 5, networkType = "signed")
sizeGrWindow(9, 5)
par(mfrow = c(1,2));
cex1 = 0.9;
plot(sft$fitIndices[,1], -sign(sft$fitIndices[,3])*sft$fitIndices[,2],
     xlab="Soft Threshold (power)",ylab="Scale Free Topology Model Fit,signed R^2",type="n",
     main = paste("Scale independence"));
text(sft$fitIndices[,1], -sign(sft$fitIndices[,3])*sft$fitIndices[,2],
     labels=powers,cex=cex1,col="red");
abline(h=0.8,col="red")
plot(sft$fitIndices[,1], sft$fitIndices[,5],
     xlab="Soft Threshold (power)",ylab="Mean Connectivity", type="n",
     main = paste("Mean connectivity"))
text(sft$fitIndices[,1], sft$fitIndices[,5], labels=powers, cex=cex1,col="red")
softPower = 17;
adjacency = adjacency(otus.d, power = softPower, type = "signed");
TOM = TOMsimilarity(adjacency, TOMType = "signed");
dissTOM = 1-TOM
TaxaTree = hclust(as.dist(dissTOM), method = "average");


TaxaTree = hclust(as.dist(dissTOM), method = "average");
  sizeGrWindow(12,9)
plot(TaxaTree, xlab="", sub="", main = "Taxa clustering on TOM-based dissimilarity",
     labels = FALSE, hang = 0.04);
minModuleSize = 50;
dynamicMods = cutreeDynamic(dendro = TaxaTree, distM = dissTOM,
                            deepSplit = 2, pamRespectsDendro = FALSE,
                            minClusterSize = minModuleSize);
dynamicColors = labels2colors(dynamicMods)
table(dynamicColors)
sizeGrWindow(8,6)
plotDendroAndColors(TaxaTree, dynamicColors, "Dynamic Tree Cut",
                    dendroLabels = FALSE, hang = 0.03,
                    addGuide = TRUE, guideHang = 0.05,
                    main = "Taxa dendrogram and module colors")

MEList = moduleEigengenes(otus.d, colors = dynamicColors)

MEs = MEList$eigengenes
MEDiss = 1-cor(MEs)
METree = hclust(as.dist(MEDiss), method = "average")
sizeGrWindow(7, 6)
plot(METree, main = "Clustering of module eigengenes",
     xlab = "", sub = "")
MEDissThres = 0.30
abline(h=MEDissThres, col = "red")
merge = mergeCloseModules(otus.d, dynamicColors, cutHeight = MEDissThres, verbose = 3)
mergedColors = merge$colors;
mergedMEs = merge$newMEs;
sizeGrWindow(12, 9)
mergedColors
plotDendroAndColors(TaxaTree, cbind(dynamicColors, mergedColors),
                    c("Dynamic Tree Cut", "Merged dynamic"),
                    dendroLabels = FALSE, hang = 0.03,
                    addGuide = TRUE, guideHang = 0.05)
moduleColors = mergedColors
colorOrder = c("grey", standardColors(50));
moduleLabels = match(moduleColors, colorOrder)-1;
MEs = mergedMEs;
save(MEs, moduleLabels, moduleColors, TaxaTree, file = "Monterey-networkConstruction-stepByStep.RData")
nTaxa = ncol(otus.d);
nSamples = nrow(otus.d);
MEs0 = moduleEigengenes(otus.d, moduleColors)$eigengenes
MEs = orderMEs(MEs0)
moduleTraitCor = cor(MEs, metadata, use = "p");
moduleTraitPvalue = corPvalueStudent(moduleTraitCor, nSamples);
sizeGrWindow(10,6)

textMatrix = paste(signif(moduleTraitCor, 2), "\n(",
                   signif(moduleTraitPvalue, 1), ")", sep = "");
dim(textMatrix) = dim(moduleTraitCor)
par(mar = c(6, 8.5, 3, 3));

labeledHeatmap(Matrix = moduleTraitCor,
               xLabels = names(metadata),
               yLabels = names(MEs),
               ySymbols = names(MEs),
               colorLabels = FALSE,
               colors = greenWhiteRed(50),
               textMatrix = textMatrix,
               setStdMargins = FALSE,
               cex.text = 0.5,
               zlim = c(-1,1),
               main = paste("Module-trait relationships"))

colnames(met.d)
length(colnames(met.d))
met.d <- data.frame(metadata)
met.d.num <- metadata[,6:110]
met.d.num.scaled <- scale(met.d.num)
View(met.d.num.scaled)
# nmds for factors?
dist.met.scaled <- vegdist(t(met.d.num.scaled), method = "euclidean", na.rm = TRUE)
dist.met.scaled
met.nmds <-
  metaMDS(t(met.d.num.scaled),
          distance = "euclidean",na.rm = TRUE,
          k = 3,
          maxit = 999, 
          trymax = 500,
          wascores = TRUE)
dev.off()
stressplot(met.nmds)
plot(met.nmds, "sites")
orditorp(met.nmds, "sites")
# scaled - shit
# unscaled - not work at all

res <- pcoa(dist.met.scaled)
res$values
biplot(res)

# pcoa -same shit
hclust.met <-  hclust(dist.met.scaled)
plot(hclust.met, main = "metadata scaled euclidian")

# 
sampleTree2 <-  hclust(dist(met.d.num), method = "average")
traitColors = numbers2colors(met.d.num, signed = FALSE);
plotDendroAndColors(sampleTree2, traitColors,
                    groupLabels = names(met.d.num),
                    main = "Sample dendrogram and trait heatmap")
View(met.d)