belimov Al
GrGladkov
06 03 2020
Import phyloseq object
rds format
library(phyloseq)
library(tidyverse)
ps <- readRDS(file = "~/storage/al_R/rf/ps.f.dec.rds")nice rownames
sample_names(ps) <- paste0(ps@sam_data$Description, "_", stringr::str_split_fixed(sample_names(ps), "elimov.", 2)[,2])
ps@sam_data## Filename Description Plant Inoculation Al BineM
## s1903_In_10 belimov-10_S146 s1903_In s1903 + - 5.405000
## s1903_In_11 belimov-11_S147 s1903_In s1903 + - 5.205000
## s1903_In_12 belimov-12_S148 s1903_In s1903 + - 6.450000
## s1903_In_Al_13 belimov-13_S149 s1903_In_Al s1903 + + 6.480000
## s1903_In_Al_14 belimov-14_S150 s1903_In_Al s1903 + + 6.280000
## s1903_In_Al_15 belimov-15_S151 s1903_In_Al s1903 + + 5.010000
## s1903_In_Al_16 belimov-16_S152 s1903_In_Al s1903 + + 5.730000
## s7307_17 belimov-17_S153 s7307 s7307 - - 5.483333
## s7307_18 belimov-18_S154 s7307 s7307 - - 7.340000
## s7307_19 belimov-19_S155 s7307 s7307 - - 6.860000
## s1903_1 belimov-1_S137 s1903 s1903 - - 4.405000
## s7307_20 belimov-20_S156 s7307 s7307 - - 5.250000
## s7307_Al_21 belimov-21_S157 s7307_Al s7307 - + 7.345000
## s7307_Al_22 belimov-22_S158 s7307_Al s7307 - + 4.980000
## s7307_Al_23 belimov-23_S159 s7307_Al s7307 - + 5.750000
## s7307_Al_24 belimov-24_S160 s7307_Al s7307 - + 5.830000
## s7307_In_25 belimov-25_S161 s7307_In s7307 + - 7.610000
## s7307_In_26 belimov-26_S162 s7307_In s7307 + - 7.490000
## s7307_In_27 belimov-27_S163 s7307_In s7307 + - 8.110000
## s7307_In_28 belimov-28_S164 s7307_In s7307 + - 6.945000
## s7307_In_Al_29 belimov-29_S165 s7307_In_Al s7307 + + 6.270000
## s1903_2 belimov-2_S138 s1903 s1903 - - 5.250000
## s7307_In_Al_30 belimov-30_S166 s7307_In_Al s7307 + + 7.295000
## s7307_In_Al_31 belimov-31_S167 s7307_In_Al s7307 + + 6.535000
## s7307_In_Al_32 belimov-32_S168 s7307_In_Al s7307 + + 7.080000
## s8473_33 belimov-33_S169 s8473 s8473 - - 2.940000
## s8473_34 belimov-34_S170 s8473 s8473 - - 2.755000
## s8473_35 belimov-35_S171 s8473 s8473 - - 2.680000
## s8473_36 belimov-36_S172 s8473 s8473 - - 3.115000
## s8473_Al_37 belimov-37_S173 s8473_Al s8473 - + 2.590000
## s8473_Al_38 belimov-38_S174 s8473_Al s8473 - + 2.255000
## s8473_Al_39 belimov-39_S175 s8473_Al s8473 - + 2.040000
## s1903_3 belimov-3_S139 s1903 s1903 - - 5.185000
## s8473_Al_40 belimov-40_S176 s8473_Al s8473 - + 2.115000
## s8473_In_41 belimov-41_S177 s8473_In s8473 + - 3.420000
## s8473_In_42 belimov-42_S178 s8473_In s8473 + - 2.815000
## s8473_In_43 belimov-43_S179 s8473_In s8473 + - 2.825000
## s8473_In_44 belimov-44_S180 s8473_In s8473 + - 3.555000
## s8473_In_Al_45 belimov-45_S181 s8473_In_Al s8473 + + 2.265000
## s8473_In_Al_46 belimov-46_S182 s8473_In_Al s8473 + + 2.380000
## s8473_In_Al_47 belimov-47_S183 s8473_In_Al s8473 + + 2.725000
## s8473_In_Al_48 belimov-48_S184 s8473_In_Al s8473 + + 3.190000
## s8353_49 belimov-49_S185 s8353 s8353 - - 2.890000
## s1903_4 belimov-4_S140 s1903 s1903 - - 5.305000
## s8353_50 belimov-50_S186 s8353 s8353 - - 3.265000
## s8353_51 belimov-51_S187 s8353 s8353 - - 3.315000
## s8353_52 belimov-52_S188 s8353 s8353 - - 3.360000
## s8353_Al_53 belimov-53_S189 s8353_Al s8353 - + 2.635000
## s8353_Al_54 belimov-54_S190 s8353_Al s8353 - + 2.225000
## s8353_Al_55 belimov-55_S191 s8353_Al s8353 - + 2.010000
## s8353_Al_56 belimov-56_S192 s8353_Al s8353 - + 2.745000
## s8353_In_57 belimov-57_S193 s8353_In s8353 + - 3.330000
## s8353_In_58 belimov-58_S194 s8353_In s8353 + - 3.040000
## s8353_In_59 belimov-59_S195 s8353_In s8353 + - 3.290000
## s1903_Al_5 belimov-5_S141 s1903_Al s1903 - + 4.450000
## s8353_In_60 belimov-60_S196 s8353_In s8353 + - 3.660000
## s8353_In_Al_61 belimov-61_S197 s8353_In_Al s8353 + + 2.805000
## s8353_In_Al_62 belimov-62_S198 s8353_In_Al s8353 + + 2.975000
## s1903_Al_6 belimov-6_S142 s1903_Al s1903 - + 3.585000
## s1903_Al_7 belimov-7_S143 s1903_Al s1903 - + 4.335000
## s1903_Al_8 belimov-8_S144 s1903_Al s1903 - + 4.730000
## s1903_In_9 belimov-9_S145 s1903_In s1903 + - 6.510000
## SeedM BineSeedM SeedN SeedMOne NodPerPlant NodPerPlant.1
## s1903_In_10 4.735000 10.140 39 121.41026 54 21.00
## s1903_In_11 4.070000 9.275 38 107.10526 85 20.70
## s1903_In_12 5.470000 11.920 36 151.94444 100 30.00
## s1903_In_Al_13 4.280000 10.760 31 138.06452 107 25.00
## s1903_In_Al_14 5.025000 11.305 38 132.23684 118 36.23
## s1903_In_Al_15 4.510000 9.520 39 115.64103 71 24.40
## s1903_In_Al_16 4.560000 10.290 33 138.18182 87 27.00
## s7307_17 9.456667 14.940 36 262.68519 64 40.40
## s7307_18 9.185000 16.525 38 241.71053 37 14.80
## s7307_19 10.075000 16.935 41 245.73171 132 65.90
## s1903_1 4.660000 9.065 40 116.50000 45 11.80
## s7307_20 6.890000 12.140 28 246.07143 88 40.70
## s7307_Al_21 6.420000 13.765 25 256.80000 189 38.20
## s7307_Al_22 7.255000 12.235 30 241.83333 76 28.10
## s7307_Al_23 5.890000 11.640 29 203.10345 99 22.50
## s7307_Al_24 6.510000 12.340 32 203.43750 79 23.70
## s7307_In_25 9.125000 16.735 35 260.71429 110 58.20
## s7307_In_26 10.345000 17.835 37 279.59459 122 39.00
## s7307_In_27 10.110000 18.220 37 273.24324 108 67.40
## s7307_In_28 8.650000 15.595 33 262.12121 98 41.80
## s7307_In_Al_29 8.055000 14.325 33 244.09091 119 17.30
## s1903_2 5.410000 10.660 43 125.81395 12 5.10
## s7307_In_Al_30 6.125000 13.420 28 218.75000 238 97.60
## s7307_In_Al_31 6.740000 13.275 28 240.71429 184 45.00
## s7307_In_Al_32 6.080000 13.160 29 209.65517 281 30.70
## s8473_33 2.305000 5.245 23 100.21739 131 34.60
## s8473_34 1.425000 4.180 17 83.82353 169 30.00
## s8473_35 1.665000 4.345 16 104.06250 227 35.30
## s8473_36 2.175000 5.290 22 98.86364 176 33.30
## s8473_Al_37 1.205000 3.795 11 109.54545 146 25.90
## s8473_Al_38 1.445000 3.700 16 90.31250 101 21.40
## s8473_Al_39 1.410000 3.450 15 94.00000 75 16.20
## s1903_3 3.720000 8.905 28 132.85714 36 11.00
## s8473_Al_40 1.205000 3.320 13 92.69231 140 33.30
## s8473_In_41 3.920000 7.340 40 98.00000 169 52.30
## s8473_In_42 2.465000 5.280 28 88.03571 240 36.50
## s8473_In_43 3.130000 5.955 25 125.20000 269 37.50
## s8473_In_44 3.015000 6.570 30 100.50000 275 58.00
## s8473_In_Al_45 2.045000 4.310 20 102.25000 244 50.00
## s8473_In_Al_46 2.155000 4.535 21 102.61905 201 37.00
## s8473_In_Al_47 2.025000 4.750 21 96.42857 246 41.80
## s8473_In_Al_48 2.090000 5.280 22 95.00000 178 45.00
## s8353_49 4.110000 7.000 19 216.31579 20 11.80
## s1903_4 4.025000 9.330 41 98.17073 39 11.60
## s8353_50 4.160000 7.425 17 244.70588 33 10.00
## s8353_51 5.055000 8.370 20 252.75000 18 4.20
## s8353_52 6.050000 9.410 23 263.04348 53 14.60
## s8353_Al_53 4.670000 7.305 20 233.50000 14 4.20
## s8353_Al_54 3.600000 5.825 14 257.14286 8 4.00
## s8353_Al_55 2.935000 4.945 13 225.76923 12 7.00
## s8353_Al_56 4.265000 7.010 17 250.88235 10 2.70
## s8353_In_57 5.650000 8.980 22 256.81818 90 25.00
## s8353_In_58 5.115000 8.155 20 255.75000 82 19.50
## s8353_In_59 5.285000 8.575 20 264.25000 127 30.80
## s1903_Al_5 3.820000 8.270 33 115.75758 8 2.00
## s8353_In_60 6.780000 10.440 26 260.76923 30 16.00
## s8353_In_Al_61 4.750000 7.555 18 263.88889 26 8.70
## s8353_In_Al_62 4.890000 7.865 20 244.50000 30 11.20
## s1903_Al_6 3.750000 7.335 32 117.18750 7 3.00
## s1903_Al_7 4.110000 8.445 36 114.16667 20 5.80
## s1903_Al_8 3.810000 8.540 30 127.00000 8 3.00
## s1903_In_9 5.980000 12.490 50 119.60000 65 23.00
## Mic Ves Arb pH NitBine Nit15 NitPerPlant
## s1903_In_10 24.300 10.000 4.00 7.18 7.404185 4.390080 40.01962
## s1903_In_11 11.300 9.300 7.30 7.30 7.695128 4.427031 40.05314
## s1903_In_12 60.700 28.700 36.00 6.99 7.732603 4.442804 49.87529
## s1903_In_Al_13 2.000 14.700 4.00 5.79 9.319207 2.850500 60.38846
## s1903_In_Al_14 2.300 6.000 3.00 5.64 10.447947 2.747578 65.61311
## s1903_In_Al_15 12.300 1.300 18.70 5.16 10.286151 2.823908 51.53362
## s1903_In_Al_16 3.700 4.700 0.70 5.76 9.977519 2.757287 57.17118
## s7307_17 45.300 35.300 8.70 6.64 6.439298 2.011899 35.30882
## s7307_18 31.300 25.300 10.70 7.27 6.205646 2.031352 45.54944
## s7307_19 18.000 4.700 9.30 6.84 6.526465 2.038802 44.77155
## s1903_1 45.000 14.700 27.30 7.52 7.680124 3.510780 33.83095
## s7307_20 24.000 4.000 10.70 7.15 6.570565 1.998223 34.49547
## s7307_Al_21 34.000 9.300 17.30 5.67 7.497540 2.647403 55.06943
## s7307_Al_22 64.700 17.300 57.30 5.68 6.966506 2.625018 34.69320
## s7307_Al_23 49.000 18.700 34.70 5.49 7.259171 2.600545 41.74023
## s7307_Al_24 40.300 6.000 38.00 5.39 6.813653 2.585428 39.72360
## s7307_In_25 32.000 17.300 19.30 7.46 5.338359 1.986242 40.62492
## s7307_In_26 50.000 32.700 24.70 6.93 5.311623 2.022861 39.78406
## s7307_In_27 36.300 14.000 23.30 7.27 5.676398 2.023628 46.03559
## s7307_In_28 38.000 12.700 16.70 7.68 6.078722 1.963812 42.21672
## s7307_In_Al_29 67.000 47.300 32.70 5.69 7.056575 2.536297 44.24472
## s1903_2 85.000 43.300 68.00 7.52 6.626483 3.507854 34.78904
## s7307_In_Al_30 61.300 38.000 47.30 5.75 7.408234 2.553589 54.04307
## s7307_In_Al_31 49.700 23.300 35.30 5.44 6.929861 2.576971 45.28664
## s7307_In_Al_32 71.700 60.000 48.00 5.38 7.022268 2.599355 49.71766
## s8473_33 80.000 16.000 70.00 7.02 12.933638 4.169131 38.02490
## s8473_34 66.300 8.000 67.30 6.85 12.153975 4.158317 33.48420
## s8473_35 59.700 5.300 48.70 7.58 11.903076 4.181326 31.90024
## s8473_36 44.000 2.000 25.30 6.97 12.785893 4.184960 39.82806
## s8473_Al_37 80.000 18.700 67.30 5.76 10.020194 4.353843 25.95230
## s8473_Al_38 69.000 19.300 63.30 5.97 10.199323 4.384259 22.99947
## s8473_Al_39 63.000 28.000 44.70 5.73 10.768318 4.353593 21.96737
## s1903_3 59.000 22.700 36.70 7.49 7.094977 3.495322 36.78746
## s8473_Al_40 57.000 13.300 39.30 6.03 10.365260 4.363636 21.92252
## s8473_In_41 13.000 7.300 13.30 7.12 10.473632 3.408149 35.81982
## s8473_In_42 74.000 21.300 74.00 7.56 8.787095 3.485019 24.73567
## s8473_In_43 41.300 11.300 20.70 7.34 8.761855 3.417351 24.75224
## s8473_In_44 59.300 22.700 32.00 6.93 12.239055 3.355456 43.50984
## s8473_In_Al_45 44.300 14.700 48.00 5.90 8.736789 4.421779 19.78883
## s8473_In_Al_46 34.000 10.700 36.00 5.67 12.561059 4.462853 29.89532
## s8473_In_Al_47 67.300 24.700 54.00 5.55 9.144922 4.489856 24.91991
## s8473_In_Al_48 51.000 10.000 34.70 5.73 8.756356 4.450651 27.93278
## s8353_49 53.700 20.700 41.30 7.43 13.642539 5.622016 39.42694
## s1903_4 34.700 16.000 22.70 7.31 7.062059 3.501867 37.46422
## s8353_50 48.000 6.700 46.70 7.45 13.219376 5.606359 43.16126
## s8353_51 45.000 15.000 30.00 7.59 13.273470 5.577243 44.00155
## s8353_52 54.000 20.700 47.30 6.96 13.497544 5.583323 45.35175
## s8353_Al_53 44.000 8.000 25.30 5.69 13.251753 3.354965 34.91837
## s8353_Al_54 22.000 5.300 20.00 5.61 12.305034 3.369038 27.37870
## s8353_Al_55 50.700 5.300 38.70 5.62 13.376507 3.348624 26.88678
## s8353_Al_56 33.000 10.000 18.00 5.49 13.561162 3.332240 37.22539
## s8353_In_57 74.700 30.700 57.30 7.07 13.237535 2.727507 44.08099
## s8353_In_58 74.300 42.000 63.30 7.48 13.256106 2.726922 40.29856
## s8353_In_59 84.000 28.000 70.70 6.89 13.124471 2.727272 43.17951
## s1903_Al_5 5.700 1.300 3.30 5.92 7.916694 3.263927 35.22929
## s8353_In_60 81.000 17.300 70.70 7.30 13.590253 2.715956 49.74033
## s8353_In_Al_61 73.000 32.700 54.70 5.64 13.407305 3.110316 37.60749
## s8353_In_Al_62 71.500 41.000 49.00 5.84 14.007154 3.101880 41.67128
## s1903_Al_6 4.075 6.675 4.85 5.64 7.631617 3.250396 27.35935
## s1903_Al_7 2.000 3.000 2.00 5.50 8.199655 3.250767 35.54550
## s1903_Al_8 3.000 4.000 0.00 5.47 8.003643 3.248612 37.85723
## s1903_In_9 57.700 45.300 28.00 7.62 7.481808 4.501045 48.70657
## Nit15PerPlant NitSeed NitSeed15 NitSeedPerPlant
## s1903_In_10 1.7568933 28.60887 2.782412 135.46301
## s1903_In_11 1.7731651 24.34507 2.973828 99.08445
## s1903_In_12 2.2158613 30.38750 2.130032 166.21961
## s1903_In_Al_13 1.7213731 39.18761 1.738660 167.72298
## s1903_In_Al_14 1.8027713 33.56791 1.777165 168.67877
## s1903_In_Al_15 1.4552619 40.70551 2.376448 183.58186
## s1903_In_Al_16 1.5763733 33.74961 2.488498 153.89821
## s7307_17 0.7103778 33.49280 1.301300 316.73021
## s7307_18 0.9252696 31.40309 1.379876 288.43742
## s7307_19 0.9128033 37.67156 1.075136 379.54102
## s1903_1 1.1877301 26.41285 2.956314 123.08387
## s7307_20 0.6892961 32.00000 1.500000 220.48000
## s7307_Al_21 1.4579098 30.99782 2.369572 199.00603
## s7307_Al_22 0.9107028 32.49857 2.221652 235.77714
## s7307_Al_23 1.0854736 31.12105 3.006902 183.30301
## s7307_Al_24 1.0270250 27.47089 1.932198 178.83551
## s7307_In_25 0.8069091 32.25249 1.495332 294.30398
## s7307_In_26 0.8047762 33.31538 1.328756 344.64759
## s7307_In_27 0.9315891 34.81787 1.267678 352.00865
## s7307_In_28 0.8290571 30.63483 1.810808 264.99130
## s7307_In_Al_29 1.1221776 29.87509 1.928525 240.64389
## s1903_2 1.2203486 27.54488 2.457658 149.01781
## s7307_In_Al_30 1.3800378 28.31662 2.418461 173.43932
## s7307_In_Al_31 1.1670236 31.12582 2.027969 209.78800
## s7307_In_Al_32 1.2923383 29.87783 2.969308 181.65719
## s8473_33 1.5853077 31.89454 5.003260 73.51692
## s8473_34 1.3923792 31.34906 5.601521 44.67241
## s8473_35 1.3338532 29.18684 4.927035 48.59608
## s8473_36 1.6667885 25.14507 4.886217 54.69053
## s8473_Al_37 1.1299225 34.76650 3.328457 41.89364
## s8473_Al_38 1.0083565 33.08799 4.361988 47.81214
## s8473_Al_39 0.9563698 33.86392 3.857503 47.74812
## s1903_3 1.2858401 33.40278 2.244157 124.25834
## s8473_Al_40 0.9566192 30.36762 4.917908 36.59298
## s8473_In_41 1.2207928 33.98304 2.338680 133.21350
## s8473_In_42 0.8620429 29.70248 4.363844 73.21661
## s8473_In_43 0.8458709 31.52073 4.055988 98.65989
## s8473_In_44 1.4599536 26.51261 5.178503 79.93553
## s8473_In_Al_45 0.8750182 27.82093 5.348780 56.89381
## s8473_In_Al_46 1.3341842 32.03036 6.010785 69.02542
## s8473_In_Al_47 1.1188682 37.66116 5.300549 76.26385
## s8473_In_Al_48 1.2431904 32.61339 5.480025 68.16199
## s8353_49 2.2165887 33.63205 3.856533 138.22774
## s1903_4 1.3119473 24.09251 2.759202 96.97235
## s8353_50 2.4197753 34.11133 3.356879 141.90313
## s8353_51 2.4540736 36.22460 2.300119 183.11536
## s8353_52 2.5321348 36.72984 2.803752 222.21553
## s8353_Al_53 1.1714991 33.67798 2.612349 157.27616
## s8353_Al_54 0.9223989 36.90091 2.008085 132.84329
## s8353_Al_55 0.9003371 33.25431 2.776216 97.60140
## s8353_Al_56 1.2404393 37.97103 1.715371 161.94643
## s8353_In_57 1.2023121 38.50141 1.780533 217.53294
## s8353_In_58 1.0989104 38.64386 1.816454 197.66336
## s8353_In_59 1.1776226 41.03987 1.632877 216.89569
## s1903_Al_5 1.1498583 28.31992 2.915068 108.18209
## s8353_In_60 1.3509254 36.78124 2.059271 249.37682
## s8353_In_Al_61 1.1697118 38.37541 2.433096 182.28317
## s8353_In_Al_62 1.2925932 39.98039 1.928854 195.50412
## s1903_Al_6 0.8892871 34.09451 3.101615 127.85439
## s1903_Al_7 1.1555015 33.89367 2.582560 139.30298
## s1903_Al_8 1.2298345 35.60158 2.291928 135.64204
## s1903_In_9 2.1923047 28.95558 2.186212 173.15434
## Nit15SeedPerPlant NitBineSeedPerPlant Nit15BineSeedPerPlant
## s1903_In_10 3.769140 175.48263 5.526033
## s1903_In_11 2.946600 139.13759 4.719766
## s1903_In_12 3.540531 216.09490 5.756392
## s1903_In_Al_13 2.916133 228.11144 4.637506
## s1903_In_Al_14 2.997700 234.29187 4.800471
## s1903_In_Al_15 4.362728 235.11547 5.817990
## s1903_In_Al_16 3.829755 211.06939 5.406128
## s7307_17 4.121609 352.03903 4.831986
## s7307_18 3.980078 333.98687 4.905348
## s7307_19 4.080582 424.31257 4.993385
## s1903_1 3.638745 156.91482 4.826475
## s7307_20 3.307200 254.97547 3.996496
## s7307_Al_21 4.715591 254.07546 6.173501
## s7307_Al_22 5.238149 270.47034 6.148851
## s7307_Al_23 5.511741 225.04324 6.597215
## s7307_Al_24 3.455457 218.55911 4.482482
## s7307_In_25 4.400823 334.92889 5.207732
## s7307_In_26 4.579526 384.43165 5.384302
## s7307_In_27 4.462336 398.04424 5.393925
## s7307_In_28 4.798484 307.20802 5.627541
## s7307_In_Al_29 4.640879 284.88861 5.763056
## s1903_2 3.662349 183.80684 4.882697
## s7307_In_Al_30 4.194562 227.48239 5.574599
## s7307_In_Al_31 4.254436 255.07464 5.421460
## s7307_In_Al_32 5.393961 231.37485 6.686300
## s8473_33 3.678242 111.54182 5.263550
## s8473_34 2.502334 78.15661 3.894714
## s8473_35 2.394346 80.49633 3.728199
## s8473_36 2.672298 94.51858 4.339086
## s8473_Al_37 1.394412 67.84594 2.524334
## s8473_Al_38 2.085560 70.81161 3.093916
## s8473_Al_39 1.841885 69.71549 2.798255
## s1903_3 2.788552 161.04580 4.074392
## s8473_Al_40 1.799609 58.51550 2.756228
## s8473_In_41 3.115437 169.03332 4.336230
## s8473_In_42 3.195059 97.95228 4.057102
## s8473_In_43 4.001633 123.41213 4.847504
## s8473_In_44 4.139464 123.44537 5.599418
## s8473_In_Al_45 3.043125 76.68264 3.918143
## s8473_In_Al_46 4.148970 98.92074 5.483154
## s8473_In_Al_47 4.042403 101.18376 5.161271
## s8473_In_Al_48 3.735294 96.09477 4.978484
## s8353_49 5.330799 177.65468 7.547387
## s1903_4 2.675663 134.43657 3.987610
## s8353_50 4.763517 185.06439 7.183292
## s8353_51 4.211871 227.11692 6.665944
## s8353_52 6.230372 267.56728 8.762507
## s8353_Al_53 4.108602 192.19453 5.280101
## s8353_Al_54 2.667606 160.22199 3.590005
## s8353_Al_55 2.709625 124.48818 3.609962
## s8353_Al_56 2.777982 199.17182 4.018421
## s8353_In_57 3.873246 261.61393 5.075558
## s8353_In_58 3.590463 237.96192 4.689374
## s8353_In_59 3.541640 260.07520 4.719262
## s1903_Al_5 3.153582 143.41138 4.303440
## s8353_In_60 5.135345 299.11715 6.486270
## s8353_In_Al_61 4.435126 219.89067 5.604837
## s8353_In_Al_62 3.770989 237.17540 5.063582
## s1903_Al_6 3.965551 155.21374 4.854838
## s1903_Al_7 3.597583 174.84848 4.753084
## s1903_Al_8 3.108818 173.49927 4.338652
## s1903_In_9 3.785522 221.86091 5.977826
## BineAl BineB BineCa BineCo BineCu BineFe
## s1903_In_10 136.3636 12.914714 33739.46 4.948454 22.74602 119.12840
## s1903_In_11 130.7978 14.916512 33395.18 4.925788 22.43043 111.79035
## s1903_In_12 153.5817 13.734479 35816.62 5.329513 23.78223 120.54441
## s1903_In_Al_13 184.3023 13.158915 33720.93 6.337209 21.83140 154.27326
## s1903_In_Al_14 160.0000 15.922705 35362.32 6.376812 22.17391 155.56522
## s1903_In_Al_15 170.0000 14.430622 37607.66 6.803828 24.05742 164.69856
## s1903_In_Al_16 163.4615 11.886447 30769.23 5.851648 20.19231 131.51099
## s7307_17 145.8416 8.693069 30891.09 4.574257 15.98020 77.27794
## s7307_18 147.3088 7.913126 31161.47 4.560907 15.15581 75.71707
## s7307_19 119.7812 8.003646 31996.35 4.512306 14.95898 83.23047
## s1903_1 150.0000 10.729783 30473.37 4.822485 20.00000 132.86982
## s7307_20 116.3142 9.546828 33232.63 4.561934 15.46828 86.98807
## s7307_Al_21 157.4056 12.178122 31364.96 5.837367 17.13456 107.07648
## s7307_Al_22 144.0553 11.133641 28755.76 5.529954 16.17512 100.56221
## s7307_Al_23 167.0254 12.504892 31409.00 6.076321 17.87671 146.38943
## s7307_Al_24 167.8503 14.184261 32533.59 6.190019 18.10940 115.94050
## s7307_In_25 112.6074 7.440306 24813.75 4.928367 19.16905 122.88119
## s7307_In_26 106.8293 6.341463 25492.68 4.682927 19.22927 125.41076
## s7307_In_27 115.4291 7.232401 29218.90 5.004822 22.91225 91.25798
## s7307_In_28 122.5646 8.230616 31908.55 5.457256 21.85885 91.45015
## s7307_In_Al_29 168.1010 13.826006 32553.79 6.061740 17.79233 121.71188
## s1903_2 163.0725 11.526718 34351.15 5.238550 21.95611 125.67748
## s7307_In_Al_30 165.5172 13.869732 33908.05 6.293103 17.93103 114.56897
## s7307_In_Al_31 155.9659 12.007576 30965.91 5.937500 17.64205 103.60795
## s7307_In_Al_32 151.7308 11.807692 29711.54 5.769231 16.38462 98.85577
## s8473_33 184.7009 14.131054 29914.53 6.324786 34.26104 117.86325
## s8473_34 154.2373 13.540490 30508.47 6.271186 27.14958 115.73446
## s8473_35 187.0909 13.527273 29727.27 6.272727 26.95055 125.37273
## s8473_36 153.9654 15.113947 29535.10 6.153145 31.04683 122.16044
## s8473_Al_37 198.4230 16.307978 27077.92 6.957328 29.77737 218.65492
## s8473_Al_38 230.6422 17.855179 29697.53 7.314390 31.89734 202.30064
## s8473_Al_39 234.9862 16.220472 26692.91 6.938976 30.11811 201.87992
## s1903_3 152.0270 9.536680 28957.53 4.720077 19.34363 139.19884
## s8473_Al_40 220.0000 16.269336 26724.29 6.960874 30.57325 201.10100
## s8473_In_41 170.0000 21.554702 32533.59 9.472169 38.17664 325.44146
## s8473_In_42 174.6943 21.335842 24412.04 7.422389 38.13559 257.58231
## s8473_In_43 168.6813 18.937729 24120.88 7.252747 37.90909 263.10440
## s8473_In_44 178.6417 12.497704 43526.17 11.652893 37.73929 242.06612
## s8473_In_Al_45 172.1189 18.005753 35666.35 8.082454 31.63950 313.52828
## s8473_In_Al_46 201.0027 18.577940 31996.35 7.711942 30.62899 226.90064
## s8473_In_Al_47 195.0000 19.215311 33301.44 7.952153 31.00478 258.57416
## s8473_In_Al_48 190.5591 18.972477 33577.98 7.954128 31.37615 264.41284
## s8353_49 201.3121 21.744142 61012.18 7.703843 30.36551 130.93721
## s1903_4 146.3908 10.856593 29451.40 4.677575 19.60539 129.26853
## s8353_50 182.1033 26.180812 57564.58 7.278598 29.05904 117.26015
## s8353_51 203.0986 21.796244 61408.45 7.577465 31.26761 150.61972
## s8353_52 245.5535 24.010889 55807.62 7.159710 29.40109 122.96733
## s8353_Al_53 240.3285 30.182482 61587.59 8.622263 27.91971 157.85584
## s8353_Al_54 240.4050 30.356798 61620.06 8.852459 28.87175 166.83703
## s8353_Al_55 261.7261 32.251407 64727.95 9.174484 29.54972 185.37523
## s8353_Al_56 253.6893 31.048544 63786.41 9.000000 28.68932 163.31068
## s8353_In_57 186.2162 22.414414 60810.81 7.108108 30.81081 152.08108
## s8353_In_58 189.1544 23.235294 62867.65 7.334559 31.70956 139.99081
## s8353_In_59 188.5308 22.729858 63412.32 7.450237 31.56398 135.27014
## s1903_Al_5 172.0260 13.921933 30669.14 5.966543 18.76394 130.67844
## s8353_In_60 197.8664 23.265306 64007.42 7.374768 32.00371 152.69944
## s8353_In_Al_61 234.5304 29.263352 61049.72 8.618785 28.17680 161.51934
## s8353_In_Al_62 237.7691 29.432485 60763.21 8.953033 29.23679 169.57926
## s1903_Al_6 160.3989 15.840456 30769.23 5.868946 18.54701 127.26496
## s1903_Al_7 196.1219 14.016620 32963.99 6.204986 19.97230 168.61496
## s1903_Al_8 194.7615 13.826006 30589.34 6.005613 18.99906 172.50702
## s1903_In_9 148.7512 14.690102 32747.46 4.912118 22.17391 134.51434
## BineK BineMg BineMn BineMo BineNi BineP
## s1903_In_10 12764.761 4133.083 25.33271 18.078725 6.579194 9373.102
## s1903_In_11 12578.850 4063.080 24.74026 17.671614 6.233766 9138.312
## s1903_In_12 13524.355 4355.301 26.87679 19.169054 6.790831 9781.375
## s1903_In_Al_13 12325.581 6104.651 64.53488 4.331395 7.470930 10068.895
## s1903_In_Al_14 12579.710 6289.855 66.66667 4.434783 7.304348 10445.507
## s1903_In_Al_15 13779.904 6717.703 71.48325 4.794258 7.751196 11379.043
## s1903_In_Al_16 11978.022 5659.341 57.69231 4.065934 6.620879 9433.242
## s7307_17 10366.337 2738.614 17.85149 6.534653 5.762376 5970.487
## s7307_18 10368.272 2722.380 17.98867 6.657224 5.807365 5923.024
## s7307_19 10528.715 3664.540 17.36554 6.536007 5.742935 6433.076
## s1903_1 10650.888 3905.325 24.91124 14.378698 6.360947 8738.757
## s7307_20 10453.172 2827.795 17.73414 6.586103 5.740181 6869.881
## s7307_Al_21 11413.359 5488.867 81.60697 2.424976 6.737657 7968.151
## s7307_Al_22 10866.359 5142.857 74.93088 2.305991 6.276498 7613.917
## s7307_Al_23 12064.579 5636.008 81.60470 2.480431 6.986301 8259.393
## s7307_Al_24 11919.386 5671.785 83.78119 2.481766 7.111324 8359.981
## s7307_In_25 9627.507 2510.029 21.74785 5.071633 5.845272 7704.059
## s7307_In_26 9863.415 2616.585 21.30732 5.004878 5.678049 7517.564
## s7307_In_27 10443.587 2811.958 23.98264 5.323047 6.190935 7557.976
## s7307_In_28 10735.586 3966.203 26.89861 5.576541 6.411531 7805.740
## s7307_In_Al_29 11842.844 5612.722 83.91020 2.458372 6.959775 8345.276
## s1903_2 12223.282 4179.389 30.05725 15.629771 6.898855 9285.401
## s7307_In_Al_30 12471.264 5862.069 87.06897 2.520115 6.982759 8487.644
## s7307_In_Al_31 11676.136 5454.545 78.97727 2.394886 6.789773 8135.511
## s7307_In_Al_32 11336.538 5365.385 75.57692 2.339423 6.317308 7856.827
## s8473_33 12770.853 6353.276 25.58405 11.096866 7.008547 15082.550
## s8473_34 12607.110 6384.181 25.48023 11.101695 7.090395 15078.487
## s8473_35 12459.330 6327.273 25.47273 11.086364 7.090909 15369.474
## s8473_36 12880.734 6235.187 24.94075 10.966272 7.110301 15615.688
## s8473_Al_37 13803.340 7569.573 71.52134 5.788497 7.597403 15399.907
## s8473_Al_38 14958.753 8249.313 73.14390 6.186984 8.001833 16728.781
## s8473_Al_39 12962.598 7559.055 66.73228 5.580709 7.647638 15955.807
## s1903_3 10714.286 3822.394 23.68726 14.536680 6.138996 8611.100
## s8473_Al_40 13867.152 7643.312 67.42493 5.896269 7.561419 15869.973
## s8473_In_41 14049.904 7370.441 60.46065 14.596929 8.809981 16392.610
## s8473_In_42 13151.458 5785.513 36.40640 12.558796 7.168391 18268.213
## s8473_In_43 12967.033 7741.758 37.08791 12.609890 7.390110 17270.247
## s8473_In_44 15867.769 8504.132 66.22590 17.548209 10.468320 20974.380
## s8473_In_Al_45 14586.895 8801.534 73.63375 5.436242 8.916587 19668.661
## s8473_In_Al_46 14293.785 8641.750 69.73564 5.442115 8.778487 19812.712
## s8473_In_Al_47 14372.727 8842.105 71.19617 5.483254 9.071770 19537.364
## s8473_In_Al_48 14603.464 8944.954 72.11009 5.614679 8.669725 19481.404
## s8353_49 12670.103 7085.286 55.95127 28.059981 9.194002 14321.556
## s1903_4 11231.954 3811.357 23.30125 14.639076 6.150144 8326.372
## s8353_50 11602.399 6725.092 52.85978 26.429889 8.745387 13598.801
## s8353_51 11701.408 7070.423 56.33803 27.971831 9.380282 14461.127
## s8353_52 13562.613 6588.022 52.54083 26.188748 8.847550 13621.688
## s8353_Al_53 12235.401 8759.124 116.87956 6.240876 9.990876 14134.215
## s8353_Al_54 12815.815 8881.389 117.45419 6.422372 10.154291 14504.436
## s8353_Al_55 12861.163 9315.197 126.64165 6.613508 10.469043 15207.411
## s8353_Al_56 12844.660 9203.883 121.45631 6.582524 10.194175 15010.777
## s8353_In_57 12297.297 6405.405 33.51351 24.459459 9.000000 15010.000
## s8353_In_58 12601.103 6617.647 35.01838 25.588235 9.071691 15396.232
## s8353_In_59 12739.336 6625.592 33.83886 25.194313 9.355450 15593.460
## s1903_Al_5 11180.297 5743.494 63.28996 3.986989 6.914498 8207.342
## s8353_In_60 12690.167 6679.035 34.78664 25.547310 9.239332 15650.371
## s8353_In_Al_61 13701.657 9171.271 91.16022 10.331492 10.165746 14098.619
## s8353_In_Al_62 13561.644 9275.930 92.46575 10.332681 10.538160 14306.360
## s1903_Al_6 11139.601 5783.476 63.24786 3.931624 6.666667 8301.140
## s1903_Al_7 11745.152 6038.781 65.92798 4.016620 7.146814 8846.814
## s1903_Al_8 11085.126 5724.977 64.54630 3.928906 7.296539 8289.149
## s1903_In_9 12321.924 4024.052 24.92137 17.456059 6.244218 9001.943
## BineS BineZn SeedAl SeedB SeedCa SeedCo SeedCu
## s1903_In_10 1450.797 27.18838 22.41445 3.773764 1015.2091 0.7129278 47.90875
## s1903_In_11 1408.163 25.57514 26.85468 4.608031 1041.1090 0.8604207 50.19120
## s1903_In_12 1530.086 28.51003 11.92090 6.760829 765.5367 0.5932203 33.89831
## s1903_In_Al_13 1334.302 47.67442 22.99720 4.295051 885.1541 0.6442577 40.61625
## s1903_In_Al_14 1344.928 47.24638 25.61254 3.865147 746.4387 0.6552707 28.77493
## s1903_In_Al_15 1455.502 51.38756 19.91573 2.743446 NA 0.5617978 44.38202
## s1903_In_Al_16 1241.758 45.05495 33.39844 4.658203 1230.4688 0.7031250 45.99609
## s7307_17 1214.851 12.44554 19.65000 2.490000 999.0000 0.8100000 34.50000
## s7307_18 1220.963 11.16147 23.16000 3.770000 1242.0000 0.9600000 36.00000
## s7307_19 1192.343 15.12306 20.46000 3.180000 1065.0000 0.5700000 26.22000
## s1903_1 1553.254 18.57988 19.32302 2.659574 1029.9807 0.8123791 52.22437
## s7307_20 1229.607 12.65861 21.42000 3.800000 1236.0000 1.2300000 47.10000
## s7307_Al_21 1132.623 42.11036 17.55000 3.080000 993.0000 1.0420000 21.84000
## s7307_Al_22 1064.516 38.43318 25.26000 5.740000 2001.0000 1.3980000 51.90000
## s7307_Al_23 1180.039 45.20548 31.50000 6.610000 1664.0000 1.2220000 41.40000
## s7307_Al_24 1183.301 46.64107 21.57000 4.290000 1374.0000 1.5600000 52.50000
## s7307_In_25 991.404 15.38682 19.20000 3.590000 1098.0000 1.0200000 35.10000
## s7307_In_26 1006.829 15.33659 23.67000 4.890000 1350.0000 1.4700000 45.30000
## s7307_In_27 1090.646 25.19769 23.25000 4.340000 1158.0000 1.2300000 44.70000
## s7307_In_28 1151.093 16.96819 22.71000 3.430000 1203.0000 1.3200000 35.70000
## s7307_In_Al_29 1181.478 43.21796 20.37000 4.300000 1278.0000 1.0200000 34.50000
## s1903_2 1657.443 20.20992 29.66851 1.878453 875.6906 0.7734807 34.80663
## s7307_In_Al_30 1221.264 44.82759 24.57000 3.210000 1617.0000 1.2000000 31.50000
## s7307_In_Al_31 1144.886 42.61364 26.97000 4.860000 1866.0000 1.2300000 39.30000
## s7307_In_Al_32 1113.462 41.25000 33.30000 5.230000 2301.0000 1.8900000 45.30000
## s8473_33 1908.832 40.45584 33.81038 5.397412 1186.6913 0.6654344 50.07394
## s8473_34 1901.130 40.11299 44.49704 2.257002 1131.7957 0.9884679 53.87150
## s8473_35 1865.455 42.27273 37.14286 2.191358 967.5926 0.5555556 48.61111
## s8473_36 1881.495 41.84139 35.18053 2.319109 1218.9239 0.6679035 49.25788
## s8473_Al_37 1564.007 56.49351 44.08503 2.576029 1046.5116 0.1610018 59.57066
## s8473_Al_38 1693.859 59.12007 49.42339 4.654832 1236.6864 0.9467456 54.91124
## s8473_Al_39 1535.433 55.21654 40.04630 2.912088 873.6264 0.3296703 62.63736
## s1903_3 1476.834 17.77992 15.34091 1.846591 906.2500 0.6250000 43.75000
## s8473_Al_40 1596.906 58.14377 49.59184 3.930926 1229.1994 0.2354788 46.01256
## s8473_In_41 2035.509 80.90211 26.84944 4.488848 1198.8848 2.5650558 48.51301
## s8473_In_42 1941.298 69.70837 36.41250 4.675000 1241.2500 1.9875000 69.00000
## s8473_In_43 2292.308 68.95604 26.82000 3.100000 942.0000 1.0720000 53.40000
## s8473_In_44 2498.623 96.14325 28.85294 2.568627 973.5294 2.0558824 47.35294
## s8473_In_Al_45 1507.191 61.26558 36.00000 6.640000 2270.0000 1.8600000 50.40000
## s8473_In_Al_46 1476.755 60.16408 24.48000 3.890000 1602.0000 1.6800000 70.80000
## s8473_In_Al_47 1475.598 61.14833 25.95000 4.640000 1989.0000 1.7400000 57.00000
## s8473_In_Al_48 1516.514 63.57798 35.70000 6.490000 1948.0000 2.3400000 75.00000
## s8353_49 2119.963 44.70478 23.80000 5.050000 2150.0000 1.1237000 43.80000
## s1903_4 1489.894 18.33494 25.28046 3.056093 951.6441 0.5512573 42.35977
## s8353_50 2017.528 40.12915 22.74000 2.530000 1809.0000 0.9300000 36.30000
## s8353_51 2140.845 43.09859 21.21000 1.190000 1173.0000 0.6300000 41.10000
## s8353_52 2025.408 40.29038 23.90000 4.440000 2403.0000 1.2400000 48.80000
## s8353_Al_53 2074.818 59.39781 20.64000 2.650000 1578.0000 1.1100000 45.60000
## s8353_Al_54 2088.717 60.17358 24.75000 2.720000 1905.0000 1.1100000 52.50000
## s8353_Al_55 2164.165 64.44653 23.16000 2.310000 1671.0000 1.2000000 64.80000
## s8353_Al_56 2164.078 61.16505 20.28000 3.770000 1578.0000 1.2900000 47.10000
## s8353_In_57 2370.270 31.62162 25.50000 4.060000 2271.0000 1.8900000 72.00000
## s8353_In_58 2440.257 31.15809 19.30000 2.830000 1962.0000 1.7700000 78.90000
## s8353_In_59 2425.592 31.27962 23.55000 2.520000 1371.0000 1.0800000 52.80000
## s1903_Al_5 1285.316 43.21561 26.54762 2.857143 723.2143 0.4761905 41.66667
## s8353_In_60 2457.328 31.72542 15.86000 2.000000 1965.0000 1.2300000 62.40000
## s8353_In_Al_61 2005.525 49.72376 24.45000 4.090000 1992.0000 1.5300000 51.60000
## s8353_In_Al_62 2048.924 49.02153 16.79000 4.490000 2148.0000 2.1900000 84.00000
## s1903_Al_6 1270.655 42.16524 26.46724 2.203229 914.5299 0.3133903 35.89744
## s1903_Al_7 1321.330 45.98338 21.67300 3.250951 764.2586 0.5988593 36.21673
## s1903_Al_8 1246.024 42.93732 23.43564 1.960396 748.5149 0.3861386 41.28713
## s1903_In_9 1407.031 26.03145 21.82230 3.771532 834.9955 0.4895739 36.99003
## SeedFe SeedK SeedMg SeedMn SeedMo SeedNi
## s1903_In_10 214.3631 9524.715 1317.490 14.572243 5.731939 2.1387833
## s1903_In_11 274.9618 10783.939 1253.346 17.409178 11.214149 2.4665392
## s1903_In_12 136.9209 8474.576 1257.062 11.412429 6.158192 0.9322034
## s1903_In_Al_13 173.1913 8487.395 1246.499 14.817927 3.249300 0.7563025
## s1903_In_Al_14 159.1433 9401.709 1216.524 12.735043 3.418803 1.2250712
## s1903_In_Al_15 146.8463 9213.483 1151.685 13.117978 2.741573 0.7303371
## s1903_In_Al_16 135.6659 9785.156 1335.938 13.330078 3.427734 0.8496094
## s7307_17 121.7100 10590.000 1572.000 11.280000 9.450000 1.6800000
## s7307_18 143.6100 11730.000 1743.000 12.300000 11.220000 2.1300000
## s7307_19 110.8100 9900.000 1455.000 8.940000 8.880000 1.2600000
## s1903_1 163.5493 10444.874 1389.749 16.827853 5.483559 1.4216634
## s7307_20 89.9100 14700.000 2061.000 14.550000 12.720000 1.6800000
## s7307_Al_21 134.0100 8550.000 1206.000 13.980000 2.637000 0.8100000
## s7307_Al_22 223.4100 17730.000 1538.000 25.170000 6.570000 3.0000000
## s7307_Al_23 259.4100 16500.000 1622.000 27.000000 4.230000 2.7000000
## s7307_Al_24 147.5100 17070.000 2400.000 25.050000 6.150000 2.4900000
## s7307_In_25 133.7100 11940.000 1782.000 13.470000 10.110000 5.4500000
## s7307_In_26 218.6100 15870.000 2121.000 16.350000 13.050000 6.5400000
## s7307_In_27 137.9100 14340.000 2028.000 14.580000 13.770000 3.6900000
## s7307_In_28 196.7100 12570.000 1971.000 15.360000 9.840000 2.5500000
## s7307_In_Al_29 104.0100 12600.000 1761.000 17.850000 5.520000 1.8900000
## s1903_2 131.6851 8646.409 1223.757 12.237569 5.580110 1.9889503
## s7307_In_Al_30 108.2100 11550.000 1800.000 16.980000 2.934000 1.8600000
## s7307_In_Al_31 158.9100 14070.000 1983.000 21.450000 4.380000 2.3100000
## s7307_In_Al_32 215.9100 16320.000 2409.000 25.980000 4.320000 5.2800000
## s8473_33 143.4677 10147.874 1513.863 10.092421 14.029575 0.9426987
## s8473_34 157.1269 11120.264 1364.086 10.477759 17.248764 1.1367381
## s8473_35 131.6296 9444.444 1375.000 8.703704 15.416667 0.6944444
## s8473_36 102.8015 10575.139 1474.954 11.354360 16.864564 1.3914657
## s8473_Al_37 134.5438 11484.794 1626.118 11.967800 7.137746 6.1359571
## s8473_Al_38 137.6923 11420.118 1834.320 13.491124 5.372781 3.9822485
## s8473_Al_39 137.7473 11538.462 1642.857 13.241758 7.087912 6.6483516
## s1903_3 130.8807 9034.091 1332.386 12.045455 7.357955 0.7954545
## s8473_Al_40 100.6436 10737.834 1365.777 15.588697 9.324961 5.1899529
## s8473_In_41 158.2807 11431.227 1605.948 23.401487 16.328996 1.6171004
## s8473_In_42 142.3875 15787.500 1841.250 26.587500 20.437500 1.7625000
## s8473_In_43 153.7100 11400.000 1386.000 12.930000 16.740000 0.9000000
## s8473_In_44 139.0294 11382.353 1370.588 20.558824 15.529412 2.0588235
## s8473_In_Al_45 145.1100 13830.000 2259.000 14.340000 8.970000 6.8300000
## s8473_In_Al_46 250.7100 16080.000 2076.000 16.560000 6.450000 5.3420000
## s8473_In_Al_47 242.6100 15810.000 2214.000 18.660000 4.830000 7.8200000
## s8473_In_Al_48 178.4100 20310.000 2823.000 20.790000 13.980000 5.3480000
## s8353_49 137.3100 10830.000 1540.000 25.350000 12.230000 3.2100000
## s1903_4 149.3327 8994.197 1235.977 10.996132 5.077369 1.0735010
## s8353_50 129.5100 8100.000 1560.000 19.080000 10.949000 1.4100000
## s8353_51 100.7100 7890.000 1452.000 11.880000 6.750000 1.2900000
## s8353_52 175.1100 10890.000 1955.000 23.160000 11.560000 3.3600000
## s8353_Al_53 222.2100 9450.000 1797.000 20.340000 4.260000 2.3400000
## s8353_Al_54 179.0100 9540.000 1824.000 19.830000 4.890000 1.8900000
## s8353_Al_55 216.8100 11160.000 1941.000 22.140000 5.340000 2.7000000
## s8353_Al_56 247.7100 10620.000 1917.000 23.700000 3.270000 3.1800000
## s8353_In_57 180.5100 15120.000 2631.000 22.200000 12.780000 2.4900000
## s8353_In_58 232.4100 14640.000 2487.000 20.580000 12.480000 2.4900000
## s8353_In_59 152.9100 10260.000 1920.000 17.220000 8.580000 1.7400000
## s1903_Al_5 133.6667 8809.524 1122.024 11.011905 4.523810 1.8452381
## s8353_In_60 238.1100 10290.000 1929.000 15.210000 8.910000 1.8000000
## s8353_In_Al_61 341.3100 12270.000 2172.000 25.920000 4.470000 3.0600000
## s8353_In_Al_62 280.3100 16470.000 2943.000 27.810000 11.460000 3.4500000
## s1903_Al_6 185.8462 8319.088 1096.866 12.621083 2.686610 0.8831909
## s1903_Al_7 158.6464 9781.369 1249.049 13.716730 2.207224 0.6558935
## s1903_Al_8 110.1149 8792.079 1161.386 13.366337 3.207921 0.4455446
## s1903_In_9 110.3445 8295.558 1188.577 9.383500 6.174071 1.0063463
## SeedP SeedS SeedZn SoilAl SoilB SoilCa SoilCo SoilCu
## s1903_In_10 41189.26 832.6996 66.73004 2.53 0.4880 206.0 0.054000 0.1530
## s1903_In_11 42859.56 814.5315 67.22753 2.66 0.4770 185.0 0.048000 0.1420
## s1903_In_12 28937.01 946.3277 55.19774 3.17 0.4650 251.0 0.064000 0.1590
## s1903_In_Al_13 36536.97 960.7843 43.13725 5.04 0.3970 253.0 0.111000 0.1830
## s1903_In_Al_14 24825.36 874.6439 48.71795 3.45 0.5770 228.0 0.112000 0.1930
## s1903_In_Al_15 40853.09 859.5506 42.13483 4.65 0.3800 193.0 0.097000 0.1660
## s1903_In_Al_16 42315.53 855.4688 37.50000 5.44 0.4990 195.0 0.108000 0.1650
## s7307_17 33431.10 1125.0000 33.30000 3.64 0.4270 203.0 0.067000 0.1820
## s7307_18 34331.10 1164.0000 32.40000 3.42 0.4340 209.0 0.072000 0.1780
## s7307_19 25541.10 1059.0000 34.20000 3.98 0.4380 208.0 0.073000 0.1820
## s1903_1 41906.29 855.8994 36.55706 3.67 0.6010 232.0 0.059000 0.1850
## s7307_20 45731.10 1488.0000 42.30000 4.01 0.4510 153.0 0.071000 0.1810
## s7307_Al_21 20531.10 771.0000 39.00000 7.43 0.5170 175.2 0.047000 0.1770
## s7307_Al_22 49331.10 1428.0000 77.70000 6.87 0.5200 191.3 0.045000 0.1690
## s7307_Al_23 38231.10 1317.0000 86.40000 7.13 0.5450 197.9 0.046000 0.1710
## s7307_Al_24 50231.10 1449.0000 77.70000 6.02 0.5090 216.7 0.045000 0.1700
## s7307_In_25 34331.10 1167.0000 36.60000 3.82 0.4610 220.0 0.072000 0.1810
## s7307_In_26 43031.10 1584.0000 51.60000 4.28 0.5150 206.0 0.089000 0.2410
## s7307_In_27 44231.10 1521.0000 41.70000 3.77 0.4640 137.0 0.066000 0.1620
## s7307_In_28 34631.10 1212.0000 53.40000 3.68 0.4660 195.0 0.069000 0.1790
## s7307_In_Al_29 33431.10 1146.0000 51.60000 5.90 0.6700 206.0 0.106000 0.2000
## s1903_2 29954.97 784.5304 46.13260 3.96 0.5130 189.0 0.048000 0.1510
## s7307_In_Al_30 30731.10 942.0000 54.90000 4.27 0.6580 196.0 0.098000 0.1930
## s7307_In_Al_31 37631.10 1290.0000 62.70000 4.76 0.6890 214.0 0.107000 0.2030
## s7307_In_Al_32 41831.10 1272.0000 84.60000 5.63 0.7030 197.0 0.099000 0.1900
## s8473_33 48153.60 981.5157 46.08133 3.94 0.4990 184.0 0.067000 0.1550
## s8473_34 51616.31 1013.1796 37.11697 4.42 0.4830 162.0 0.062000 0.1500
## s8473_35 46961.57 888.8889 36.75926 3.87 0.4690 172.0 0.066000 0.1500
## s8473_36 47664.38 1001.8553 40.35250 4.00 0.4600 176.0 0.067000 0.1620
## s8473_Al_37 58195.17 976.7442 52.21825 5.83 0.5720 199.0 0.090000 0.1490
## s8473_Al_38 53513.02 976.3314 59.05325 6.87 0.5810 228.0 0.100000 0.1650
## s8473_Al_39 61778.57 945.0549 65.38462 5.98 0.5380 213.0 0.096000 0.1590
## s1903_3 36487.78 894.8864 33.52273 3.46 0.5080 212.0 0.055000 0.1670
## s8473_Al_40 47301.57 932.4961 46.81319 7.16 0.3560 226.0 0.108000 0.1710
## s8473_In_41 44452.70 1226.7658 80.01859 3.13 0.5220 139.0 0.108100 0.1910
## s8473_In_42 66538.88 1353.7500 54.00000 5.23 0.6210 190.0 0.096000 0.2190
## s8473_In_43 52631.10 984.0000 55.80000 3.93 0.5610 106.0 0.098060 0.1550
## s8473_In_44 47775.59 1091.1765 55.88235 5.02 0.5540 130.0 0.099065 0.1330
## s8473_In_Al_45 48431.10 1097.6500 33.60000 3.84 0.4900 265.0 0.087000 0.2070
## s8473_In_Al_46 66431.10 1164.0000 60.90000 3.93 0.4690 248.0 0.081000 0.1870
## s8473_In_Al_47 56231.10 1122.0000 56.40000 4.62 0.7270 253.0 0.082000 0.2590
## s8473_In_Al_48 72731.10 1449.0000 54.30000 4.25 0.4890 262.0 0.084000 0.1940
## s8353_49 61031.10 1257.0000 41.20000 4.59 0.5412 207.0 0.069000 0.1232
## s1903_4 36973.98 783.3656 34.81625 3.46 0.4870 193.0 0.050000 0.1520
## s8353_50 37631.10 918.0000 53.70000 2.65 0.5340 104.0 0.058000 0.1200
## s8353_51 43631.10 945.0000 33.60000 3.22 0.6810 131.0 0.072000 0.1610
## s8353_52 51631.10 1028.0000 56.20000 3.15 0.3970 160.0 0.058000 0.1360
## s8353_Al_53 46331.10 1077.0000 55.80000 5.47 0.4050 150.5 0.031000 0.0990
## s8353_Al_54 54131.10 1107.0000 59.10000 7.35 0.3900 136.6 0.026000 0.0760
## s8353_Al_55 67631.10 1227.0000 80.40000 6.85 0.5440 148.3 0.034000 0.1370
## s8353_Al_56 47231.10 1194.0000 66.30000 7.57 0.4480 145.9 0.031000 0.0850
## s8353_In_57 73631.10 1704.0000 63.60000 3.47 0.3770 158.0 0.057000 0.1340
## s8353_In_58 82931.10 1593.0000 56.40000 3.05 0.4140 137.0 0.058000 0.1310
## s8353_In_59 64431.10 1236.0000 51.30000 3.45 0.3710 157.0 0.058000 0.1370
## s1903_Al_5 34356.25 764.8810 38.69048 6.07 0.6390 147.0 0.058000 0.1310
## s8353_In_60 61631.10 1218.0000 53.70000 4.93 0.4650 153.0 0.055000 0.1400
## s8353_In_Al_61 52031.10 1329.0000 69.90000 3.76 0.5020 123.0 0.060000 0.1780
## s8353_In_Al_62 86231.10 1839.0000 87.30000 5.58 0.4870 136.2 0.028000 0.0870
## s1903_Al_6 30608.83 720.7977 36.46724 7.25 0.8950 186.0 0.089000 0.1840
## s1903_Al_7 32634.13 801.3308 38.21293 6.89 0.7710 175.0 0.086000 0.1760
## s1903_Al_8 37258.51 796.0396 38.31683 4.88 0.8220 178.0 0.089000 0.1870
## s1903_In_9 33029.10 805.0771 58.28649 3.14 0.5230 307.0 0.073000 0.1900
## SoilFe SoilK SoilMg SoilMn SoilMo SoilNi SoilP SoilS SoilZn
## s1903_In_10 2.35 25.80 258.0 0.067 0.39400 0.0770 41.5 12.80 0.03500
## s1903_In_11 1.91 18.20 182.0 0.053 0.34500 0.0660 37.0 10.40 0.03200
## s1903_In_12 1.90 22.80 228.0 0.053 0.39600 0.0820 46.0 17.60 0.02800
## s1903_In_Al_13 3.99 26.30 263.0 0.940 0.32200 0.1400 53.6 22.10 0.02400
## s1903_In_Al_14 4.91 25.10 251.0 0.805 0.36800 0.1460 58.1 20.70 0.01800
## s1903_In_Al_15 4.79 24.00 240.0 0.644 0.31000 0.1290 48.5 18.40 0.02700
## s1903_In_Al_16 3.49 25.60 256.0 1.090 0.29500 0.1320 50.8 17.70 0.01200
## s7307_17 1.83 18.40 184.0 0.063 0.33400 0.0920 43.3 15.70 0.02700
## s7307_18 1.64 19.80 198.0 0.044 0.35500 0.0960 44.5 18.60 0.03200
## s7307_19 1.99 19.60 196.0 0.063 0.35000 0.1000 46.3 17.20 0.04800
## s1903_1 4.28 31.90 319.0 0.089 0.35900 0.0790 40.6 14.20 0.05500
## s7307_20 2.10 19.70 197.0 0.060 0.35100 0.0980 45.8 17.20 0.04200
## s7307_Al_21 4.08 17.70 177.0 0.094 0.12600 0.0730 29.7 9.08 0.04600
## s7307_Al_22 3.24 17.80 178.0 0.093 0.13500 0.0570 30.2 10.00 0.03800
## s7307_Al_23 3.93 17.90 179.0 0.095 0.13200 0.0600 29.1 9.37 0.03900
## s7307_Al_24 3.26 17.80 178.0 0.091 0.12900 0.0630 28.9 9.56 0.03900
## s7307_In_25 2.32 19.10 191.0 0.068 0.34700 0.1020 48.1 15.10 0.05100
## s7307_In_26 2.31 27.90 279.0 0.068 0.42900 0.1240 55.7 23.30 0.07700
## s7307_In_27 2.20 16.10 161.0 0.057 0.29700 0.0930 43.6 12.10 0.03600
## s7307_In_28 2.16 18.80 188.0 0.062 0.41200 0.0950 42.4 14.90 0.05100
## s7307_In_Al_29 3.21 22.10 221.0 1.960 0.28200 0.1260 49.6 19.20 0.03000
## s1903_2 2.24 21.70 217.0 0.056 0.32500 0.0620 39.5 11.10 0.05200
## s7307_In_Al_30 2.47 22.20 222.0 1.410 0.27800 0.1210 49.2 19.00 0.04100
## s7307_In_Al_31 3.06 23.00 230.0 1.940 0.29100 0.1280 51.8 20.10 0.04800
## s7307_In_Al_32 2.63 21.80 218.0 1.350 0.28800 0.1210 49.5 18.10 0.03000
## s8473_33 2.06 26.60 266.0 0.072 0.36900 0.0930 43.3 17.60 0.04400
## s8473_34 2.37 33.40 334.0 0.095 0.37800 0.0850 42.8 15.00 0.05940
## s8473_35 2.25 29.10 291.0 0.071 0.37600 0.0930 42.7 14.70 0.03600
## s8473_36 2.58 30.80 308.0 0.089 0.38000 0.0940 46.6 16.00 0.06400
## s8473_Al_37 5.14 34.00 340.0 0.366 0.16200 0.1110 39.1 15.00 0.03900
## s8473_Al_38 5.15 37.70 377.0 0.410 0.17700 0.1200 44.2 16.70 0.06000
## s8473_Al_39 4.58 35.20 352.0 0.392 0.17200 0.1190 43.5 16.20 0.06900
## s1903_3 2.38 26.30 263.0 0.065 0.35100 0.0740 42.8 12.80 0.04700
## s8473_Al_40 6.87 37.70 377.0 0.420 0.20200 0.1330 45.1 17.00 0.05080
## s8473_In_41 2.13 35.60 356.0 0.132 0.18000 0.1050 72.2 12.80 0.07900
## s8473_In_42 2.46 41.60 416.0 0.135 0.20000 0.1220 78.1 15.00 0.11570
## s8473_In_43 2.08 27.80 278.0 0.083 0.15000 0.1078 55.9 19.67 0.11700
## s8473_In_44 2.20 36.80 368.0 0.109 0.16200 0.1083 66.7 17.20 0.07900
## s8473_In_Al_45 1.79 31.20 312.0 0.890 0.44300 0.1180 65.8 17.60 0.04600
## s8473_In_Al_46 1.72 33.60 336.0 0.878 0.43200 0.1110 54.3 16.90 0.04900
## s8473_In_Al_47 2.66 31.70 317.0 0.914 0.42700 0.1150 89.7 17.10 0.07300
## s8473_In_Al_48 2.34 33.10 331.0 0.899 0.43800 0.1150 56.6 16.90 0.05900
## s8353_49 2.13 21.90 219.0 0.068 0.18600 0.1250 56.8 14.60 0.03151
## s1903_4 2.02 21.50 215.0 0.059 0.33100 0.0660 41.3 11.30 0.05200
## s8353_50 1.74 23.16 231.6 0.064 0.17300 0.0750 31.4 10.80 0.04100
## s8353_51 1.23 18.05 210.5 0.053 0.16919 0.0980 44.3 17.00 0.04800
## s8353_52 1.64 20.00 200.0 0.053 0.26309 0.0810 38.8 13.50 0.04800
## s8353_Al_53 3.27 18.20 182.0 0.100 0.13000 0.0470 25.0 6.04 0.07400
## s8353_Al_54 2.46 18.80 188.0 0.062 0.11500 0.0430 21.0 7.16 0.05700
## s8353_Al_55 2.48 26.00 260.0 0.158 0.13500 0.0520 23.6 7.69 0.07900
## s8353_Al_56 2.38 20.00 200.0 0.089 0.12200 0.0420 24.8 6.03 0.05100
## s8353_In_57 1.72 22.40 224.0 0.045 0.34100 0.0830 38.4 13.10 0.05500
## s8353_In_58 1.57 22.00 220.0 0.051 0.31300 0.0790 36.0 11.50 0.04200
## s8353_In_59 1.51 23.40 234.0 0.052 0.33600 0.0870 41.8 13.30 0.06700
## s1903_Al_5 1.87 26.60 266.0 0.107 0.17000 0.0680 34.6 12.80 0.03000
## s8353_In_60 1.59 23.10 231.0 0.055 0.32900 0.0800 38.7 12.40 0.09106
## s8353_In_Al_61 2.60 30.00 300.0 0.419 0.12600 0.0980 34.2 21.30 0.07660
## s8353_In_Al_62 3.65 18.90 189.0 0.149 0.18000 0.0460 19.7 25.81 0.08500
## s1903_Al_6 2.13 35.50 355.0 0.066 0.25800 0.1060 43.3 15.80 0.04400
## s1903_Al_7 1.93 31.20 312.0 0.094 0.22400 0.1050 42.4 15.70 0.05000
## s1903_Al_8 2.41 32.80 328.0 0.103 0.22700 0.1180 42.9 14.90 0.07800
## s1903_In_9 1.92 24.50 245.0 0.054 0.41500 0.0970 51.7 23.00 0.04400
## BinePerPlantAl BinePerPlantB BinePerPLantCa BinePerPlantCo
## s1903_In_10 737.0455 69.80403 182.36176 26.74639
## s1903_In_11 680.8024 77.64045 173.82189 25.63873
## s1903_In_12 990.6017 88.58739 231.01719 34.37536
## s1903_In_Al_13 1194.2791 85.26977 218.51163 41.06512
## s1903_In_Al_14 1004.8000 99.99459 222.07536 40.04638
## s1903_In_Al_15 851.7000 72.29742 188.41435 34.08718
## s1903_In_Al_16 936.6346 68.10934 176.30769 33.52995
## s7307_17 799.6980 47.66700 169.38614 25.08218
## s7307_18 1081.2465 58.08234 228.72521 33.47705
## s7307_19 821.6992 54.90501 219.49499 30.95442
## s1903_1 660.7500 47.26469 134.23521 21.24305
## s7307_20 610.6495 50.12085 174.47130 23.95015
## s7307_Al_21 1156.1442 89.44831 230.37561 42.87546
## s7307_Al_22 717.3954 55.44553 143.20369 27.53917
## s7307_Al_23 960.3963 71.90313 180.60176 34.93885
## s7307_Al_24 978.5672 82.69424 189.67083 36.08781
## s7307_In_25 856.9427 56.62073 188.83266 37.50487
## s7307_In_26 800.1512 47.49756 190.94020 35.07512
## s7307_In_27 936.1302 58.65477 236.96528 40.58910
## s7307_In_28 851.2112 57.16163 221.60487 37.90065
## s7307_In_Al_29 1053.9935 86.68906 204.11225 38.00711
## s1903_2 856.1307 60.51527 180.34351 27.50239
## s7307_In_Al_30 1207.4483 101.17969 247.35920 45.90819
## s7307_In_Al_31 1019.2372 78.46951 202.36222 38.80156
## s7307_In_Al_32 1074.2538 83.59846 210.35769 40.84615
## s8473_33 543.0205 41.54530 87.94872 18.59487
## s8473_34 424.9237 37.30405 84.05085 17.27712
## s8473_35 501.4036 36.25309 79.66909 16.81091
## s8473_36 479.6021 47.07995 92.00182 19.16705
## s8473_Al_37 513.9156 42.23766 70.13182 18.01948
## s8473_Al_38 520.0982 40.26343 66.96792 16.49395
## s8473_Al_39 479.3719 33.08976 54.45354 14.15551
## s1903_3 788.2601 49.44768 150.14479 24.47360
## s8473_Al_40 465.3000 34.40965 56.52188 14.72225
## s8473_In_41 581.4000 73.71708 111.26488 32.39482
## s8473_In_42 491.7643 60.06040 68.71990 20.89403
## s8473_In_43 476.5247 53.49908 68.14148 20.48901
## s8473_In_44 635.0714 44.42934 154.73554 41.42603
## s8473_In_Al_45 389.8493 40.78303 80.78428 18.30676
## s8473_In_Al_46 478.3865 44.21550 76.15132 18.35442
## s8473_In_Al_47 531.3750 52.36172 90.74641 21.66962
## s8473_In_Al_48 607.8836 60.52220 107.11376 25.37367
## s8353_49 581.7919 62.84057 176.32521 22.26410
## s1903_4 776.6030 57.59423 156.23965 24.81453
## s8353_50 594.5673 85.48035 187.94834 23.76462
## s8353_51 673.2718 72.25455 203.56901 25.11930
## s8353_52 825.0599 80.67659 187.51361 24.05662
## s8353_Al_53 633.2655 79.53084 162.28330 22.71966
## s8353_Al_54 534.9012 67.54388 137.10463 19.69672
## s8353_Al_55 526.0694 64.82533 130.10319 18.44071
## s8353_Al_56 696.3772 85.22825 175.09369 24.70500
## s8353_In_57 620.1000 74.64000 202.50000 23.67000
## s8353_In_58 575.0294 70.63529 191.11765 22.29706
## s8353_In_59 620.2664 74.78123 208.62654 24.51128
## s1903_Al_5 765.5158 61.95260 136.47770 26.55112
## s8353_In_60 724.1911 85.15102 234.26716 26.99165
## s8353_In_Al_61 657.8577 82.08370 171.24448 24.17569
## s8353_In_Al_62 707.3630 87.56164 180.77055 26.63527
## s1903_Al_6 575.0299 56.78803 110.30769 21.04017
## s1903_Al_7 850.1884 60.76205 142.89889 26.89861
## s1903_Al_8 921.2217 65.39701 144.68756 28.40655
## s1903_In_9 968.3700 95.63256 213.18594 31.97789
## BinePerPlantCu BinePerPlantFe BinePerPlantK BinePerPlantMg
## s1903_In_10 122.94222 643.8890 68.99353 22.33932
## s1903_In_11 116.75037 581.8688 65.47291 21.14833
## s1903_In_12 153.39542 777.5115 87.23209 28.09169
## s1903_In_Al_13 141.46744 999.6907 79.86977 39.55814
## s1903_In_Al_14 139.25217 976.9496 79.00058 39.50029
## s1903_In_Al_15 120.52766 825.1398 69.03732 33.65569
## s1903_In_Al_16 115.70192 753.5580 68.63407 32.42802
## s7307_17 87.62475 423.7407 56.84208 15.01673
## s7307_18 111.24363 555.7633 76.10312 19.98227
## s7307_19 102.61860 570.9610 72.22698 25.13874
## s1903_1 88.10000 585.2916 46.91716 17.20296
## s7307_20 81.20846 456.6874 54.87915 14.84592
## s7307_Al_21 125.85334 786.4767 83.83112 40.31573
## s7307_Al_22 80.55207 500.7998 54.11447 25.61143
## s7307_Al_23 102.79110 841.7392 69.37133 32.40705
## s7307_Al_24 105.57783 675.9331 69.49002 33.06651
## s7307_In_25 145.87650 935.1258 73.26533 19.10132
## s7307_In_26 144.02722 939.3266 73.87698 19.59822
## s7307_In_27 185.81832 740.1022 84.69749 22.80498
## s7307_In_28 151.80969 635.1213 74.55865 27.54528
## s7307_In_Al_29 111.55790 763.1335 74.25463 35.19177
## s1903_2 115.26956 659.8068 64.17223 21.94179
## s7307_In_Al_30 130.80690 835.7806 90.97787 42.76379
## s7307_In_Al_31 115.29077 677.0780 76.30355 35.64545
## s7307_In_Al_32 116.00308 699.8988 80.26269 37.98692
## s8473_33 100.72745 346.5179 37.54631 18.67863
## s8473_34 74.79708 318.8484 34.73259 17.58842
## s8473_35 72.22747 335.9989 33.39100 16.95709
## s8473_36 96.71088 380.5298 40.12349 19.42261
## s8473_Al_37 77.12338 566.3162 35.75065 19.60519
## s8473_Al_38 71.92851 456.1879 33.73199 18.60220
## s8473_Al_39 61.44094 411.8350 26.44370 15.42047
## s1903_3 100.29672 721.7460 55.55357 19.81911
## s8473_Al_40 64.66242 425.3286 29.32903 16.16561
## s8473_In_41 130.56410 1113.0098 48.05067 25.20691
## s8473_In_42 107.35169 725.0942 37.02135 16.28622
## s8473_In_43 107.09318 743.2699 36.63187 21.87047
## s8473_In_44 134.16317 860.5450 56.40992 30.23219
## s8473_In_Al_45 71.66347 710.1416 33.03932 19.93547
## s8473_In_Al_46 72.89699 540.0235 34.01921 20.56737
## s8473_In_Al_47 84.48804 704.6146 39.16568 24.09474
## s8473_In_Al_48 100.08991 843.4770 46.58505 28.53440
## s8353_49 87.75633 378.4085 36.61660 20.47648
## s1903_4 104.00659 685.7695 59.58551 20.21925
## s8353_50 94.87777 382.8544 37.88183 21.95743
## s8353_51 103.65211 499.3044 38.79017 23.43845
## s8353_52 98.78766 413.1702 45.57038 22.13575
## s8353_Al_53 73.56843 415.9501 32.24028 23.08029
## s8353_Al_54 64.23963 371.2124 28.51519 19.76109
## s8353_Al_55 59.39493 372.6042 25.85094 18.72355
## s8353_Al_56 78.75218 448.2878 35.25859 25.26466
## s8353_In_57 102.60000 506.4300 40.95000 21.33000
## s8353_In_58 96.39706 425.5721 38.30735 20.11765
## s8353_In_59 103.84550 445.0388 41.91242 21.79820
## s1903_Al_5 83.49954 581.5191 49.75232 25.55855
## s8353_In_60 117.13358 558.8800 46.44601 24.44527
## s8353_In_Al_61 79.03591 453.0617 38.43315 25.72541
## s8353_In_Al_62 86.97945 504.4983 40.34589 27.59589
## s1903_Al_6 66.49103 456.2449 39.93547 20.73376
## s1903_Al_7 86.57992 730.9458 50.91524 26.17812
## s1903_Al_8 89.86558 815.9582 52.43265 27.07914
## s1903_In_9 144.35217 875.6883 80.21573 26.19658
## BinePerPlantMn BinePerPlantMo BinePerPlantNi BinePerPlantP
## s1903_In_10 136.92329 97.71551 35.56054 50.66162
## s1903_In_11 128.77305 91.98075 32.44675 47.56491
## s1903_In_12 173.35530 123.64040 43.80086 63.08987
## s1903_In_Al_13 418.18605 28.06744 48.41163 65.24644
## s1903_In_Al_14 418.66667 27.85043 45.87130 65.59779
## s1903_In_Al_15 358.13110 24.01923 38.83349 57.00901
## s1903_In_Al_16 330.57692 23.29780 37.93764 54.05248
## s7307_17 97.88564 35.83168 31.59703 32.73817
## s7307_18 132.03683 48.86402 42.62606 43.47500
## s7307_19 119.12762 44.83701 39.39654 44.13090
## s1903_1 109.73402 63.33817 28.01997 38.49423
## s7307_20 93.10423 34.57704 30.13595 36.06687
## s7307_Al_21 599.40319 17.81145 49.48809 58.52607
## s7307_Al_22 373.15576 11.48383 31.25696 37.91731
## s7307_Al_23 469.22701 14.26248 40.17123 47.49151
## s7307_Al_24 488.44434 14.46869 41.45902 48.73869
## s7307_In_25 165.50115 38.59513 44.48252 58.62789
## s7307_In_26 159.59180 37.48654 42.52859 56.30655
## s7307_In_27 194.49923 43.16991 50.20849 61.29519
## s7307_In_28 186.81083 38.72908 44.52808 54.21087
## s7307_In_Al_29 526.11693 15.41399 43.63779 52.32488
## s1903_2 157.80057 82.05630 36.21899 48.74835
## s7307_In_Al_30 635.16810 18.38424 50.93922 61.91736
## s7307_In_Al_31 516.11648 15.65058 44.37116 53.16557
## s7307_In_Al_32 535.08462 16.56312 44.72654 55.62633
## s8473_33 75.21709 32.62479 20.60513 44.34270
## s8473_34 70.19802 30.58517 19.53404 41.54123
## s8473_35 68.26691 29.71145 19.00364 41.19019
## s8473_36 77.69043 34.15994 22.14859 48.64287
## s8473_Al_37 185.24026 14.99221 19.67727 39.88576
## s8473_Al_38 164.93951 13.95165 18.04413 37.72340
## s8473_Al_39 136.13386 11.38465 15.60118 32.54985
## s1903_3 122.81844 75.37268 31.83069 44.64856
## s8473_Al_40 142.60373 12.47061 15.99240 33.56499
## s8473_In_41 206.77543 49.92150 30.13013 56.06273
## s8473_In_42 102.48401 35.35301 20.17902 51.42502
## s8473_In_43 104.77335 35.62294 20.87706 48.78845
## s8473_In_44 235.43306 62.38388 37.21488 74.56392
## s8473_In_Al_45 166.78044 12.31309 20.19607 44.54952
## s8473_In_Al_46 165.97083 12.95223 20.89280 47.15425
## s8473_In_Al_47 194.00957 14.94187 24.72057 53.23932
## s8473_In_Al_48 230.03119 17.91083 27.65642 62.14568
## s8353_49 161.69916 81.09335 26.57067 41.38930
## s1903_4 123.61314 77.66030 32.62652 44.17140
## s8353_50 172.58718 86.29359 28.55369 44.40008
## s8353_51 186.76056 92.72662 31.09563 47.93864
## s8353_52 176.53721 87.99419 29.72777 45.76887
## s8353_Al_53 307.97765 16.44471 26.32596 37.24366
## s8353_Al_54 261.33558 14.28978 22.59330 32.27237
## s8353_Al_55 254.54972 13.29315 21.04278 30.56690
## s8353_Al_56 333.39757 18.06903 27.98301 41.20458
## s8353_In_57 111.60000 81.45000 29.97000 49.98330
## s8353_In_58 106.45588 77.78824 27.57794 46.80454
## s8353_In_59 111.32986 82.88929 30.77943 51.30248
## s1903_Al_5 281.64033 17.74210 30.76952 36.52267
## s8353_In_60 127.31911 93.50315 33.81596 57.28036
## s8353_In_Al_61 255.70442 28.97983 28.51492 39.54663
## s8353_In_Al_62 275.08562 30.73973 31.35103 42.56142
## s1903_Al_6 226.74359 14.09487 23.90000 29.75959
## s1903_Al_7 285.79778 17.41205 30.98144 38.35094
## s1903_Al_8 305.30402 18.58372 34.51263 39.20767
## s1903_In_9 162.23811 113.63895 40.64986 58.60265
## BinePerPlantSe BinePerPLantZn SeedPerPlantAl SeedPerPlantB
## s1903_In_10 7.841556 146.95319 106.13241 17.868774
## s1903_In_11 7.329490 133.11860 109.29857 18.754685
## s1903_In_12 9.869054 183.88968 65.20734 36.981733
## s1903_In_Al_13 8.646279 308.93023 98.42801 18.382820
## s1903_In_Al_14 8.446145 296.70725 128.70299 19.422365
## s1903_In_Al_15 7.292067 257.45167 89.81994 12.372940
## s1903_In_Al_16 7.115275 258.16484 152.29688 21.241406
## s7307_17 6.661436 68.24307 185.82350 23.547100
## s7307_18 8.961870 81.92521 212.72460 34.627450
## s7307_19 8.179471 103.74421 206.13450 32.038500
## s1903_1 6.842086 81.84438 90.04526 12.393617
## s7307_20 6.455438 66.45770 147.58380 26.182000
## s7307_Al_21 8.319119 309.30058 112.67100 19.773600
## s7307_Al_22 5.301290 191.39724 183.26130 41.643700
## s7307_Al_23 6.785225 259.93151 185.53500 38.932900
## s7307_Al_24 6.898647 271.91747 140.42070 27.927900
## s7307_In_25 7.544585 117.09370 175.20000 32.758750
## s7307_In_26 7.541151 114.87102 244.86615 50.587050
## s7307_In_27 8.845140 204.35323 235.05750 43.877400
## s7307_In_28 7.994344 117.84409 196.44150 29.669500
## s7307_In_Al_29 7.407867 270.97661 164.08035 34.636500
## s1903_2 8.701574 106.10210 160.50663 10.162431
## s7307_In_Al_30 8.909124 327.01724 150.49125 19.661250
## s7307_In_Al_31 7.481832 278.48011 181.77780 32.756400
## s7307_In_Al_32 7.883308 292.05000 202.46400 31.798400
## s8473_33 5.611966 118.94017 77.93292 12.441035
## s8473_34 5.237613 110.51130 63.40828 3.216227
## s8473_35 4.999418 113.29091 61.84286 3.648611
## s8473_36 5.860857 130.33592 76.51766 5.044063
## s8473_Al_37 4.050779 146.31818 53.12246 3.104114
## s8473_Al_38 3.819652 133.31577 71.41680 6.726233
## s8473_Al_39 3.132283 112.64173 56.46528 4.106044
## s1903_3 7.657384 92.18890 57.06818 6.869318
## s8473_Al_40 3.377457 122.97407 59.75816 4.736766
## s8473_In_41 6.961440 276.68522 105.24981 17.596283
## s8473_In_42 5.464754 196.22907 89.75681 11.523875
## s8473_In_43 6.475769 194.80082 83.94660 9.703000
## s8473_In_44 8.882603 341.78926 86.99162 7.744412
## s8473_In_Al_45 3.413787 138.76654 73.62000 13.578800
## s8473_In_Al_46 3.514676 143.19052 52.75440 8.382950
## s8473_In_Al_47 4.021005 166.62919 52.54875 9.396000
## s8473_In_Al_48 4.837679 202.81376 74.61300 13.564100
## s8353_49 6.126692 129.19681 97.81800 20.755500
## s1903_4 7.903888 97.26684 101.75387 12.300774
## s8353_50 6.587228 131.02168 94.59840 10.524800
## s8353_51 7.096901 142.87183 107.21655 6.015450
## s8353_52 6.805372 135.37568 144.59500 26.862000
## s8353_Al_53 5.467144 156.51323 96.38880 12.375500
## s8353_Al_54 4.647396 133.88621 89.10000 9.792000
## s8353_Al_55 4.349972 129.53752 67.97460 6.779850
## s8353_Al_56 5.940393 167.89806 86.49420 16.079050
## s8353_In_57 7.893000 105.30000 144.07500 22.939000
## s8353_In_58 7.418382 94.72059 98.71950 14.475450
## s8353_In_59 7.980199 102.90995 124.46175 13.318200
## s1903_Al_5 5.719656 192.30948 101.41190 10.914286
## s8353_In_60 8.993822 116.11503 107.53080 13.560000
## s8353_In_Al_61 5.625497 139.47514 116.13750 19.427500
## s8353_In_Al_62 6.095548 145.83904 82.10310 21.956100
## s1903_Al_6 4.555299 151.16239 99.25214 8.262108
## s1903_Al_7 5.727964 199.33795 89.07605 13.361407
## s1903_Al_8 5.893695 203.09355 89.28980 7.469109
## s1903_In_9 9.159769 169.46475 130.49737 22.553762
## SeedPerPlantCa SeedPerPlantCo SeedPerPlantCu SeedPerPlantFe
## s1903_In_10 4.807015 3.3757129 226.84791 1015.0094
## s1903_In_11 4.237314 3.5019120 204.27820 1119.0944
## s1903_In_12 4.187486 3.2449153 185.42373 748.9573
## s1903_In_Al_13 3.788459 2.7574230 173.83754 741.2588
## s1903_In_Al_14 3.750855 3.2927350 144.59402 799.6951
## s1903_In_Al_15 3.711882 2.5337079 200.16292 662.2770
## s1903_In_Al_16 5.610938 3.2062500 209.74219 618.6366
## s7307_17 9.447210 7.6599000 326.25500 1150.9709
## s7307_18 11.407770 8.8176000 330.66000 1319.0578
## s7307_19 10.729875 5.7427500 264.16650 1116.4108
## s1903_1 4.799710 3.7856867 243.36557 762.1398
## s7307_20 8.516040 8.4747000 324.51900 619.4799
## s7307_Al_21 6.375060 6.6896400 140.21280 860.3442
## s7307_Al_22 14.517255 10.1424900 376.53450 1620.8395
## s7307_Al_23 9.800960 7.1975800 243.84600 1527.9249
## s7307_Al_24 8.944740 10.1556000 341.77500 960.2901
## s7307_In_25 10.019250 9.3075000 320.28750 1220.1037
## s7307_In_26 13.965750 15.2071500 468.62850 2261.5204
## s7307_In_27 11.707380 12.4353000 451.91700 1394.2701
## s7307_In_28 10.405950 11.4180000 308.80500 1701.5415
## s7307_In_Al_29 10.294290 8.2161000 277.89750 837.8006
## s1903_2 4.737486 4.1845304 188.30387 712.4163
## s7307_In_Al_30 9.904125 7.3500000 192.93750 662.7862
## s7307_In_Al_31 12.576840 8.2902000 264.88200 1071.0534
## s7307_In_Al_32 13.990080 11.4912000 275.42400 1312.7328
## s8473_33 2.735323 1.5338262 115.42043 330.6929
## s8473_34 1.612809 1.4085667 76.76689 223.9058
## s8473_35 1.611042 0.9250000 80.93750 219.1633
## s8473_36 2.651160 1.4526902 107.13590 223.5932
## s8473_Al_37 1.261047 0.1940072 71.78265 162.1253
## s8473_Al_38 1.787012 1.3680473 79.34675 198.9654
## s8473_Al_39 1.231813 0.4648352 88.31868 194.2236
## s1903_3 3.371250 2.3250000 162.75000 486.8761
## s8473_Al_40 1.481185 0.2837520 55.44513 121.2756
## s8473_In_41 4.699628 10.0550186 190.17100 620.4602
## s8473_In_42 3.059681 4.8991875 170.08500 350.9852
## s8473_In_43 2.948460 3.3553600 167.14200 481.1123
## s8473_In_44 2.935191 6.1984853 142.76912 419.1737
## s8473_In_Al_45 4.642150 3.8037000 103.06800 296.7500
## s8473_In_Al_46 3.452310 3.6204000 152.57400 540.2800
## s8473_In_Al_47 4.027725 3.5235000 115.42500 491.2853
## s8473_In_Al_48 4.071320 4.8906000 156.75000 372.8769
## s8353_49 8.836500 4.6184070 180.01800 564.3441
## s1903_4 3.830368 2.2188104 170.49807 601.0641
## s8353_50 7.525440 3.8688000 151.00800 538.7616
## s8353_51 5.929515 3.1846500 207.76050 509.0890
## s8353_52 14.538150 7.5020000 295.24000 1059.4155
## s8353_Al_53 7.369260 5.1837000 212.95200 1037.7207
## s8353_Al_54 6.858000 3.9960000 189.00000 644.4360
## s8353_Al_55 4.904385 3.5220000 190.18800 636.3374
## s8353_Al_56 6.730170 5.5018500 200.88150 1056.4832
## s8353_In_57 12.831150 10.6785000 406.80000 1019.8815
## s8353_In_58 10.035630 9.0535500 403.57350 1188.7771
## s8353_In_59 7.245735 5.7078000 279.04800 808.1294
## s1903_Al_5 2.762679 1.8190476 159.16667 510.6067
## s8353_In_60 13.322700 8.3394000 423.07200 1614.3858
## s8353_In_Al_61 9.462000 7.2675000 245.10000 1621.2225
## s8353_In_Al_62 10.503720 10.7091000 410.76000 1370.7159
## s1903_Al_6 3.429487 1.1752137 134.61538 696.9231
## s1903_Al_7 3.141103 2.4613118 148.85076 652.0367
## s1903_Al_8 2.851842 1.4711881 157.30396 419.5376
## s1903_In_9 4.993273 2.9276519 221.20036 659.8602
## SeedPerPlantK SeedPerPlantMg SeedPerPlantMn SeedPerPlantMo
## s1903_In_10 45.09952 6.238317 68.99957 27.140732
## s1903_In_11 43.89063 5.101119 70.85535 45.641587
## s1903_In_12 46.35593 6.876130 62.42599 33.685311
## s1903_In_Al_13 36.32605 5.335014 63.42073 13.907003
## s1903_In_Al_14 47.24359 6.113034 63.99359 17.179487
## s1903_In_Al_15 41.55281 5.194101 59.16208 12.364494
## s1903_In_Al_16 44.62031 6.091875 60.78516 15.630469
## s7307_17 100.14610 14.865880 106.67120 89.365500
## s7307_18 107.74005 16.009455 112.97550 103.055700
## s7307_19 99.74250 14.659125 90.07050 89.466000
## s1903_1 48.67311 6.476228 78.41779 25.553385
## s7307_20 101.28300 14.200290 100.24950 87.640800
## s7307_Al_21 54.89100 7.742520 89.75160 16.929540
## s7307_Al_22 128.63115 11.158190 182.60835 47.665350
## s7307_Al_23 97.18500 9.553580 159.03000 24.914700
## s7307_Al_24 111.12570 15.624000 163.07550 40.036500
## s7307_In_25 108.95250 16.260750 122.91375 92.253750
## s7307_In_26 164.17515 21.941745 169.14075 135.002250
## s7307_In_27 144.97740 20.503080 147.40380 139.214700
## s7307_In_28 108.73050 17.049150 132.86400 85.116000
## s7307_In_Al_29 101.49300 14.184855 143.78175 44.463600
## s1903_2 46.77707 6.620525 66.20525 30.188398
## s7307_In_Al_30 70.74375 11.025000 104.00250 17.970750
## s7307_In_Al_31 94.83180 13.365420 144.57300 29.521200
## s7307_In_Al_32 99.22560 14.646720 157.95840 26.265600
## s8473_33 23.39085 3.489455 23.26303 32.338170
## s8473_34 15.84638 1.943822 14.93081 24.579489
## s8473_35 15.72500 2.289375 14.49167 25.668750
## s8473_36 23.00093 3.208024 24.69573 36.680427
## s8473_Al_37 13.83918 1.959472 14.42120 8.600984
## s8473_Al_38 16.50207 2.650592 19.49467 7.763669
## s8473_Al_39 16.26923 2.316429 18.67088 9.993956
## s1903_3 33.60682 4.956477 44.80909 27.371591
## s8473_Al_40 12.93909 1.645761 18.78438 11.236578
## s8473_In_41 44.81041 6.295316 91.73383 64.009665
## s8473_In_42 38.91619 4.538681 65.53819 50.378437
## s8473_In_43 35.68200 4.338180 40.47090 52.396200
## s8473_In_44 34.31779 4.132324 61.98485 46.821176
## s8473_In_Al_45 28.28235 4.619655 29.32530 18.343650
## s8473_In_Al_46 34.65240 4.473780 35.68680 13.899750
## s8473_In_Al_47 32.01525 4.483350 37.78650 9.780750
## s8473_In_Al_48 42.44790 5.900070 43.45110 29.218200
## s8353_49 44.51130 6.329400 104.18850 50.265300
## s1903_4 36.20164 4.974807 44.25943 20.436412
## s8353_50 33.69600 6.489600 79.37280 45.547840
## s8353_51 39.88395 7.339860 60.05340 34.121250
## s8353_52 65.88450 11.827750 140.11800 69.938000
## s8353_Al_53 44.13150 8.391990 94.98780 19.894200
## s8353_Al_54 34.34400 6.566400 71.38800 17.604000
## s8353_Al_55 32.75460 5.696835 64.98090 15.672900
## s8353_Al_56 45.29430 8.176005 101.08050 13.946550
## s8353_In_57 85.42800 14.865150 125.43000 72.207000
## s8353_In_58 74.88360 12.721005 105.26670 63.835200
## s8353_In_59 54.22410 10.147200 91.00770 45.345300
## s1903_Al_5 33.65238 4.286131 42.06548 17.280952
## s8353_In_60 69.76620 13.078620 103.12380 60.409800
## s8353_In_Al_61 58.28250 10.317000 123.12000 21.232500
## s8353_In_Al_62 80.53830 14.391270 135.99090 56.039400
## s1903_Al_6 31.19658 4.113248 47.32906 10.074786
## s1903_Al_7 40.20143 5.133593 56.37576 9.071692
## s1903_Al_8 33.49782 4.424881 50.92574 12.222178
## s1903_In_9 49.60743 7.107688 56.11333 36.920943
## SeedPerPlantNi SeedPerPlantP SeedPerPlantS SeedPerPlantZn
## s1903_In_10 10.127139 195.03114 3.942833 315.96673
## s1903_In_11 10.038815 174.43841 3.315143 273.61606
## s1903_In_12 5.099153 158.28542 5.176412 301.93164
## s1903_In_Al_13 3.236975 156.37825 4.112157 184.62745
## s1903_In_Al_14 6.155983 124.74741 4.395085 244.80769
## s1903_In_Al_15 3.293820 184.24744 3.876573 190.02809
## s1903_In_Al_16 3.874219 192.95880 3.900937 171.00000
## s7307_17 15.887200 316.14677 10.638750 314.90700
## s7307_18 19.564050 315.33115 10.691340 297.59400
## s7307_19 12.694500 257.32658 10.669425 344.56500
## s1903_1 6.624952 195.28329 3.988491 170.35590
## s7307_20 11.575200 315.08728 10.252320 291.44700
## s7307_Al_21 5.200200 131.80966 4.949820 250.38000
## s7307_Al_22 21.765000 357.89713 10.360140 563.71350
## s7307_Al_23 15.903000 225.18118 7.757130 508.89600
## s7307_Al_24 16.209900 327.00446 9.432990 505.82700
## s7307_In_25 49.731250 313.27129 10.648875 333.97500
## s7307_In_26 67.656300 445.15673 16.386480 533.80200
## s7307_In_27 37.305900 447.17642 15.377310 421.58700
## s7307_In_28 22.057500 299.55901 10.483800 461.91000
## s7307_In_Al_29 15.223950 269.28751 9.231030 415.63800
## s1903_2 10.760221 162.05640 4.244309 249.57735
## s7307_In_Al_30 11.392500 188.22799 5.769750 336.26250
## s7307_In_Al_31 15.569400 253.63361 8.694600 422.59800
## s7307_In_Al_32 32.102400 254.33309 7.733760 514.36800
## s8473_33 2.172921 110.99406 2.262394 106.21747
## s8473_34 1.619852 73.55324 1.443781 52.89168
## s8473_35 1.156250 78.19102 1.480000 61.20417
## s8473_36 3.026438 103.67002 2.179035 87.76670
## s8473_Al_37 7.393828 70.12518 1.176977 62.92299
## s8473_Al_38 5.754349 77.32631 1.410799 85.33195
## s8473_Al_39 9.374176 87.10779 1.332527 92.19231
## s1903_3 2.959091 135.73456 3.328977 124.70455
## s8473_Al_40 6.253893 56.99839 1.123658 56.40989
## s8473_In_41 6.339033 174.25457 4.808922 313.67286
## s8473_In_42 4.344563 164.01833 3.336994 133.11000
## s8473_In_43 2.817000 164.73534 3.079920 174.65400
## s8473_In_44 6.207353 144.04340 3.289897 168.48529
## s8473_In_Al_45 13.967350 99.04160 2.244694 68.71200
## s8473_In_Al_46 11.512010 143.15902 2.508420 131.23950
## s8473_In_Al_47 15.835500 113.86798 2.272050 114.21000
## s8473_In_Al_48 11.177320 152.00800 3.028410 113.48700
## s8353_49 13.193100 250.83782 5.166270 169.33200
## s1903_4 4.320841 148.82029 3.153046 140.13540
## s8353_50 5.865600 156.54538 3.818880 223.39200
## s8353_51 6.520950 220.55521 4.776975 169.84800
## s8353_52 20.328000 312.36816 6.219400 340.01000
## s8353_Al_53 10.927800 216.36624 5.029590 260.58600
## s8353_Al_54 6.804000 194.87196 3.985200 212.76000
## s8353_Al_55 7.924500 198.49728 3.601245 235.97400
## s8353_Al_56 13.562700 201.44064 5.092410 282.76950
## s8353_In_57 14.068500 416.01572 9.627600 359.34000
## s8353_In_58 12.736350 424.19258 8.148195 288.48600
## s8353_In_59 9.195900 340.51836 6.532260 271.12050
## s1903_Al_5 7.048810 131.24087 2.921845 147.79762
## s8353_In_60 12.204000 417.85886 8.258040 364.08600
## s8353_In_Al_61 14.535000 247.14773 6.312750 332.02500
## s8353_In_Al_62 16.870500 421.67008 8.992710 426.89700
## s1903_Al_6 3.311966 114.78312 2.702991 136.75214
## s1903_Al_7 2.695722 134.12626 3.293470 157.05513
## s1903_Al_8 1.697525 141.95494 3.032911 145.98713
## s1903_In_9 6.017951 197.51403 4.814361 348.55322
## BineSeedPerPlantAl BineSeedPerPlantB BineSeedPerPlantCa
## s1903_In_10 106.13241 754.9142 74.61105
## s1903_In_11 109.29857 699.5571 81.87776
## s1903_In_12 65.20734 1027.5835 92.77488
## s1903_In_Al_13 98.42801 1212.6619 89.05823
## s1903_In_Al_14 128.70299 1024.2224 103.74544
## s1903_In_Al_15 89.81994 864.0729 76.00930
## s1903_In_Al_16 152.29688 957.8760 73.72028
## s7307_17 185.82350 823.2451 57.11421
## s7307_18 212.72460 1115.8739 69.49011
## s7307_19 206.13450 853.7377 65.63489
## s1903_1 90.04526 673.1436 52.06440
## s7307_20 147.58380 636.8315 58.63689
## s7307_Al_21 112.67100 1175.9178 95.82337
## s7307_Al_22 183.26130 759.0391 69.96278
## s7307_Al_23 185.53500 999.3292 81.70409
## s7307_Al_24 140.42070 1006.4951 91.63898
## s7307_In_25 175.20000 889.7014 66.63998
## s7307_In_26 244.86615 850.7383 61.46331
## s7307_In_27 235.05750 980.0076 70.36215
## s7307_In_28 196.44150 880.8807 67.56758
## s7307_In_Al_29 164.08035 1088.6300 96.98335
## s1903_2 160.50663 866.2932 65.25275
## s7307_In_Al_30 150.49125 1227.1095 111.08382
## s7307_In_Al_31 181.77780 1051.9936 91.04635
## s7307_In_Al_32 202.46400 1106.0522 97.58854
## s8473_33 77.93292 555.4615 44.28062
## s8473_34 63.40828 428.1400 38.91686
## s8473_35 61.84286 505.0522 37.86413
## s8473_36 76.51766 484.6462 49.73110
## s8473_Al_37 53.12246 517.0197 43.49871
## s8473_Al_38 71.41680 526.8244 42.05044
## s8473_Al_39 56.46528 483.4779 34.32158
## s1903_3 57.06818 795.1295 52.81893
## s8473_Al_40 59.75816 470.0368 35.89083
## s8473_In_41 105.24981 598.9963 78.41671
## s8473_In_42 89.75681 503.2882 63.12008
## s8473_In_43 83.94660 486.2277 56.44754
## s8473_In_44 86.99162 642.8158 47.36453
## s8473_In_Al_45 73.62000 403.4281 45.42518
## s8473_In_Al_46 52.75440 486.7695 47.66781
## s8473_In_Al_47 52.54875 540.7710 56.38945
## s8473_In_Al_48 74.61300 621.4477 64.59352
## s8353_49 97.81800 602.5474 71.67707
## s1903_4 101.75387 788.9038 61.42459
## s8353_50 94.59840 605.0921 93.00579
## s8353_51 107.21655 679.2873 78.18406
## s8353_52 144.59500 851.9219 95.21474
## s8353_Al_53 96.38880 645.6410 86.90010
## s8353_Al_54 89.10000 544.6932 74.40188
## s8353_Al_55 67.97460 532.8493 69.72971
## s8353_Al_56 86.49420 712.4562 91.95842
## s8353_In_57 144.07500 643.0390 87.47115
## s8353_In_58 98.71950 589.5049 80.67092
## s8353_In_59 124.46175 633.5846 82.02697
## s1903_Al_5 101.41190 776.4301 64.71528
## s8353_In_60 107.53080 737.7511 98.47372
## s8353_In_Al_61 116.13750 677.2852 91.54570
## s8353_In_Al_62 82.10310 729.3191 98.06536
## s1903_Al_6 99.25214 583.2920 60.21752
## s1903_Al_7 89.07605 863.5498 63.90315
## s1903_Al_8 89.28980 928.6908 68.24885
## s1903_In_9 130.49737 990.9238 100.62584
## BineSeedPerPlantCo BineSeedPerPlantCu BineSeedPerPlantFe
## s1903_In_10 185.73747 253.59430 1137.9516
## s1903_In_11 177.32380 229.91693 1235.8447
## s1903_In_12 234.26211 219.79909 902.3528
## s1903_In_Al_13 221.26905 214.90265 882.7263
## s1903_In_Al_14 225.36810 184.64039 938.9473
## s1903_In_Al_15 190.94806 234.25010 782.8047
## s1903_In_Al_16 179.51394 243.27213 734.3385
## s7307_17 177.04604 351.33718 1238.5957
## s7307_18 237.54281 364.13705 1430.3015
## s7307_19 225.23774 295.12092 1219.0293
## s1903_1 138.02089 264.60862 850.2398
## s7307_20 182.94600 348.46915 700.6884
## s7307_Al_21 237.06525 183.08826 986.1975
## s7307_Al_22 153.34618 404.07367 1701.3916
## s7307_Al_23 187.79934 278.78485 1630.7160
## s7307_Al_24 199.82643 377.86281 1065.8679
## s7307_In_25 198.14016 357.79237 1365.9803
## s7307_In_26 206.14735 503.70362 2405.5477
## s7307_In_27 249.40058 492.50610 1580.0884
## s7307_In_28 233.02287 346.70565 1853.3512
## s7307_In_Al_29 212.32835 315.90461 949.3585
## s1903_2 184.52804 215.80625 827.6859
## s7307_In_Al_30 254.70920 238.84569 793.5931
## s7307_In_Al_31 210.65242 303.68356 1186.3442
## s7307_In_Al_32 221.84889 316.27015 1428.7359
## s8473_33 89.48254 134.01530 431.4204
## s8473_34 85.45941 94.04400 298.7028
## s8473_35 80.59409 97.74841 291.3908
## s8473_36 93.45451 126.30295 320.3041
## s8473_Al_37 70.32583 89.80213 239.2487
## s8473_Al_38 68.33597 95.84070 270.8939
## s8473_Al_39 54.91838 102.47419 255.6646
## s1903_3 152.46979 187.22360 587.1729
## s8473_Al_40 56.80564 70.16738 185.9380
## s8473_In_41 121.31989 222.56582 751.0243
## s8473_In_42 73.61908 190.97903 458.3369
## s8473_In_43 71.49684 187.63101 588.2055
## s8473_In_44 160.93402 184.19515 553.3368
## s8473_In_Al_45 84.58798 121.37476 368.4134
## s8473_In_Al_46 79.77172 170.92842 613.1770
## s8473_In_Al_47 94.26991 137.09462 575.7733
## s8473_In_Al_48 112.00436 182.12367 472.9668
## s8353_49 180.94362 202.28210 652.1004
## s1903_4 158.45846 195.31260 705.0707
## s8353_50 191.81714 174.77262 633.6394
## s8353_51 206.75366 232.87980 612.7412
## s8353_52 195.01561 319.29662 1158.2032
## s8353_Al_53 167.46700 235.67166 1111.2891
## s8353_Al_54 141.10063 208.69672 708.6756
## s8353_Al_55 133.62519 208.62871 695.7323
## s8353_Al_56 180.59554 225.58650 1135.2353
## s8353_In_57 213.17850 430.47000 1122.4815
## s8353_In_58 200.17120 425.87056 1285.1742
## s8353_In_59 214.33434 303.55928 911.9748
## s1903_Al_5 138.29674 185.71778 594.1062
## s8353_In_60 242.60656 450.06365 1731.5194
## s8353_In_Al_61 178.51198 269.27569 1700.2584
## s8353_In_Al_62 191.47965 437.39527 1457.6954
## s1903_Al_6 111.48291 155.65556 763.4141
## s1903_Al_7 145.36020 175.74938 738.6166
## s1903_Al_8 146.15875 185.71051 509.4032
## s1903_In_9 216.11359 253.17825 804.2124
## BineSeedPerPlantK BineSeedPerPlantMg BineSeedPerPlantMo
## s1903_In_10 688.9885 75.23185 91.33889
## s1903_In_11 625.7594 70.57403 92.00368
## s1903_In_12 823.8674 94.10822 90.51768
## s1903_In_Al_13 1036.0167 85.20478 102.97887
## s1903_In_Al_14 1024.1932 85.11361 103.49388
## s1903_In_Al_15 866.6926 74.23142 92.81777
## s1903_In_Al_16 798.1783 74.72594 93.21318
## s7307_17 523.8868 71.70796 121.68793
## s7307_18 663.5034 92.11257 132.95777
## s7307_19 670.7035 86.88611 115.20924
## s1903_1 633.9647 53.39339 95.62075
## s7307_20 557.9704 69.07944 115.09542
## s7307_Al_21 841.3677 91.57364 130.06733
## s7307_Al_22 629.4310 65.27266 208.21978
## s7307_Al_23 938.9242 78.92491 191.43705
## s7307_Al_24 787.0588 85.11402 196.14201
## s7307_In_25 1044.0783 89.52608 142.01507
## s7307_In_26 1103.5018 95.81872 188.73897
## s7307_In_27 885.0796 105.20057 170.20878
## s7307_In_28 743.8518 91.60780 160.40928
## s7307_In_Al_29 864.6265 88.43949 178.97352
## s1903_2 706.5838 70.79276 88.14704
## s7307_In_Al_30 906.5244 102.00287 146.76629
## s7307_In_Al_31 771.9098 89.66897 180.21845
## s7307_In_Al_32 799.1244 94.90941 195.94532
## s8473_33 369.9088 41.03576 41.94166
## s8473_34 334.6948 36.67641 32.51923
## s8473_35 351.7239 35.68038 31.44876
## s8473_36 403.5307 43.33151 44.11834
## s8473_Al_37 580.1554 37.71012 34.02639
## s8473_Al_38 472.6900 36.38258 38.09687
## s8473_Al_39 428.1043 28.76013 34.09135
## s1903_3 755.3528 60.51005 64.62820
## s8473_Al_40 438.2677 30.97479 34.94999
## s8473_In_41 1157.8202 54.34599 116.94074
## s8473_In_42 764.0104 41.56004 81.82441
## s8473_In_43 778.9519 40.97005 62.34137
## s8473_In_44 894.8628 60.54224 92.21704
## s8473_In_Al_45 738.4239 37.65897 49.26077
## s8473_In_Al_46 574.6759 38.49299 56.25417
## s8473_In_Al_47 736.6298 43.64903 61.88124
## s8473_In_Al_48 885.9249 52.48512 71.98550
## s8353_49 422.9198 42.94600 124.66498
## s1903_4 721.9712 64.56032 64.47868
## s8353_50 416.5504 44.37143 101.33023
## s8353_51 539.1883 46.13003 83.49185
## s8353_52 479.0547 57.39813 162.25375
## s8353_Al_53 460.0816 40.63227 118.06809
## s8353_Al_54 405.5564 35.08159 91.14909
## s8353_Al_55 405.3588 31.54777 83.70445
## s8353_Al_56 493.5821 43.43460 126.34516
## s8353_In_57 591.8580 55.81515 146.76000
## s8353_In_58 500.4557 51.02836 125.38435
## s8353_In_59 499.2629 52.05962 112.80590
## s1903_Al_5 615.1714 54.03845 67.62403
## s8353_In_60 628.6462 59.52463 127.56907
## s8353_In_Al_61 511.3442 48.75015 148.84541
## s8353_In_Al_62 585.0366 54.73716 163.58679
## s1903_Al_6 487.4415 44.04872 68.06282
## s1903_Al_7 771.1473 56.04883 82.55388
## s1903_Al_8 849.4560 56.85753 78.00488
## s1903_In_9 925.2958 87.32341 82.30990
## BineSeedPerPlantNi BineSeedPerPlantP BineSeedPerPlantS
## s1903_In_10 164.06402 107.84265 230.59168
## s1903_In_11 174.41464 102.01957 206.88516
## s1903_In_12 207.04061 128.73955 202.08628
## s1903_In_Al_13 432.09305 31.30442 204.78988
## s1903_In_Al_14 435.84615 34.00642 170.61872
## s1903_In_Al_15 370.49559 27.31305 223.08093
## s1903_In_Al_16 346.20739 27.17202 230.89644
## s7307_17 187.25114 51.71888 347.74380
## s7307_18 235.09253 68.42807 357.95722
## s7307_19 208.59362 57.53151 296.72312
## s1903_1 135.28741 69.96312 223.30326
## s7307_20 180.74503 46.15224 345.22323
## s7307_Al_21 616.33273 23.01165 181.29775
## s7307_Al_22 420.82111 33.24883 389.15409
## s7307_Al_23 494.14171 30.16548 265.35241
## s7307_Al_24 528.48084 30.67859 368.46348
## s7307_In_25 257.75490 88.32638 357.75381
## s7307_In_26 294.59405 105.14284 487.68531
## s7307_In_27 333.71393 80.47581 497.38491
## s7307_In_28 271.92683 60.78658 344.08710
## s7307_In_Al_29 570.58053 30.63794 312.92530
## s1903_2 187.98897 92.81652 198.27539
## s7307_In_Al_30 653.13885 29.77674 239.16721
## s7307_In_Al_31 545.63768 31.21998 298.00478
## s7307_In_Al_32 561.35022 48.66552 299.05963
## s8473_33 107.55526 34.79771 131.59919
## s8473_34 94.77751 32.20502 93.08728
## s8473_35 93.93566 30.86770 97.19466
## s8473_36 114.37086 37.18637 125.81861
## s8473_Al_37 193.84124 22.38604 89.80245
## s8473_Al_38 172.70317 19.70600 95.37044
## s8473_Al_39 146.12781 20.75882 102.70897
## s1903_3 150.19003 78.33177 167.56525
## s8473_Al_40 153.84031 18.72450 72.99079
## s8473_In_41 270.78510 56.26053 204.38470
## s8473_In_42 152.86245 39.69757 184.19735
## s8473_In_43 157.16955 38.43994 185.61240
## s8473_In_44 282.25423 68.59124 181.25827
## s8473_In_Al_45 185.12409 26.28044 119.23767
## s8473_In_Al_46 179.87058 24.46424 164.05182
## s8473_In_Al_47 203.79032 30.77737 138.58855
## s8473_In_Al_48 259.24939 29.08815 179.66442
## s8353_49 211.96446 94.28645 277.40849
## s1903_4 144.04955 81.98114 181.44680
## s8353_50 218.13502 92.15919 185.09907
## s8353_51 220.88181 99.24757 251.65084
## s8353_52 246.47521 108.32219 342.09592
## s8353_Al_53 327.87185 27.37251 242.69220
## s8353_Al_54 278.93958 21.09378 217.46526
## s8353_Al_55 270.22262 21.21765 219.54006
## s8353_Al_56 347.34412 31.63173 229.42365
## s8353_In_57 183.80700 95.51850 445.98572
## s8353_In_58 170.29108 90.52459 451.77052
## s8353_In_59 156.67516 92.08519 371.29779
## s1903_Al_5 298.92129 24.79091 162.01039
## s8353_In_60 187.72891 105.70715 451.67481
## s8353_In_Al_61 276.93692 43.51483 275.66264
## s8353_In_Al_62 331.12502 47.61023 453.02111
## s1903_Al_6 236.81838 17.40684 138.68312
## s1903_Al_7 294.86948 20.10777 165.10770
## s1903_Al_8 317.52620 20.28125 176.46757
## s1903_In_9 199.15906 119.65690 238.16389
## BineSeedPerPlantS.1 BineSeedPerPlantZn QRTPCR
## s1903_In_10 54.60445 323.80829 8685.0
## s1903_In_11 50.88006 280.94555 1058.0
## s1903_In_12 68.26628 311.80069 788.1
## s1903_In_Al_13 69.35860 193.27373 2116.0
## s1903_In_Al_14 69.99287 253.25384 6881.0
## s1903_In_Al_15 60.88558 197.32016 6895.0
## s1903_In_Al_16 57.95341 178.11527 1293.0
## s7307_17 43.37692 321.56844 9420.0
## s7307_18 54.16634 306.55587 4897.0
## s7307_19 54.80033 352.74447 1298.0
## s1903_1 42.48272 177.19799 997.0
## s7307_20 46.31919 297.90244 9063.0
## s7307_Al_21 63.47589 258.69912 8162.0
## s7307_Al_22 48.27745 569.01479 8482.0
## s7307_Al_23 55.24864 515.68123 21270.0
## s7307_Al_24 58.17168 512.72565 1417.0
## s7307_In_25 69.27677 341.51958 11040.0
## s7307_In_26 72.69303 541.34315 54130.0
## s7307_In_27 76.67250 430.43214 23910.0
## s7307_In_28 64.69467 469.90434 19300.0
## s7307_In_Al_29 61.55591 423.04587 27000.0
## s1903_2 52.99266 258.27892 11530.0
## s7307_In_Al_30 67.68711 345.17162 58570.0
## s7307_In_Al_31 61.86017 430.07983 436900.0
## s7307_In_Al_32 63.36009 522.25131 535400.0
## s8473_33 46.60509 111.82943 718000.0
## s8473_34 42.98501 58.12929 355900.0
## s8473_35 42.67019 66.20358 585800.0
## s8473_36 50.82190 93.62755 356400.0
## s8473_Al_37 41.06274 66.97377 481100.0
## s8473_Al_38 39.13420 89.15160 386600.0
## s8473_Al_39 33.88237 95.32459 147200.0
## s1903_3 47.97753 132.36193 2187.0
## s8473_Al_40 34.68865 59.78735 455700.0
## s8473_In_41 60.87165 320.63430 185300.0
## s8473_In_42 54.76201 138.57475 1141000.0
## s8473_In_43 51.86837 181.12977 2180000.0
## s8473_In_44 77.85382 177.36790 1713000.0
## s8473_In_Al_45 46.79421 72.12579 1494000.0
## s8473_In_Al_46 49.66267 134.75418 1134000.0
## s8473_In_Al_47 55.51137 118.23100 1244000.0
## s8473_In_Al_48 65.17409 118.32468 852300.0
## s8353_49 46.55557 175.45869 623500.0
## s1903_4 47.32445 148.03928 743.3
## s8353_50 48.21896 229.97923 1014000.0
## s8353_51 52.71561 176.94490 1675000.0
## s8353_52 51.98827 346.81537 1288000.0
## s8353_Al_53 42.27325 266.05314 1718000.0
## s8353_Al_54 36.25757 217.40740 1046000.0
## s8353_Al_55 34.16814 240.32397 1156000.0
## s8353_Al_56 46.29699 288.70989 1952000.0
## s8353_In_57 59.61090 367.23300 1045000.0
## s8353_In_58 54.95274 295.90438 300100.0
## s8353_In_59 57.83474 279.10070 493000.0
## s1903_Al_5 39.44452 153.51728 2205.0
## s8353_In_60 65.53840 373.07982 650800.0
## s8353_In_Al_61 45.85938 337.65050 717900.0
## s8353_In_Al_62 51.55413 432.99255 450500.0
## s1903_Al_6 32.46258 141.30744 2647.0
## s1903_Al_7 41.64441 162.78310 1637.0
## s1903_Al_8 42.24058 151.88082 3126.0
## s1903_In_9 63.41701 357.71299 2034.0###Alpha richess 1903 без In - неадекватная кривая разрежения Удалить s8473_In_41
plot_rich_reads_samlenames_lm <- function(ps.f){
rish <- estimate_richness(ps.f, measures = "Observed")
reads.sum <- as.data.frame(sample_sums(ps.f))
reads.summary <- cbind(rish, reads.sum)
colnames(reads.summary) <- c("otus","reads")
reads.summary["Description"] <- rownames(ps.f@sam_data)
reads.summary["Repeats"] <- ps.f@sam_data$Description
reads.summary["Plant"] <- ps.f@sam_data$Plant
library(ggrepel)
require(ggforce)
p1 <- ggplot(data=reads.summary) + geom_point(aes(y=otus, x=log2(reads), color=Repeats),size=3) + geom_text_repel(aes(y=otus, x=log2(reads), label=Repeats)) + theme_bw()+
geom_smooth(aes(y=otus, x=log2(reads), fill=Repeats, color=Repeats),method=lm, se=FALSE, ymin = 1) + scale_x_continuous(sec.axis = sec_axis(sec.axis ~ 2**.))
# geom_mark_ellipse(aes(y = otus, x=reads, group = Repeats, label = Repeats, color = Repeats), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
return(p1)
}
plot_rich_reads_samlenames_lm(ps)
ps.f <- subset_samples(ps, sample_names(ps) != 's8473_In_41')
ps.f <- prune_taxa(taxa_sums(ps.f) > 0,ps.f)
plot_rich_reads_samlenames_lm(ps.f)
###Split
ps.f.s1903 <- prune_samples(sample_data(ps.f)$Plant %in% c("s1903"), ps.f)
ps.f.s1903 <- prune_taxa(taxa_sums(ps.f.s1903) > 0,ps.f.s1903)
ps.f.s7307 <- prune_samples(sample_data(ps.f)$Plant %in% c("s7307"), ps.f)
ps.f.s7307 <- prune_taxa(taxa_sums(ps.f.s7307) > 0,ps.f.s7307)
ps.f.s8473 <- prune_samples(sample_data(ps.f)$Plant %in% c("s8473"), ps.f)
ps.f.s8473 <- prune_taxa(taxa_sums(ps.f.s8473) > 0,ps.f.s8473)
ps.f.s8353 <- prune_samples(sample_data(ps.f)$Plant %in% c("s8353"), ps.f)
ps.f.s8353 <- prune_taxa(taxa_sums(ps.f.s8353) > 0,ps.f.s8353)
# physeq <- ps.f.s1903
# physeq@sam_data$Al
#
# physeq.Al.pos <- prune_samples(sample_data(physeq)$Al %in% c("pos"), physeq)
# physeq.Al.pos <- prune_taxa(taxa_sums(physeq.Al.pos) > 0, physeq.Al.pos)
#
# physeq.Al.neg <- prune_samples(sample_data(physeq)$Al %in% c("neg"),physeq)
# physeq.Al.neg <- prune_taxa(taxa_sums(physeq.Al.neg) > 0, physeq.Al.neg)
#
# physeq.In.pos <- prune_samples(sample_data(physeq)$Inoculation %in% c("pos"), physeq)
# physeq.In.pos <- prune_taxa(taxa_sums(physeq.In.pos) > 0,physeq.In.pos)
#
# physeq.In.neg <- prune_samples(sample_data(physeq)$Inoculation %in% c("pos"), physeq)
# physeq.In.neg <- prune_taxa(taxa_sums(physeq.In.neg) > 0,physeq.In.neg)###Beta ####Colour - plants Цвета для генотипов растений
beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
require(phyloseq)
require(ggplot2)
require(ggpubr)
require(DESeq2)
library(ggforce)
# beta_NMDS <- function(){
#normalisation. unifrac - rarefaction; wunifrac,bray - varstab
diagdds = phyloseq_to_deseq2(ps, ~ Description)
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
if (normtype =="vst")
pst <- varianceStabilizingTransformation(diagdds)
if (normtype =="log")
pst <- rlogTransformation(diagdds)
pst.dimmed <- t(as.matrix(assay(pst)))
pst.dimmed[pst.dimmed < 0.0] <- 0.0
ps.varstab <- ps
otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE)
ps.rand <- rarefy_even_depth(ps, rngseed = seed)
#beta and ordination
ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
#plotting
p1 = plot_ordination(ps, ordination.b, type="sample", color="Plant", title="NMDS - Bray",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p2 = plot_ordination(ps, ordination.u, type="sample", color="Plant", title="NMDS - unifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p3 = plot_ordination(ps, ordination.w, type="sample", color="Plant", title="NMDS - wunifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
#merge by ggpubr
p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
return(p.all)
}
beta_custom_norm_NMDS_elli(ps.f)
####Colour - Al
beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
require(phyloseq)
require(ggplot2)
require(ggpubr)
require(DESeq2)
library(ggforce)
# beta_NMDS <- function(){
#normalisation. unifrac - rarefaction; wunifrac,bray - varstab
diagdds = phyloseq_to_deseq2(ps, ~ Description)
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
if (normtype =="vst")
pst <- varianceStabilizingTransformation(diagdds)
if (normtype =="log")
pst <- rlogTransformation(diagdds)
pst.dimmed <- t(as.matrix(assay(pst)))
pst.dimmed[pst.dimmed < 0.0] <- 0.0
ps.varstab <- ps
otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE)
ps.rand <- rarefy_even_depth(ps, rngseed = seed)
#beta and ordination
ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
#plotting
p1 = plot_ordination(ps, ordination.b, type="sample", color="pH", title="NMDS - Bray",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p2 = plot_ordination(ps, ordination.u, type="sample", color="pH", title="NMDS - unifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p3 = plot_ordination(ps, ordination.w, type="sample", color="pH", title="NMDS - wunifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
#merge by ggpubr
p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
return(p.all)
}
beta_custom_norm_NMDS_elli(ps.f)
####Colour - Inoculation
beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
require(phyloseq)
require(ggplot2)
require(ggpubr)
require(DESeq2)
library(ggforce)
# beta_NMDS <- function(){
#normalisation. unifrac - rarefaction; wunifrac,bray - varstab
diagdds = phyloseq_to_deseq2(ps, ~ Description)
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
if (normtype =="vst")
pst <- varianceStabilizingTransformation(diagdds)
if (normtype =="log")
pst <- rlogTransformation(diagdds)
pst.dimmed <- t(as.matrix(assay(pst)))
pst.dimmed[pst.dimmed < 0.0] <- 0.0
ps.varstab <- ps
otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE)
ps.rand <- rarefy_even_depth(ps, rngseed = seed)
#beta and ordination
ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
#plotting
p1 = plot_ordination(ps, ordination.b, type="sample", color="Inoculation", title="NMDS - Bray",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p2 = plot_ordination(ps, ordination.u, type="sample", color="Inoculation", title="NMDS - unifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p3 = plot_ordination(ps, ordination.w, type="sample", color="Inoculation", title="NMDS - wunifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
#merge by ggpubr
p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
return(p.all)
}
beta_custom_norm_NMDS_elli(ps.f)
####Colour - Mic
beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
require(phyloseq)
require(ggplot2)
require(ggpubr)
require(DESeq2)
library(ggforce)
# beta_NMDS <- function(){
#normalisation. unifrac - rarefaction; wunifrac,bray - varstab
diagdds = phyloseq_to_deseq2(ps, ~ Description)
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
if (normtype =="vst")
pst <- varianceStabilizingTransformation(diagdds)
if (normtype =="log")
pst <- rlogTransformation(diagdds)
pst.dimmed <- t(as.matrix(assay(pst)))
pst.dimmed[pst.dimmed < 0.0] <- 0.0
ps.varstab <- ps
otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE)
ps.rand <- rarefy_even_depth(ps, rngseed = seed)
#beta and ordination
ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
#plotting
p1 = plot_ordination(ps, ordination.b, type="sample", color="Mic", title="NMDS - Bray",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p2 = plot_ordination(ps, ordination.u, type="sample", color="Mic", title="NMDS - unifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p3 = plot_ordination(ps, ordination.w, type="sample", color="Mic", title="NMDS - wunifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
#merge by ggpubr
p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
return(p.all)
}
beta_custom_norm_NMDS_elli(ps.f)
####Colour - SeedMg
beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
require(phyloseq)
require(ggplot2)
require(ggpubr)
require(DESeq2)
library(ggforce)
# beta_NMDS <- function(){
#normalisation. unifrac - rarefaction; wunifrac,bray - varstab
diagdds = phyloseq_to_deseq2(ps, ~ Description)
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
if (normtype =="vst")
pst <- varianceStabilizingTransformation(diagdds)
if (normtype =="log")
pst <- rlogTransformation(diagdds)
pst.dimmed <- t(as.matrix(assay(pst)))
pst.dimmed[pst.dimmed < 0.0] <- 0.0
ps.varstab <- ps
otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE)
ps.rand <- rarefy_even_depth(ps, rngseed = seed)
#beta and ordination
ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
#plotting
p1 = plot_ordination(ps, ordination.b, type="sample", color="SoilAl", title="NMDS - Bray",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p2 = plot_ordination(ps, ordination.u, type="sample", color="SoilAl", title="NMDS - unifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p3 = plot_ordination(ps, ordination.w, type="sample", color="SoilAl", title="NMDS - wunifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
#merge by ggpubr
p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
return(p.all)
}
beta_custom_norm_NMDS_elli(ps.f)
####Colour - SoilK
beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
require(phyloseq)
require(ggplot2)
require(ggpubr)
require(DESeq2)
library(ggforce)
# beta_NMDS <- function(){
#normalisation. unifrac - rarefaction; wunifrac,bray - varstab
diagdds = phyloseq_to_deseq2(ps, ~ Description)
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
if (normtype =="vst")
pst <- varianceStabilizingTransformation(diagdds)
if (normtype =="log")
pst <- rlogTransformation(diagdds)
pst.dimmed <- t(as.matrix(assay(pst)))
pst.dimmed[pst.dimmed < 0.0] <- 0.0
ps.varstab <- ps
otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE)
ps.rand <- rarefy_even_depth(ps, rngseed = seed)
#beta and ordination
ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
#plotting
p1 = plot_ordination(ps, ordination.b, type="sample", color="SoilK", title="NMDS - Bray",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p2 = plot_ordination(ps, ordination.u, type="sample", color="SoilK", title="NMDS - unifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
p3 = plot_ordination(ps, ordination.w, type="sample", color="SoilK", title="NMDS - wunifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3)
#merge by ggpubr
p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, font.label = list(size = 12, face = "bold", color ="black"))
return(p.all)
}
beta_custom_norm_NMDS_elli(ps.f)
###PERMANOVA All Сначала для всего
permanova.forloop.noNestedPlant <- function(factor){
require(vegan)
require(phyloseq)
dist <- phyloseq::distance(physeq, "bray")
metadata <- as(sample_data(physeq@sam_data), "data.frame")
ad <- adonis2(as.formula(paste( "dist ~ ", factor)), data = metadata)
ad <- cbind2(ad[1,][3], ad[1,][5])
return(ad)
}
physeq <- ps.f
permanova.forloop.pos.noPlant <- possibly(permanova.forloop.noNestedPlant, otherwise = NA)
out <- map(colnames(physeq@sam_data[,3:111]), permanova.forloop.pos.noPlant)## Loading required package: vegan## Loading required package: permute## Loading required package: lattice## This is vegan 2.5-6out.d.noPlant <- do.call("rbind", out)
out.d.noPlant[order(out.d.noPlant$R2, decreasing = TRUE),]## R2 Pr(>F)
## Plant 0.17075594 0.001
## BineCu 0.07656020 0.001
## BineP 0.07402408 0.001
## QRTPCR 0.07306023 0.001
## SeedN 0.07150167 0.001
## SeedP 0.07004923 0.001
## SeedMg 0.06696187 0.001
## BineS 0.06617572 0.001
## BineNi 0.06361449 0.001
## BineCo 0.06317789 0.001
## BinePerPlantK 0.06222685 0.001
## BineMg 0.06172737 0.001
## BineM 0.06065222 0.001
## SeedMo 0.05941339 0.001
## BinePerPlantAl 0.05932040 0.001
## BineSeedPerPlantB 0.05894444 0.001
## BineB 0.05873916 0.001
## SeedS 0.05802071 0.001
## NitBine 0.05597057 0.001
## SeedCo 0.05447627 0.001
## BinePerPlantMn 0.05413680 0.001
## SeedCu 0.05397711 0.001
## BineSeedPerPlantNi 0.05357855 0.001
## BineSeedPerPlantMg 0.05300908 0.001
## Mic 0.05275166 0.001
## Arb 0.05256082 0.001
## BinePerPlantNi 0.05181934 0.001
## SoilZn 0.05058103 0.001
## BineMn 0.04847053 0.001
## BineAl 0.04795307 0.001
## BinePerPlantCo 0.04775298 0.001
## pH 0.04724065 0.001
## Al 0.04709379 0.001
## SeedMn 0.04691304 0.001
## BineSeedM 0.04409116 0.001
## BinePerPlantMg 0.04402702 0.001
## BineCa 0.04263399 0.001
## BineZn 0.04127619 0.001
## SeedMOne 0.03968708 0.001
## NitPerPlant 0.03965970 0.003
## SeedZn 0.03922620 0.004
## SeedNi 0.03917569 0.002
## BineK 0.03907539 0.003
## BinePerPLantZn 0.03862327 0.001
## BineSeedPerPlantK 0.03810946 0.001
## SeedK 0.03804667 0.001
## BineFe 0.03784102 0.002
## SeedPerPlantCo 0.03775230 0.002
## BinePerPlantFe 0.03739246 0.001
## BineSeedPerPlantMo 0.03661258 0.001
## SeedFe 0.03646883 0.004
## BineMo 0.03645192 0.001
## BinePerPlantSe 0.03637721 0.003
## BinePerPlantCu 0.03617355 0.003
## SeedPerPlantB 0.03577249 0.003
## BinePerPLantCa 0.03552353 0.002
## SeedPerPlantMo 0.03506122 0.003
## BineSeedPerPlantCo 0.03501755 0.002
## SeedPerPlantMn 0.03454685 0.004
## SeedPerPlantZn 0.03441914 0.002
## BineSeedPerPlantZn 0.03435604 0.003
## SeedPerPlantCa 0.03430083 0.003
## NitSeed 0.03424285 0.003
## SeedM 0.03362756 0.003
## BinePerPlantMo 0.03338044 0.009
## NitBineSeedPerPlant 0.03267691 0.004
## SeedPerPlantP 0.03228801 0.008
## BineSeedPerPlantCa 0.03173782 0.006
## SeedPerPlantMg 0.03167185 0.005
## BineSeedPerPlantFe 0.03160792 0.004
## SoilAl 0.03160118 0.006
## SeedPerPlantS 0.03135039 0.008
## NitSeedPerPlant 0.03128629 0.007
## SeedPerPlantFe 0.03126599 0.011
## NitSeed15 0.03126430 0.009
## BineSeedPerPlantS 0.03117444 0.010
## SeedPerPlantK 0.03112528 0.012
## Nit15SeedPerPlant 0.03035645 0.012
## BineSeedPerPlantP 0.03034206 0.006
## BinePerPlantB 0.03029081 0.008
## SoilB 0.02991491 0.011
## SeedAl 0.02985167 0.011
## SeedPerPlantAl 0.02839867 0.017
## BineSeedPerPlantAl 0.02839867 0.021
## BineSeedPerPlantS.1 0.02826067 0.014
## BineSeedPerPlantCu 0.02760383 0.013
## SoilMo 0.02754012 0.013
## SeedPerPlantCu 0.02743183 0.016
## SoilCa 0.02743130 0.026
## SeedPerPlantNi 0.02717142 0.036
## NodPerPlant 0.02610302 0.032
## SoilMg 0.02578881 0.036
## Nit15BineSeedPerPlant 0.02529181 0.036
## NodPerPlant.1 0.02524678 0.034
## SoilK 0.02518501 0.031
## SoilFe 0.02513551 0.038
## SoilMn 0.02463368 0.053
## Nit15 0.02457516 0.034
## Inoculation 0.02438306 0.043
## SeedB 0.02292101 0.082
## BinePerPlantP 0.02213092 0.100
## SoilNi 0.01959758 0.194
## SoilCo 0.01959202 0.186
## Nit15PerPlant 0.01875959 0.235
## SoilCu 0.01833341 0.278
## Ves 0.01756428 0.331
## SoilP 0.01712179 0.378
## SoilS 0.01562212 0.536
## 41 NA NA###PERMANOVA Plant Достоверность линейной вариации бета-разнообразия сообщества(Брей) в зависимости от факторов при разделении по генотипу растений. Description - description Достоверность после пермутаций для Фишера высокая, но низкий коэффицент детерминации(мало объяснённой дисперсии) для большой доли факторов. CCA нецелесообразен.
permanova.forloop <- function(factor){
require(vegan)
require(phyloseq)
dist <- phyloseq::distance(physeq, "bray")
metadata <- as(sample_data(physeq@sam_data), "data.frame")
ad <- adonis2(as.formula(paste( "dist ~", "Plant/", factor)), data = metadata)
ad <- cbind2(ad[2,][3], ad[2,][5])
return(ad)
}
physeq <- ps.f
permanova.forloop.pos <- possibly(permanova.forloop, otherwise = NA)
out <- map(colnames(physeq@sam_data[,3:111]), permanova.forloop.pos)
out.d <- do.call("rbind", out)
out.d[order(out.d$R2, decreasing = TRUE),]## R2 Pr(>F)
## Residual 0.82924406 NA
## Plant:Inoculation 0.10567624 0.001
## Plant:BineSeedPerPlantCa 0.10312438 0.001
## Plant:BinePerPlantB 0.10309824 0.001
## Plant:BinePerPLantZn 0.10080769 0.001
## Plant:NitBineSeedPerPlant 0.10060753 0.001
## Plant:NitSeedPerPlant 0.09742070 0.001
## Plant:Nit15PerPlant 0.09697827 0.002
## Plant:BinePerPlantMg 0.09575624 0.001
## Plant:BinePerPlantMn 0.09431737 0.001
## Plant:BineSeedPerPlantNi 0.09326400 0.001
## Plant:BineK 0.09249762 0.002
## Plant:BineZn 0.09194542 0.002
## Plant:BineSeedPerPlantK 0.09171721 0.001
## Plant:BinePerPlantFe 0.09071694 0.002
## Plant:BineB 0.09062160 0.001
## Plant:NitPerPlant 0.09027297 0.001
## Plant:BinePerPlantCo 0.08973200 0.002
## Plant:pH 0.08970497 0.001
## Plant:Al 0.08943447 0.001
## Plant:BineMn 0.08886668 0.002
## Plant:BineMg 0.08861357 0.001
## Plant:BineP 0.08823352 0.003
## Plant:NitBine 0.08810180 0.001
## Plant:BinePerPlantCu 0.08809141 0.004
## Plant:BineCu 0.08730111 0.003
## Plant:NodPerPlant 0.08727612 0.002
## Plant:BineSeedPerPlantS.1 0.08726452 0.002
## Plant:BinePerPlantP 0.08722132 0.001
## Plant:BineSeedM 0.08699548 0.002
## Plant:BinePerPlantNi 0.08562760 0.002
## Plant:BineSeedPerPlantMg 0.08530752 0.002
## Plant:SeedPerPlantS 0.08525114 0.003
## Plant:NitSeed15 0.08522692 0.004
## Plant:BinePerPlantK 0.08427374 0.004
## Plant:SeedZn 0.08340692 0.003
## Plant:Nit15 0.08300144 0.006
## Plant:BineCo 0.08271660 0.004
## Plant:SeedM 0.08190432 0.003
## Plant:BineNi 0.08186331 0.007
## Plant:BineMo 0.08168311 0.003
## Plant:BineSeedPerPlantCo 0.08143222 0.007
## Plant:SeedPerPlantMg 0.08126044 0.006
## Plant:BineSeedPerPlantS 0.08119409 0.003
## Plant:SoilNi 0.08091238 0.005
## Plant:SoilMn 0.08074409 0.011
## Plant:BinePerPLantCa 0.08074122 0.005
## Plant:BineSeedPerPlantMo 0.08073668 0.004
## Plant:NodPerPlant.1 0.08022402 0.008
## Plant:BineSeedPerPlantFe 0.08021099 0.008
## Plant:SoilP 0.08014552 0.008
## Plant:SeedN 0.07936770 0.007
## Plant:SeedPerPlantMo 0.07918742 0.003
## Plant:BineSeedPerPlantB 0.07895952 0.012
## Plant:Nit15BineSeedPerPlant 0.07892095 0.007
## Plant:BinePerPlantAl 0.07818390 0.015
## Plant:BinePerPlantMo 0.07813564 0.020
## Plant:BineM 0.07811980 0.009
## Plant:SeedMo 0.07757696 0.012
## Plant:BineSeedPerPlantZn 0.07755556 0.014
## Plant:SeedPerPlantZn 0.07744414 0.010
## Plant:NitSeed 0.07734304 0.015
## Plant:SeedPerPlantK 0.07685454 0.015
## Plant:SeedPerPlantFe 0.07682009 0.021
## Plant:SeedPerPlantB 0.07652472 0.021
## Plant:BineSeedPerPlantCu 0.07611424 0.012
## Plant:SeedPerPlantP 0.07591752 0.013
## Plant:SeedB 0.07585180 0.016
## Plant:BineCa 0.07503379 0.023
## Plant:SoilCo 0.07387764 0.029
## Plant:BineSeedPerPlantP 0.07386436 0.033
## Plant:SeedPerPlantCu 0.07381266 0.027
## Plant:SoilFe 0.07325843 0.033
## Plant:BineAl 0.07310608 0.031
## Plant:SoilAl 0.07270873 0.033
## Plant:SeedMOne 0.07223417 0.049
## Plant:SoilS 0.07153259 0.042
## Plant:SoilMo 0.07127906 0.043
## Plant:Arb 0.07125478 0.058
## Plant:BineFe 0.07124595 0.045
## Plant:BineS 0.07109973 0.063
## Plant:Mic 0.07108358 0.043
## Plant:SeedPerPlantAl 0.06792219 0.096
## Plant:BineSeedPerPlantAl 0.06792219 0.106
## Plant:BinePerPlantSe 0.06786741 0.104
## Plant:SeedPerPlantCo 0.06670524 0.120
## Plant:SeedFe 0.06629690 0.128
## Plant:SeedS 0.06627485 0.129
## Plant:SoilB 0.06596593 0.150
## Plant:SeedPerPlantNi 0.06572613 0.146
## Plant:SeedPerPlantCa 0.06569051 0.143
## Plant:SoilZn 0.06472316 0.208
## Plant:SeedMg 0.06466667 0.196
## Plant:SeedNi 0.06420806 0.186
## Plant:SoilCa 0.06355515 0.198
## Plant:SeedPerPlantMn 0.06242943 0.231
## Plant:QRTPCR 0.06180398 0.287
## Plant:SeedMn 0.06166013 0.289
## Plant:SeedCo 0.06044735 0.339
## Plant:Nit15SeedPerPlant 0.05938731 0.376
## Plant:SeedK 0.05916504 0.416
## Plant:Ves 0.05728376 0.503
## Plant:SeedAl 0.05596183 0.578
## Plant:SeedCu 0.05515625 0.636
## Plant:SeedP 0.05224552 0.797
## Plant:SoilCu 0.05116867 0.806
## Plant:SoilK 0.04978848 0.893
## Plant:SoilMg 0.04925077 0.911
## 41 NA NA###Preprocessing tree
beta_custom_norm_NMDS_elli <- function(ps, seed = 7888, normtype="vst", color="Repeats"){
require(phyloseq)
require(ggplot2)
require(ggpubr)
require(DESeq2)
library(ggforce)
# beta_NMDS <- function(){
#normalisation. unifrac - rarefaction; wunifrac,bray - varstab
diagdds = phyloseq_to_deseq2(ps, ~ Description)
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
if (normtype =="vst")
pst <- varianceStabilizingTransformation(diagdds)
if (normtype =="log")
pst <- rlogTransformation(diagdds)
pst.dimmed <- t(as.matrix(assay(pst)))
pst.dimmed[pst.dimmed < 0.0] <- 0.0
ps.varstab <- ps
otu_table(ps.varstab) <- otu_table(pst.dimmed, taxa_are_rows = FALSE)
ps.rand <- rarefy_even_depth(ps, rngseed = seed)
#beta and ordination
ordination.b <- ordinate(ps.varstab, "NMDS", "bray")
ordination.u <- ordinate(ps.rand, "NMDS", "unifrac")
ordination.w <- ordinate(ps.varstab, "NMDS", "wunifrac")
#plotting
p1 = plot_ordination(ps, ordination.b, type="sample", color="Description", title="NMDS - Bray",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) +
geom_mark_ellipse(aes(group = Description, label = Description), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
p2 = plot_ordination(ps, ordination.u, type="sample", color="Description", title="NMDS - unifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) +
geom_mark_ellipse(aes(group = Description, label = Description), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
p3 = plot_ordination(ps, ordination.w, type="sample", color="Description", title="NMDS - wunifrac",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) + geom_point(size = 3) +
geom_mark_ellipse(aes(group = Description, label = Description), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
#merge by ggpubr
p.all <- ggarrange(p1, p2, p3, ncol = 3 , nrow = 1, common.legend = TRUE, legend = "none", font.label = list(size = 12, face = "bold", color ="black"))
return(p.all)
}
beta_custom_norm_NMDS_elli(ps.f.s7307)
physeq <- ps.f.s7307
permanova.forloop.pos.noPlant <- possibly(permanova.forloop.noNestedPlant, otherwise = NA)
out <- map(colnames(physeq@sam_data[,3:111]), permanova.forloop.pos.noPlant)
out.d.noPlant <- do.call("rbind", out)
out.d.noPlant[order(out.d.noPlant$R2, decreasing = TRUE),]## R2 Pr(>F)
## Nit15 0.14429270 0.001
## BinePerPlantMn 0.14351601 0.001
## Al 0.14273728 0.001
## BineMn 0.14267536 0.002
## BineMo 0.14026601 0.001
## SeedPerPlantMo 0.13956186 0.001
## BineSeedPerPlantNi 0.13913638 0.001
## BineZn 0.13871687 0.002
## SeedMo 0.13827755 0.001
## BinePerPlantMo 0.13762085 0.001
## BinePerPLantZn 0.13612224 0.002
## BineMg 0.13596639 0.001
## NitBine 0.13365037 0.001
## SoilFe 0.13256085 0.001
## pH 0.13203859 0.001
## SeedPerPlantMg 0.13019866 0.001
## BineB 0.13010512 0.002
## SeedM 0.12962441 0.001
## BineCo 0.12940760 0.002
## SoilAl 0.12932760 0.001
## SeedN 0.12914106 0.001
## BinePerPlantMg 0.12904541 0.002
## NitSeed15 0.12805301 0.001
## Nit15PerPlant 0.12749082 0.001
## SoilMo 0.12394203 0.001
## BineSeedPerPlantP 0.12370146 0.003
## BinePerPlantB 0.12132397 0.001
## BineSeedPerPlantCa 0.12121921 0.002
## SeedPerPlantS 0.12059291 0.003
## NitSeedPerPlant 0.12037305 0.002
## SeedPerPlantAl 0.11803325 0.001
## BineSeedPerPlantAl 0.11803325 0.003
## BineNi 0.11741726 0.003
## BineK 0.11685152 0.002
## NitBineSeedPerPlant 0.11613362 0.003
## BineSeedM 0.11337527 0.003
## BineP 0.11141178 0.003
## Nit15BineSeedPerPlant 0.10698543 0.009
## BineSeedPerPlantS 0.10697161 0.007
## BineAl 0.10686531 0.004
## SeedPerPlantP 0.10648852 0.008
## SoilB 0.10469707 0.007
## SeedPerPlantCu 0.10459310 0.006
## BineSeedPerPlantCu 0.10391610 0.014
## Arb 0.10267653 0.015
## SeedPerPlantK 0.09815841 0.014
## NodPerPlant 0.09586943 0.025
## BineSeedPerPlantFe 0.09465462 0.029
## SeedMn 0.09456568 0.041
## SeedPerPlantFe 0.09173730 0.036
## BinePerPlantCo 0.09109106 0.039
## BineCu 0.09017547 0.047
## SeedZn 0.08943917 0.054
## Mic 0.08847640 0.056
## BineSeedPerPlantB 0.08840077 0.061
## BinePerPlantAl 0.08802505 0.063
## SeedMOne 0.08763536 0.050
## NitSeed 0.08755915 0.056
## SoilP 0.08751893 0.070
## Nit15SeedPerPlant 0.08744662 0.056
## BinePerPlantCu 0.08725060 0.075
## SeedCa 0.08538919 0.059
## SeedPerPlantNi 0.08533916 0.067
## BineSeedPerPlantMo 0.08468381 0.088
## SoilS 0.08367008 0.091
## QRTPCR 0.08366397 0.081
## SeedPerPlantCo 0.08282397 0.099
## SoilMn 0.08157065 0.114
## BineFe 0.08047536 0.128
## NitPerPlant 0.07990730 0.122
## SeedPerPlantB 0.07883850 0.140
## BinePerPlantP 0.07853045 0.156
## BinePerPlantNi 0.07702555 0.165
## SeedFe 0.07620636 0.178
## Inoculation 0.07495405 0.189
## SeedPerPlantCa 0.07467086 0.200
## BineSeedPerPlantS.1 0.07459902 0.199
## SeedNi 0.07431947 0.200
## BineCa 0.07419084 0.216
## SeedPerPlantMn 0.07309231 0.261
## SeedAl 0.07207949 0.265
## SeedCo 0.07198667 0.259
## SeedS 0.07195090 0.277
## SoilNi 0.07175894 0.261
## SeedMg 0.07145025 0.286
## BinePerPlantK 0.07087492 0.295
## BineM 0.07080377 0.282
## BinePerPlantFe 0.07066518 0.296
## SoilCo 0.07038723 0.322
## BineSeedPerPlantMg 0.06938492 0.330
## Ves 0.06869172 0.372
## BineSeedPerPlantK 0.06867123 0.358
## SeedB 0.06846567 0.380
## SoilCa 0.06764562 0.390
## BineSeedPerPlantZn 0.06641741 0.418
## SeedPerPlantZn 0.06612233 0.449
## BineS 0.06480913 0.471
## BinePerPlantSe 0.05953971 0.676
## SeedP 0.05840058 0.730
## SeedK 0.05839217 0.733
## SoilK 0.05815521 0.764
## SoilMg 0.05815521 0.767
## BineSeedPerPlantCo 0.05807223 0.757
## SeedCu 0.05773137 0.767
## BinePerPLantCa 0.05640948 0.833
## NodPerPlant.1 0.05630432 0.840
## SoilCu 0.05454111 0.879
## SoilZn 0.05215041 0.937
## 1 NA NA####Shitty alpha violins
library(ggpubr)
alpha.custom <- function(ps.f.i, arrga = "PD"){
require(picante)
pd <- pd(ps.f.i@otu_table@.Data, ps.f.i@phy_tree)
pd1 <- estimate_richness(ps.f.i, measures=c("Observed", "InvSimpson", "Shannon"))
pd <- cbind(pd,ps.f.i@sam_data, pd1 )
bmi <- levels(as.factor(pd$Description))
bmi.pairs <- combn(seq_along(bmi), 2, simplify = FALSE, FUN = function(i)bmi[i])
p1 <- ggviolin(pd, x = "Description", y = arrga,
add = "boxplot", fill = "Description") + stat_compare_means(comparisons = bmi.pairs, method = "wilcox.test") +
scale_x_discrete(limits = c("s7307","s7307_In", "s7307_Al", "s7307_In_Al")) + theme(axis.title.x = element_blank(), legend.title = element_blank())
return(p1)
}
p.alpha.Cdt.oo <- alpha.custom(physeq, arrga = "Observed")## Loading required package: picante## Loading required package: ape##
## Attaching package: 'ape'## The following object is masked from 'package:ggpubr':
##
## rotate## Loading required package: nlme##
## Attaching package: 'nlme'## The following object is masked from 'package:IRanges':
##
## collapse## The following object is masked from 'package:dplyr':
##
## collapsep.alpha.Cdt.sh <- alpha.custom(physeq, arrga = "Shannon")
p.alpha.Cdt.is <- alpha.custom(physeq, arrga = "InvSimpson")
p.alpha.Cdt.pd <- alpha.custom(physeq, arrga = "PD")
p1 <- ggarrange(p.alpha.Cdt.oo, p.alpha.Cdt.sh,p.alpha.Cdt.is, p.alpha.Cdt.pd , ncol = 4 ,label.x = 0.105, nrow = 1, common.legend = TRUE)
p1
###Split dataset by Al and In
physeq <- subset_taxa(physeq, !is.na(Phylum))
physeq.In <- prune_samples(sample_data(physeq)$Inoculation %in% c("+"), physeq)
physeq.In <- prune_taxa(taxa_sums(physeq.In) > 0, physeq.In)
physeq.wIn <- prune_samples(sample_data(physeq)$Inoculation %in% c("-"), physeq)
physeq.wIn <- prune_taxa(taxa_sums(physeq.wIn) > 0, physeq.wIn)####Correct Al/In meta
physeq.In@sam_data$Al <- c("neg", "neg", "neg", "neg", "pos", "pos", "pos", "pos")
physeq.wIn@sam_data$Al <- c("neg", "neg", "neg", "neg", "pos", "pos", "pos", "pos")####Improve on des function - add a required factor(with as.formula function)
des_w_simper <- function(ps, factor){
require(DESeq2)
require(vegan)
require(tibble)
require(phyloseq)
diagdds = phyloseq_to_deseq2(ps, as.formula(paste( "~", factor)))
diagdds = estimateSizeFactors(diagdds, type="poscounts")
diagdds = estimateDispersions(diagdds, fitType = "local")
diagdds = DESeq(diagdds)
samp <-sample_data(ps)
aggdata <- t(aggregate.data.frame(as.data.frame(as.data.frame(t(diagdds@assays@data$mu))), by=list(samp[[factor]]), median))
colnames(aggdata) <- aggdata[1,]
aggdata <- aggdata[-1,]
res = results(diagdds)
res.df <- as.data.frame(res)
nice <- cbind(res.df, as.data.frame(ps@tax_table@.Data[rownames(res.df),]), as.data.frame(aggdata)[rownames(res.df),])
}
des.In <- des_w_simper(physeq.In, "Al")## Warning in DESeqDataSet(se, design = design, ignoreRank): some variables in
## design formula are characters, converting to factorsdes.wIn <- des_w_simper(physeq.wIn, "Al")## Warning in DESeqDataSet(se, design = design, ignoreRank): some variables in
## design formula are characters, converting to factors####filtration ASVs in the DESeq2 result tables by abundanse and change confidence level После порога по среденему значению 60 ридов после нормирования и p-value с поправкой на множественное сравнение: - для горизонта ay - 37 отличающихся филотипа - для горизонта с - 47 отличающихся филотипа
filter.des <- function(des, alpha=0.1, baseMean = 15){
des <- des[(des$padj < alpha), ]
des <- des[(des$baseMean > baseMean),]
#des <- des[(des$log2FoldChange > 0),]
des <- des[(is.na(des$padj) != TRUE),]
return(des)
}
alpha.c <- 0.1
baseMean.c <- 15
des.In.filt <- filter.des(des.In, alpha = alpha.c, baseMean = baseMean.c)
len.c <- length(rownames(des.In.filt))
paste0("length des.In after filtation with param: alpha - ", alpha.c, ", baseMean - ", baseMean.c, " ==> ", len.c)## [1] "length des.In after filtation with param: alpha - 0.1, baseMean - 15 ==> 21"alpha.ay <- 0.1
baseMean.ay <- 15
des.wIn.filt <- filter.des(des.wIn, alpha = alpha.ay, baseMean = baseMean.ay)
len.ay <- length(rownames(des.wIn.filt))
paste0("length des.wIn after filtation with param: alpha - ", alpha.ay, ", baseMean - ", baseMean.ay, " ==> ", len.ay)## [1] "length des.wIn after filtation with param: alpha - 0.1, baseMean - 15 ==> 31"####Tree for soil changed taxa
list.both <- c(rownames(des.In.filt), rownames(des.wIn.filt))
ps.changed <- prune_taxa(list.both, physeq)
phyloseq <- ps.changed
library(ggtree)
library(tidyverse)
tree <- phyloseq@phy_tree
taxa.pruned <- as.data.frame(phyloseq@tax_table@.Data)
taxa.pruned <- taxa.pruned %>% mutate_all(as.character)
old.tips <- tree$tip.label
matches <- regmatches(tree$tip.label, gregexpr("[[:digit:]]+", tree$tip.label))
taxa.pruned$number <- as.numeric(unlist(matches))
taxa.pruned$taxa <- ifelse(is.na(taxa.pruned$Genus), taxa.pruned$Family, taxa.pruned$Genus)
taxa.pruned[taxa.pruned == "Burkholderia-Caballeronia-Paraburkholderia"] <- "Burkholderia"
taxa.pruned[taxa.pruned == "Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium"] <- "Pararhizobium"
taxa.pruned$taxa2 <- ifelse(is.na(taxa.pruned$Species), with(taxa.pruned, paste0(taxa)), with(taxa.pruned, paste0(taxa, " ", Species )))
taxa.pruned$taxa3 <- ifelse(taxa.pruned$Phylum == "Proteobacteria", with(taxa.pruned, paste0(taxa.pruned$number, ".", taxa2, " // ", Class)), with(taxa.pruned, paste0(taxa.pruned$number, ".", taxa2, " // ", Phylum)))
tree$tip.label <- taxa.pruned$taxa3
p <- ggtree(tree, ladderize = F) + geom_tiplab(mapping = aes(), align=TRUE, linesize=.5) + xlim(NA, 4)## Warning: `data_frame()` is deprecated as of tibble 1.1.0.
## Please use `tibble()` instead.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_warnings()` to see where this warning was generated.## Warning: `mutate_()` is deprecated as of dplyr 0.7.0.
## Please use `mutate()` instead.
## See vignette('programming') for more help
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_warnings()` to see where this warning was generated.des.wIn####Add log2FoldChange for tree. Red - prevalence in CZ, blue - in SP.
t.ay <- as_tibble(des.wIn, rownames = "id") %>%
filter(id %in% phyloseq@phy_tree$tip.label)%>%
select(id, log2FoldChange) %>%
dplyr::rename(notIn = log2FoldChange)
t.c <- as_tibble(des.In, rownames = "id") %>%
filter(id %in% phyloseq@phy_tree$tip.label) %>%
select(id, log2FoldChange) %>%
dplyr::rename(In = log2FoldChange)
t.all <- full_join(t.ay, t.c)
names.d <- cbind(long = tree$tip.label, short = old.tips) %>% data.frame(row.names = "short")
t.names <- as_tibble(names.d, rownames = "id")
d.all.tips <- full_join(t.names, t.all) %>% select(-c(id)) %>%
as.data.frame() %>% column_to_rownames("long")
p2 <- gheatmap(p, d.all.tips, offset=2, width=0.8) + scale_colour_gradientn(colours = c("blue", "white", "red"),na.value = "grey50", guide = "colourbar",aesthetics = "fill")
p2 <- p2 + labs(fill = "L2FC without Al/ Al")otus.ay.rel <- t(apply(otu_table(physeq.wIn), 1, function(x) x / sum(x)))
otus.c.rel <- t(apply(otu_table(physeq.In), 1, function(x) x / sum(x)))
# for ay
as_tibble(t(otus.ay.rel ), rownames = "id" ) %>%
filter(id %in% phyloseq@phy_tree$tip.label) %>%
select(id) -> id.ay
as_tibble(t(otus.ay.rel), rownames = "id" ) %>%
filter(id %in% phyloseq@phy_tree$tip.label) %>%
select_if(is.numeric) %>%
replace(is.na(.), 0) %>%
mutate(ayMean=rowMeans(.)) %>%
select(ayMean) -> res.ay
res.ayMean.rel <- cbind2(id.ay,res.ay)
# for c
as_tibble(t(otus.c.rel), rownames = "id" ) %>%
filter(id %in% phyloseq@phy_tree$tip.label) %>%
select(id) -> id.c
as_tibble(t(otus.c.rel), rownames = "id" ) %>%
filter(id %in% phyloseq@phy_tree$tip.label) %>%
select_if(is.numeric) %>%
replace(is.na(.), 0) %>%
mutate(cMean=rowMeans(.)) %>%
select(cMean) -> res.c
res.cMean.rel <- cbind2(id.c, res.c)
all.resMean.rel <- full_join(res.ayMean.rel, res.cMean.rel)
all.resMean.rel %>% replace(is.na(.), 0) -> all.resMean.rel
all.resMean.rel$ayMean <- 0 - all.resMean.rel$ayMean
all.resMean.rel.melted <- reshape2::melt(all.resMean.rel, id=c("id"))
library(reshape2)
library(ggstance)
all.resMean.rel.melted <- melt(all.resMean.rel, id=c("id"))
first.tree <- phyloseq@phy_tree
ids.tree <- data.frame(id = first.tree$tip.label, id.taxa = tree$tip.label)
some.join <- full_join(ids.tree, all.resMean.rel.melted)
some.join <- subset(some.join, select = -c(id))
some.join["numbers"] <- ifelse(some.join$value == 0, NA, abs(some.join$value))
some.join$value <- some.join$value*100
some.join["position"] <- ifelse(some.join$value >= 0, some.join$value + 0.5, some.join$value - 0.5)
p4 <- facet_plot(p2, panel = "no / In", data = some.join, geom = geom_barh,
mapping = aes(x = value, label=value), color = "salmon", fill = "white",
stat='identity')## Warning: Ignoring unknown aesthetics: labelp4 <- facet_plot(p4, geom=geom_text , data = some.join, mapping=aes(x=position,label=round(numbers*100, digits = 2)), panel = "no / In")
library(gtable)
library(grid)
gt <- ggplot_gtable(ggplot_build(p4))
gt$widths[7] <- 0.5*gt$widths[7] # in this case it was colmun 7 - reduce the width by a half
plot(gt) # plot with grid draw
export data to rf analisys
Code from the plates_plos data. Normalisation by vst/DESeq by recommended param
So many beta plots
without normalisation PCoA
ordination.pure <- phyloseq::ordinate(ps.f, "PCoA", "bray")
p.b.br.wn.pcoa <- plot_ordination(ps.f, ordination.pure, type="sample", color="pH", title="PCoA - Bray -without normalisation",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
geom_point(size = 3) +
geom_text_repel(label = rownames(ordination.pure$vectors), size = 3)
p.b.br.wn.pcoa
without normalisation NMDS
ordination.pure <- phyloseq::ordinate(ps.f, "NMDS", "bray")## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.1224277
## Run 1 stress 0.1363156
## Run 2 stress 0.1346682
## Run 3 stress 0.1343889
## Run 4 stress 0.1388261
## Run 5 stress 0.1330684
## Run 6 stress 0.1274912
## Run 7 stress 0.1348295
## Run 8 stress 0.1429004
## Run 9 stress 0.1288148
## Run 10 stress 0.1241632
## Run 11 stress 0.1277002
## Run 12 stress 0.13639
## Run 13 stress 0.1364752
## Run 14 stress 0.1415925
## Run 15 stress 0.1458307
## Run 16 stress 0.128854
## Run 17 stress 0.1385411
## Run 18 stress 0.1274619
## Run 19 stress 0.1368249
## Run 20 stress 0.1405491
## *** No convergence -- monoMDS stopping criteria:
## 4: no. of iterations >= maxit
## 16: stress ratio > sratmaxp.b.br.wn.nmds <- plot_ordination(ps.f, ordination.pure, type="sample", color="pH", title="NMDS - Bray - without normalisation",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
geom_point(size = 3) +
geom_text_repel(label = rownames(ordination.pure$points), size = 3)
p.b.br.wn.nmds
VST - design - repeats NMDS
physeq <- ps.f
veganifyOTU <- function(physeq){
require(phyloseq)
if(taxa_are_rows(physeq)){physeq <- t(physeq)}
return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
otus <- t(otus)
deseq_counts_by_desc <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Description) ## converting counts to integer modedeseq_counts_vst_by_desc <- varianceStabilizingTransformation(deseq_counts_by_desc)
vst_trans_count_tab_descr <- assay(deseq_counts_vst_by_desc)
otu.table.desc <- otu_table(vst_trans_count_tab_descr, taxa_are_rows = TRUE)
ps.vst.desc <- physeq
otu_table(ps.vst.desc) <- otu.table.desc## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'ordination.vst.desc <- ordinate(ps.vst.desc, "PCoA", "bray")
p.b.br.vstr.pcoa <- plot_ordination(ps.vst.desc, ordination.vst.desc, type="sample", color="pH", title="PCoA - Bray - ~ Description",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
geom_point(size = 3) +
geom_text_repel(label = rownames(ordination.vst.desc$vectors), size = 3)
p.b.br.vstr.pcoa 
VST - design - repeats NMDS
physeq <- ps.f
veganifyOTU <- function(physeq){
require(phyloseq)
if(taxa_are_rows(physeq)){physeq <- t(physeq)}
return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
otus <- t(otus)
deseq_counts_by_desc <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Description) ## converting counts to integer modedeseq_counts_vst_by_desc <- varianceStabilizingTransformation(deseq_counts_by_desc)
vst_trans_count_tab_descr <- assay(deseq_counts_vst_by_desc)
otu.table.desc <- otu_table(vst_trans_count_tab_descr, taxa_are_rows = TRUE)
ps.vst.desc <- physeq
otu_table(ps.vst.desc) <- otu.table.desc## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'ordination.vst.desc <- ordinate(ps.vst.desc, "NMDS", "bray")## Wisconsin double standardization
## Run 0 stress 0.1301042
## Run 1 stress 0.1345922
## Run 2 stress 0.1330047
## Run 3 stress 0.1381194
## Run 4 stress 0.1282931
## ... New best solution
## ... Procrustes: rmse 0.0257102 max resid 0.183079
## Run 5 stress 0.134153
## Run 6 stress 0.1356824
## Run 7 stress 0.1297012
## Run 8 stress 0.1441967
## Run 9 stress 0.1414356
## Run 10 stress 0.1318752
## Run 11 stress 0.1391108
## Run 12 stress 0.1373792
## Run 13 stress 0.1398737
## Run 14 stress 0.1347249
## Run 15 stress 0.132055
## Run 16 stress 0.1419963
## Run 17 stress 0.1323084
## Run 18 stress 0.1318745
## Run 19 stress 0.1402303
## Run 20 stress 0.1411863
## *** No convergence -- monoMDS stopping criteria:
## 20: stress ratio > sratmaxp.b.br.vstr.nmds <- plot_ordination(ps.vst.desc, ordination.vst.desc, type="sample", color="pH", title="NMDS - Bray - ~ Description",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
geom_point(size = 3) +
geom_text_repel(label = rownames(ordination.vst.desc$points), size = 3)
p.b.br.vstr.nmds 
VST - design - full PCoA
physeq <- ps.f
veganifyOTU <- function(physeq){
require(phyloseq)
if(taxa_are_rows(physeq)){physeq <- t(physeq)}
return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
levels(meta$Al) <- c("pos", "neg")
levels(meta$Inoculation) <- c("pos", "neg")
otus <- t(otus)
deseq_counts_by_compl <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Plant/Al + Plant/Inoculation) ## converting counts to integer modedeseq_counts_vst_by_compl <- varianceStabilizingTransformation(deseq_counts_by_compl)
vst_trans_count_tab_complr <- assay(deseq_counts_vst_by_compl)
otu.table.compl <- otu_table(vst_trans_count_tab_complr, taxa_are_rows = TRUE)
ps.vst.compl <- physeq
otu_table(ps.vst.compl) <- otu.table.compl## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'ordination.vst.compl <- ordinate(ps.vst.compl, "PCoA", "bray")
p.b.br.vstf.pcoa <- plot_ordination(ps.vst.compl, ordination.vst.compl, type="sample", color="pH", title="PCoA - Bray - VST - ~ Plant/Al + Plant/Inoculation",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
geom_point(size = 3) +
geom_text_repel(label = rownames(ordination.vst.compl$vectors), size = 3)
p.b.br.vstf.pcoa
VST - design - full NMDS
physeq <- ps.f
veganifyOTU <- function(physeq){
require(phyloseq)
if(taxa_are_rows(physeq)){physeq <- t(physeq)}
return(as(otu_table(physeq), "matrix"))
}
otus <- veganifyOTU(physeq)
meta <- as(sample_data(physeq), "data.frame")
levels(meta$Al) <- c("pos", "neg")
levels(meta$Inoculation) <- c("pos", "neg")
otus <- t(otus)
deseq_counts_by_compl <- DESeqDataSetFromMatrix(otus, colData = meta, design = ~ Plant/Al + Plant/Inoculation) ## converting counts to integer modedeseq_counts_vst_by_compl <- varianceStabilizingTransformation(deseq_counts_by_compl)
vst_trans_count_tab_complr <- assay(deseq_counts_vst_by_compl)
otu.table.compl <- otu_table(vst_trans_count_tab_complr, taxa_are_rows = TRUE)
ps.vst.compl <- physeq
otu_table(ps.vst.compl) <- otu.table.compl## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'## Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'## Also defined by 'tidytree'ordination.vst.compl <- ordinate(ps.vst.compl, "NMDS", "bray")## Wisconsin double standardization
## Run 0 stress 0.1301042
## Run 1 stress 0.1490941
## Run 2 stress 0.1306728
## Run 3 stress 0.1456589
## Run 4 stress 0.1387911
## Run 5 stress 0.1383484
## Run 6 stress 0.1461985
## Run 7 stress 0.1307298
## Run 8 stress 0.1484943
## Run 9 stress 0.138543
## Run 10 stress 0.1308612
## Run 11 stress 0.1351823
## Run 12 stress 0.145198
## Run 13 stress 0.1441977
## Run 14 stress 0.1388006
## Run 15 stress 0.1387027
## Run 16 stress 0.1400576
## Run 17 stress 0.1409418
## Run 18 stress 0.1426537
## Run 19 stress 0.132693
## Run 20 stress 0.1430562
## *** No convergence -- monoMDS stopping criteria:
## 20: stress ratio > sratmaxp.b.br.vstf.nmds <- plot_ordination(ps.vst.compl, ordination.vst.compl, type="sample", color="pH", title="NMDS - Bray - VST - ~ Plant/Al + Plant/Inoculation",
axes = c(1,2) ) + theme_bw() + theme(text = element_text(size = 10)) +
geom_point(size = 3) +
geom_text_repel(label = rownames(ordination.vst.compl$points), size = 3)
p.b.br.vstf.nmds 
all beta in one beta
ggarrange(p.b.br.wn.pcoa , p.b.br.vstr.pcoa, p.b.br.vstf.pcoa, p.b.br.wn.nmds, p.b.br.vstr.nmds, p.b.br.vstf.nmds, ncol = 3 , nrow = 2, common.legend = TRUE , font.label = list(size = 12, face = "bold", color ="black"))
reads/otus plot
plot_rich_reads_samlenames_lm <- function(ps.f){
rish <- estimate_richness(ps.f, measures = "Observed")
reads.sum <- as.data.frame(sample_sums(ps.f))
reads.summary <- cbind(rish, reads.sum)
colnames(reads.summary) <- c("otus","reads")
reads.summary["Description"] <- rownames(ps.f@sam_data)
reads.summary["Repeats"] <- ps.f@sam_data$Description
reads.summary["Plant"] <- ps.f@sam_data$Plant
library(ggrepel)
require(ggforce)
p1 <- ggplot(data=reads.summary) + geom_point(aes(y=otus, x=log2(reads), color=Repeats),size=3) + geom_text_repel(aes(y=otus, x=log2(reads), label=Description, colour = Repeats)) + theme_bw() +
geom_smooth(aes(y=otus, x=log2(reads), fill=Repeats, color=Repeats),method=lm, se=FALSE, ymin = 1) + scale_x_continuous(sec.axis = sec_axis(sec.axis ~ 2**.))
# geom_mark_ellipse(aes(y = otus, x=reads, group = Repeats, label = Repeats, color = Repeats), label.fontsize = 10, label.buffer = unit(2, "mm"), label.minwidth = unit(5, "mm"),con.cap = unit(0.1, "mm"))
return(p1)
}
plot_rich_reads_samlenames_lm(ps.f)
betadispr
Bray VST by full model normalisation
dist <- phyloseq::distance(ps.vst.compl, method = "bray", type = "samples")
groups <- ps.vst.compl@sam_data$Description
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)
TukeyHSD(mod)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## s1903_Al-s1903 -1.209882e-03 -4.223088e-03 1.803325e-03 0.9822115
## s1903_In-s1903 -1.115728e-03 -4.128934e-03 1.897479e-03 0.9916545
## s1903_In_Al-s1903 -6.753881e-04 -3.688595e-03 2.337819e-03 0.9999727
## s7307-s1903 -1.298378e-03 -4.311585e-03 1.714829e-03 0.9672230
## s7307_Al-s1903 -2.759578e-03 -5.772785e-03 2.536289e-04 0.1052013
## s7307_In-s1903 -1.677321e-03 -4.690528e-03 1.335886e-03 0.8027699
## s7307_In_Al-s1903 -2.454673e-03 -5.467880e-03 5.585336e-04 0.2299732
## s8353-s1903 -1.664416e-03 -4.677623e-03 1.348791e-03 0.8112249
## s8353_Al-s1903 -3.620337e-03 -6.633544e-03 -6.071302e-04 0.0065438
## s8353_In-s1903 -5.012079e-04 -3.514415e-03 2.511999e-03 0.9999995
## s8353_In_Al-s1903 -6.214141e-03 -9.904551e-03 -2.523731e-03 0.0000235
## s8473-s1903 -6.321445e-04 -3.645351e-03 2.381062e-03 0.9999883
## s8473_Al-s1903 -1.055240e-03 -4.068447e-03 1.957967e-03 0.9951981
## s8473_In-s1903 -3.308878e-03 -6.563513e-03 -5.424269e-05 0.0427855
## s8473_In_Al-s1903 -1.631902e-03 -4.645109e-03 1.381305e-03 0.8317173
## s1903_In-s1903_Al 9.415419e-05 -2.919053e-03 3.107361e-03 1.0000000
## s1903_In_Al-s1903_Al 5.344936e-04 -2.478713e-03 3.547700e-03 0.9999987
## s7307-s1903_Al -8.849638e-05 -3.101703e-03 2.924710e-03 1.0000000
## s7307_Al-s1903_Al -1.549696e-03 -4.562903e-03 1.463511e-03 0.8779697
## s7307_In-s1903_Al -4.674395e-04 -3.480646e-03 2.545767e-03 0.9999998
## s7307_In_Al-s1903_Al -1.244791e-03 -4.257998e-03 1.768415e-03 0.9771162
## s8353-s1903_Al -4.545341e-04 -3.467741e-03 2.558673e-03 0.9999999
## s8353_Al-s1903_Al -2.410455e-03 -5.423662e-03 6.027515e-04 0.2545735
## s8353_In-s1903_Al 7.086738e-04 -2.304533e-03 3.721881e-03 0.9999497
## s8353_In_Al-s1903_Al -5.004259e-03 -8.694669e-03 -1.313850e-03 0.0011658
## s8473-s1903_Al 5.777372e-04 -2.435470e-03 3.590944e-03 0.9999964
## s8473_Al-s1903_Al 1.546417e-04 -2.858565e-03 3.167848e-03 1.0000000
## s8473_In-s1903_Al -2.098996e-03 -5.353632e-03 1.155639e-03 0.5995973
## s8473_In_Al-s1903_Al -4.220204e-04 -3.435227e-03 2.591186e-03 1.0000000
## s1903_In_Al-s1903_In 4.403394e-04 -2.572867e-03 3.453546e-03 0.9999999
## s7307-s1903_In -1.826506e-04 -3.195857e-03 2.830556e-03 1.0000000
## s7307_Al-s1903_In -1.643850e-03 -4.657057e-03 1.369356e-03 0.8243244
## s7307_In-s1903_In -5.615937e-04 -3.574800e-03 2.451613e-03 0.9999976
## s7307_In_Al-s1903_In -1.338946e-03 -4.352152e-03 1.674261e-03 0.9578514
## s8353-s1903_In -5.486883e-04 -3.561895e-03 2.464519e-03 0.9999982
## s8353_Al-s1903_In -2.504609e-03 -5.517816e-03 5.085974e-04 0.2042579
## s8353_In-s1903_In 6.145196e-04 -2.398687e-03 3.627726e-03 0.9999919
## s8353_In_Al-s1903_In -5.098414e-03 -8.788823e-03 -1.408004e-03 0.0008686
## s8473-s1903_In 4.835831e-04 -2.529624e-03 3.496790e-03 0.9999997
## s8473_Al-s1903_In 6.048752e-05 -2.952719e-03 3.073694e-03 1.0000000
## s8473_In-s1903_In -2.193150e-03 -5.447786e-03 1.061485e-03 0.5277923
## s8473_In_Al-s1903_In -5.161746e-04 -3.529381e-03 2.497032e-03 0.9999992
## s7307-s1903_In_Al -6.229900e-04 -3.636197e-03 2.390217e-03 0.9999904
## s7307_Al-s1903_In_Al -2.084190e-03 -5.097397e-03 9.290170e-04 0.4841391
## s7307_In-s1903_In_Al -1.001933e-03 -4.015140e-03 2.011274e-03 0.9971899
## s7307_In_Al-s1903_In_Al -1.779285e-03 -4.792492e-03 1.233922e-03 0.7303249
## s8353-s1903_In_Al -9.890277e-04 -4.002234e-03 2.024179e-03 0.9975500
## s8353_Al-s1903_In_Al -2.944949e-03 -5.958156e-03 6.825793e-05 0.0615298
## s8353_In-s1903_In_Al 1.741802e-04 -2.839027e-03 3.187387e-03 1.0000000
## s8353_In_Al-s1903_In_Al -5.538753e-03 -9.229163e-03 -1.848343e-03 0.0002136
## s8473-s1903_In_Al 4.324363e-05 -2.969963e-03 3.056450e-03 1.0000000
## s8473_Al-s1903_In_Al -3.798519e-04 -3.393059e-03 2.633355e-03 1.0000000
## s8473_In-s1903_In_Al -2.633490e-03 -5.888125e-03 6.211454e-04 0.2389711
## s8473_In_Al-s1903_In_Al -9.565140e-04 -3.969721e-03 2.056693e-03 0.9982892
## s7307_Al-s7307 -1.461200e-03 -4.474407e-03 1.552007e-03 0.9182637
## s7307_In-s7307 -3.789431e-04 -3.392150e-03 2.634264e-03 1.0000000
## s7307_In_Al-s7307 -1.156295e-03 -4.169502e-03 1.856912e-03 0.9882673
## s8353-s7307 -3.660377e-04 -3.379244e-03 2.647169e-03 1.0000000
## s8353_Al-s7307 -2.321959e-03 -5.335166e-03 6.912479e-04 0.3089165
## s8353_In-s7307 7.971702e-04 -2.216037e-03 3.810377e-03 0.9997872
## s8353_In_Al-s7307 -4.915763e-03 -8.606173e-03 -1.225353e-03 0.0015341
## s8473-s7307 6.662336e-04 -2.346973e-03 3.679440e-03 0.9999770
## s8473_Al-s7307 2.431381e-04 -2.770069e-03 3.256345e-03 1.0000000
## s8473_In-s7307 -2.010500e-03 -5.265135e-03 1.244135e-03 0.6663385
## s8473_In_Al-s7307 -3.335240e-04 -3.346731e-03 2.679683e-03 1.0000000
## s7307_In-s7307_Al 1.082257e-03 -1.930950e-03 4.095464e-03 0.9938109
## s7307_In_Al-s7307_Al 3.049047e-04 -2.708302e-03 3.318111e-03 1.0000000
## s8353-s7307_Al 1.095162e-03 -1.918045e-03 4.108369e-03 0.9930410
## s8353_Al-s7307_Al -8.607590e-04 -3.873966e-03 2.152448e-03 0.9994754
## s8353_In-s7307_Al 2.258370e-03 -7.548368e-04 5.271577e-03 0.3519862
## s8353_In_Al-s7307_Al -3.454563e-03 -7.144973e-03 2.358464e-04 0.0885720
## s8473-s7307_Al 2.127433e-03 -8.857733e-04 5.140640e-03 0.4497538
## s8473_Al-s7307_Al 1.704338e-03 -1.308869e-03 4.717545e-03 0.7845112
## s8473_In-s7307_Al -5.493001e-04 -3.803935e-03 2.705335e-03 0.9999994
## s8473_In_Al-s7307_Al 1.127676e-03 -1.885531e-03 4.140883e-03 0.9907516
## s7307_In_Al-s7307_In -7.773520e-04 -3.790559e-03 2.235855e-03 0.9998428
## s8353-s7307_In 1.290539e-05 -3.000301e-03 3.026112e-03 1.0000000
## s8353_Al-s7307_In -1.943016e-03 -4.956223e-03 1.070191e-03 0.5998256
## s8353_In-s7307_In 1.176113e-03 -1.837094e-03 4.189320e-03 0.9862557
## s8353_In_Al-s7307_In -4.536820e-03 -8.227229e-03 -8.464103e-04 0.0048352
## s8473-s7307_In 1.045177e-03 -1.968030e-03 4.058383e-03 0.9956442
## s8473_Al-s7307_In 6.220812e-04 -2.391126e-03 3.635288e-03 0.9999905
## s8473_In-s7307_In -1.631557e-03 -4.886192e-03 1.623078e-03 0.8970403
## s8473_In_Al-s7307_In 4.541905e-05 -2.967788e-03 3.058626e-03 1.0000000
## s8353-s7307_In_Al 7.902574e-04 -2.222949e-03 3.803464e-03 0.9998083
## s8353_Al-s7307_In_Al -1.165664e-03 -4.178871e-03 1.847543e-03 0.9873478
## s8353_In-s7307_In_Al 1.953465e-03 -1.059742e-03 4.966672e-03 0.5912153
## s8353_In_Al-s7307_In_Al -3.759468e-03 -7.449877e-03 -6.905830e-05 0.0419670
## s8473-s7307_In_Al 1.822529e-03 -1.190678e-03 4.835736e-03 0.6970992
## s8473_Al-s7307_In_Al 1.399433e-03 -1.613774e-03 4.412640e-03 0.9405055
## s8473_In-s7307_In_Al -8.542048e-04 -4.108840e-03 2.400431e-03 0.9998066
## s8473_In_Al-s7307_In_Al 8.227711e-04 -2.190436e-03 3.835978e-03 0.9996902
## s8353_Al-s8353 -1.955921e-03 -4.969128e-03 1.057286e-03 0.5891904
## s8353_In-s8353 1.163208e-03 -1.849999e-03 4.176415e-03 0.9875942
## s8353_In_Al-s8353 -4.549725e-03 -8.240135e-03 -8.593157e-04 0.0046537
## s8473-s8353 1.032271e-03 -1.980935e-03 4.045478e-03 0.9961655
## s8473_Al-s8353 6.091758e-04 -2.404031e-03 3.622383e-03 0.9999928
## s8473_In-s8353 -1.644462e-03 -4.899098e-03 1.610173e-03 0.8914306
## s8473_In_Al-s8353 3.251367e-05 -2.980693e-03 3.045720e-03 1.0000000
## s8353_In-s8353_Al 3.119129e-03 1.059222e-04 6.132336e-03 0.0358867
## s8353_In_Al-s8353_Al -2.593804e-03 -6.284214e-03 1.096605e-03 0.4573168
## s8473-s8353_Al 2.988192e-03 -2.501429e-05 6.001399e-03 0.0539820
## s8473_Al-s8353_Al 2.565097e-03 -4.481098e-04 5.578304e-03 0.1760074
## s8473_In-s8353_Al 3.114590e-04 -2.943176e-03 3.566094e-03 1.0000000
## s8473_In_Al-s8353_Al 1.988435e-03 -1.024772e-03 5.001642e-03 0.5623656
## s8353_In_Al-s8353_In -5.712933e-03 -9.403343e-03 -2.022524e-03 0.0001215
## s8473-s8353_In -1.309365e-04 -3.144143e-03 2.882270e-03 1.0000000
## s8473_Al-s8353_In -5.540321e-04 -3.567239e-03 2.459175e-03 0.9999980
## s8473_In-s8353_In -2.807670e-03 -6.062305e-03 4.469652e-04 0.1613632
## s8473_In_Al-s8353_In -1.130694e-03 -4.143901e-03 1.882513e-03 0.9905115
## s8473-s8353_In_Al 5.581997e-03 1.891587e-03 9.272406e-03 0.0001858
## s8473_Al-s8353_In_Al 5.158901e-03 1.468491e-03 8.849311e-03 0.0007181
## s8473_In-s8353_In_Al 2.905263e-03 -9.847702e-04 6.795296e-03 0.3576014
## s8473_In_Al-s8353_In_Al 4.582239e-03 8.918294e-04 8.272648e-03 0.0042247
## s8473_Al-s8473 -4.230955e-04 -3.436302e-03 2.590111e-03 1.0000000
## s8473_In-s8473 -2.676734e-03 -5.931369e-03 5.779018e-04 0.2175990
## s8473_In_Al-s8473 -9.997577e-04 -4.012964e-03 2.013449e-03 0.9972536
## s8473_In-s8473_Al -2.253638e-03 -5.508273e-03 1.000997e-03 0.4823120
## s8473_In_Al-s8473_Al -5.766621e-04 -3.589869e-03 2.436545e-03 0.9999965
## s8473_In_Al-s8473_In 1.676976e-03 -1.577659e-03 4.931611e-03 0.8764894Unifrac Rarifaed
ps.rar <- rarefy_even_depth(ps.f, rngseed = 7788, verbose = FALSE)
dist <- phyloseq::distance(ps.rar, method = "unifrac", type = "samples")
groups <- ps.rar@sam_data$Description
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)
TukeyHSD(mod)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## s1903_Al-s1903 5.233605e-03 -0.033524178 4.399139e-02 1.0000000
## s1903_In-s1903 -7.222439e-03 -0.045980221 3.153534e-02 0.9999976
## s1903_In_Al-s1903 -1.518960e-02 -0.053947386 2.356818e-02 0.9857302
## s7307-s1903 -3.603076e-02 -0.074788538 2.727027e-03 0.0936080
## s7307_Al-s1903 -3.586284e-02 -0.074620626 2.894939e-03 0.0971230
## s7307_In-s1903 -3.594718e-02 -0.074704967 2.810599e-03 0.0953438
## s7307_In_Al-s1903 -2.708901e-02 -0.065846788 1.166878e-02 0.4666776
## s8353-s1903 -2.181330e-02 -0.060571083 1.694448e-02 0.7903163
## s8353_Al-s1903 -3.874739e-02 -0.077505177 1.038818e-05 0.0501244
## s8353_In-s1903 -2.840887e-02 -0.067166654 1.034891e-02 0.3878114
## s8353_In_Al-s1903 -8.935668e-02 -0.136825077 -4.188829e-02 0.0000021
## s8473-s1903 -3.562596e-02 -0.074383739 3.131827e-03 0.1022698
## s8473_Al-s1903 -2.660726e-02 -0.065365041 1.215052e-02 0.4967416
## s8473_In-s1903 -6.242391e-02 -0.104287102 -2.056072e-02 0.0002398
## s8473_In_Al-s1903 -3.334672e-02 -0.072104503 5.411062e-03 0.1642187
## s1903_In-s1903_Al -1.245604e-02 -0.051213826 2.630174e-02 0.9980449
## s1903_In_Al-s1903_Al -2.042321e-02 -0.059180990 1.833457e-02 0.8575605
## s7307-s1903_Al -4.126436e-02 -0.080022143 -2.506578e-03 0.0269346
## s7307_Al-s1903_Al -4.109645e-02 -0.079854231 -2.338666e-03 0.0281060
## s7307_In-s1903_Al -4.118079e-02 -0.079938571 -2.423006e-03 0.0275119
## s7307_In_Al-s1903_Al -3.232261e-02 -0.071080393 6.435173e-03 0.2001961
## s8353-s1903_Al -2.704691e-02 -0.065804688 1.171088e-02 0.4692829
## s8353_Al-s1903_Al -4.398100e-02 -0.082738782 -5.223216e-03 0.0132570
## s8353_In-s1903_Al -3.364248e-02 -0.072400259 5.115307e-03 0.1548148
## s8353_In_Al-s1903_Al -9.459029e-02 -0.142058682 -4.712189e-02 0.0000005
## s8473-s1903_Al -4.085956e-02 -0.079617343 -2.101778e-03 0.0298378
## s8473_Al-s1903_Al -3.184086e-02 -0.070598646 6.916920e-03 0.2190063
## s8473_In-s1903_Al -6.765752e-02 -0.109520707 -2.579433e-02 0.0000534
## s8473_In_Al-s1903_Al -3.858033e-02 -0.077338108 1.774572e-04 0.0521628
## s1903_In_Al-s1903_In -7.967165e-03 -0.046724947 3.079062e-02 0.9999911
## s7307-s1903_In -2.880832e-02 -0.067566100 9.949465e-03 0.3652332
## s7307_Al-s1903_In -2.864041e-02 -0.067398188 1.011738e-02 0.3746417
## s7307_In-s1903_In -2.872475e-02 -0.067482528 1.003304e-02 0.3699007
## s7307_In_Al-s1903_In -1.986657e-02 -0.058624349 1.889122e-02 0.8806033
## s8353-s1903_In -1.459086e-02 -0.053348645 2.416692e-02 0.9902131
## s8353_Al-s1903_In -3.152496e-02 -0.070282738 7.232827e-03 0.2320086
## s8353_In-s1903_In -2.118643e-02 -0.059944215 1.757135e-02 0.8222669
## s8353_In_Al-s1903_In -8.213424e-02 -0.129602638 -3.466585e-02 0.0000133
## s8473-s1903_In -2.840352e-02 -0.067161300 1.035427e-02 0.3881185
## s8473_Al-s1903_In -1.938482e-02 -0.058142602 1.937296e-02 0.8986323
## s8473_In-s1903_In -5.520147e-02 -0.097064664 -1.333828e-02 0.0017872
## s8473_In_Al-s1903_In -2.612428e-02 -0.064882065 1.263350e-02 0.5273350
## s7307-s1903_In_Al -2.084115e-02 -0.059598935 1.791663e-02 0.8387468
## s7307_Al-s1903_In_Al -2.067324e-02 -0.059431023 1.808454e-02 0.8464576
## s7307_In-s1903_In_Al -2.075758e-02 -0.059515363 1.800020e-02 0.8426098
## s7307_In_Al-s1903_In_Al -1.189940e-02 -0.050657185 2.685838e-02 0.9988139
## s8353-s1903_In_Al -6.623697e-03 -0.045381480 3.213409e-02 0.9999992
## s8353_Al-s1903_In_Al -2.355779e-02 -0.062315574 1.519999e-02 0.6900694
## s8353_In-s1903_In_Al -1.321927e-02 -0.051977051 2.553851e-02 0.9963363
## s8353_In_Al-s1903_In_Al -7.416708e-02 -0.121635474 -2.669868e-02 0.0001022
## s8473-s1903_In_Al -2.043635e-02 -0.059194135 1.832143e-02 0.8569882
## s8473_Al-s1903_In_Al -1.141766e-02 -0.050175438 2.734013e-02 0.9992539
## s8473_In-s1903_In_Al -4.723431e-02 -0.089097499 -5.371119e-03 0.0141737
## s8473_In_Al-s1903_In_Al -1.815712e-02 -0.056914900 2.060066e-02 0.9364910
## s7307_Al-s7307 1.679122e-04 -0.038589870 3.892569e-02 1.0000000
## s7307_In-s7307 8.357188e-05 -0.038674211 3.884135e-02 1.0000000
## s7307_In_Al-s7307 8.941751e-03 -0.029816032 4.769953e-02 0.9999606
## s8353-s7307 1.421746e-02 -0.024540327 5.297524e-02 0.9923810
## s8353_Al-s7307 -2.716638e-03 -0.041474421 3.604114e-02 1.0000000
## s8353_In-s7307 7.621884e-03 -0.031135898 4.637967e-02 0.9999950
## s8353_In_Al-s7307 -5.332593e-02 -0.100794321 -5.857530e-03 0.0149084
## s8473-s7307 4.048000e-04 -0.038352983 3.916258e-02 1.0000000
## s8473_Al-s7307 9.423497e-03 -0.029334285 4.818128e-02 0.9999239
## s8473_In-s7307 -2.639316e-02 -0.068256346 1.547003e-02 0.6353255
## s8473_In_Al-s7307 2.684035e-03 -0.036073748 4.144182e-02 1.0000000
## s7307_In-s7307_Al -8.434035e-05 -0.038842123 3.867344e-02 1.0000000
## s7307_In_Al-s7307_Al 8.773838e-03 -0.029983944 4.753162e-02 0.9999690
## s8353-s7307_Al 1.404954e-02 -0.024708239 5.280733e-02 0.9932196
## s8353_Al-s7307_Al -2.884551e-03 -0.041642333 3.587323e-02 1.0000000
## s8353_In-s7307_Al 7.453972e-03 -0.031303810 4.621175e-02 0.9999963
## s8353_In_Al-s7307_Al -5.349384e-02 -0.100962233 -6.025442e-03 0.0143749
## s8473-s7307_Al 2.368877e-04 -0.038520895 3.899467e-02 1.0000000
## s8473_Al-s7307_Al 9.255585e-03 -0.029502197 4.801337e-02 0.9999392
## s8473_In-s7307_Al -2.656107e-02 -0.068424259 1.530212e-02 0.6254568
## s8473_In_Al-s7307_Al 2.516123e-03 -0.036241660 4.127391e-02 1.0000000
## s7307_In_Al-s7307_In 8.858179e-03 -0.029899604 4.761596e-02 0.9999650
## s8353-s7307_In 1.413388e-02 -0.024623899 5.289167e-02 0.9928084
## s8353_Al-s7307_In -2.800210e-03 -0.041557993 3.595757e-02 1.0000000
## s8353_In-s7307_In 7.538313e-03 -0.031219470 4.629610e-02 0.9999957
## s8353_In_Al-s7307_In -5.340950e-02 -0.100877893 -5.941102e-03 0.0146406
## s8473-s7307_In 3.212281e-04 -0.038436555 3.907901e-02 1.0000000
## s8473_Al-s7307_In 9.339926e-03 -0.029417857 4.809771e-02 0.9999319
## s8473_In-s7307_In -2.647673e-02 -0.068339918 1.538646e-02 0.6304184
## s8473_In_Al-s7307_In 2.600463e-03 -0.036157319 4.135825e-02 1.0000000
## s8353-s7307_In_Al 5.275705e-03 -0.033482078 4.403349e-02 1.0000000
## s8353_Al-s7307_In_Al -1.165839e-02 -0.050416172 2.709939e-02 0.9990559
## s8353_In-s7307_In_Al -1.319866e-03 -0.040077649 3.743792e-02 1.0000000
## s8353_In_Al-s7307_In_Al -6.226768e-02 -0.109736072 -1.479928e-02 0.0019313
## s8473-s7307_In_Al -8.536951e-03 -0.047294733 3.022083e-02 0.9999781
## s8473_Al-s7307_In_Al 4.817469e-04 -0.038276036 3.923953e-02 1.0000000
## s8473_In-s7307_In_Al -3.533491e-02 -0.077198097 6.528283e-03 0.1858185
## s8473_In_Al-s7307_In_Al -6.257715e-03 -0.045015498 3.250007e-02 0.9999997
## s8353_Al-s8353 -1.693409e-02 -0.055691876 2.182369e-02 0.9632412
## s8353_In-s8353 -6.595571e-03 -0.045353353 3.216221e-02 0.9999993
## s8353_In_Al-s8353 -6.754338e-02 -0.115011776 -2.007499e-02 0.0005364
## s8473-s8353 -1.381266e-02 -0.052570438 2.494513e-02 0.9942733
## s8473_Al-s8353 -4.793958e-03 -0.043551740 3.396382e-02 1.0000000
## s8473_In-s8353 -4.061061e-02 -0.082473802 1.252578e-03 0.0656938
## s8473_In_Al-s8353 -1.153342e-02 -0.050291203 2.722436e-02 0.9991637
## s8353_In-s8353_Al 1.033852e-02 -0.028419260 4.909631e-02 0.9997652
## s8353_In_Al-s8353_Al -5.060929e-02 -0.098077683 -3.140892e-03 0.0265408
## s8473-s8353_Al 3.121438e-03 -0.035636344 4.187922e-02 1.0000000
## s8473_Al-s8353_Al 1.214014e-02 -0.026617647 5.089792e-02 0.9985210
## s8473_In-s8353_Al -2.367652e-02 -0.065539708 1.818667e-02 0.7846228
## s8473_In_Al-s8353_Al 5.400674e-03 -0.033357109 4.415846e-02 1.0000000
## s8353_In_Al-s8353_In -6.094781e-02 -0.108416206 -1.347941e-02 0.0026414
## s8473-s8353_In -7.217085e-03 -0.045974867 3.154070e-02 0.9999976
## s8473_Al-s8353_In 1.801613e-03 -0.036956170 4.055940e-02 1.0000000
## s8473_In-s8353_In -3.401504e-02 -0.075878231 7.848149e-03 0.2334036
## s8473_In_Al-s8353_In -4.937849e-03 -0.043695632 3.381993e-02 1.0000000
## s8473-s8353_In_Al 5.373073e-02 0.006262330 1.011991e-01 0.0136526
## s8473_Al-s8353_In_Al 6.274942e-02 0.015281028 1.102178e-01 0.0017213
## s8473_In-s8353_In_Al 2.693277e-02 -0.023103313 7.696885e-02 0.8377738
## s8473_In_Al-s8353_In_Al 5.600996e-02 0.008541565 1.034784e-01 0.0082442
## s8473_Al-s8473 9.018697e-03 -0.029739085 4.777648e-02 0.9999561
## s8473_In-s8473 -2.679796e-02 -0.068661146 1.506523e-02 0.6114779
## s8473_In_Al-s8473 2.279235e-03 -0.036478547 4.103702e-02 1.0000000
## s8473_In-s8473_Al -3.581665e-02 -0.077679844 6.046536e-03 0.1703870
## s8473_In_Al-s8473_Al -6.739462e-03 -0.045497245 3.201832e-02 0.9999990
## s8473_In_Al-s8473_In 2.907719e-02 -0.012785998 7.094038e-02 0.4771477Al Bray VST by full model normalisation
dist <- phyloseq::distance(ps.vst.compl, method = "bray", type = "samples")
groups <- ps.vst.compl@sam_data$Al
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)
TukeyHSD(mod)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## +-- -0.001236667 -0.002258316 -0.000215019 0.0185207Al Unifrac Rarifaed
ps.rar <- rarefy_even_depth(ps.f, rngseed = 7788, verbose = FALSE)
dist <- phyloseq::distance(ps.rar, method = "unifrac", type = "samples")
groups <- ps.rar@sam_data$Al
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)
TukeyHSD(mod)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## +-- -0.001678026 -0.01496145 0.0116054 0.8013204In Bray VST by full model normalisation
dist <- phyloseq::distance(ps.vst.compl, method = "bray", type = "samples")
groups <- ps.vst.compl@sam_data$Inoculation
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)
TukeyHSD(mod)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## +-- -0.0002494295 -0.001222192 0.0007233325 0.6098094In Unifrac Rarifaed
ps.rar <- rarefy_even_depth(ps.f, rngseed = 7788, verbose = FALSE)
dist <- phyloseq::distance(ps.rar, method = "unifrac", type = "samples")
groups <- ps.rar@sam_data$Inoculation
mod <- vegan::betadisper(dist, groups)
mod.box <- boxplot(mod)
TukeyHSD(mod)## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## +-- -0.00902475 -0.02109477 0.00304527 0.1399467colnames(vst_trans_count_tab) <- meta$Medium_or_Soil
d.vst <- as.data.frame(vst_trans_count_tab)
t.d.vst <- t(d.vst)
vst.median <- aggregate(t.d.vst, by=list(meta$Medium_or_Soil), median)
vst.median <- as.data.frame(vst.median)
vst.median$Group.1 <- as.character(vst.median$Group.1)
vst.median <- column_to_rownames(vst.median, "Group.1")
vst.median <- t(vst.median)
vst.median <- as.data.frame(vst.median)
vst.median
p.differ <- ggplot(data=vst.median) + geom_point(aes(x = soil, y = medium)) + theme_bw()
p.differ
gbs.core.merged <- vst.median[rownames(gbs.core),]
gbs.core.merged
metadata <- as.data.frame(ps.f@sam_data)
levels(metadata$Al) <- c("pos", "neg")
levels(metadata$Inoculation) <- c("pos", "neg")
metadata
plot(BineM ~ Description, data=metadata)
require(igraph)require(igraph)
require(tibble)
require(RColorBrewer)
some_ps <- ps.f
cor.otus <- cor(ps.f@otu_table@.Data, method = "spearman")
tax <- as.data.frame(ps.f@tax_table@.Data)
lev <- levels(tax$Family)
len_lev <- length(lev)
pal <- brewer.pal(len_lev,"Accent")
vertex.col <- pal[tax$Family]
cor.otu <- cor(ps.f@otu_table@.Data, method = "spearman")
cor.otu[cor.otu < .75 ] <- 0
diag(cor.otu) <- 0
new_g <- graph.adjacency(cor.otu, mode='undirected', weighted = 'correlation')
cohesion(new_g)
new_g
cohesion.igraph()library(heatmaply)## Loading required package: plotly##
## Attaching package: 'plotly'## The following object is masked from 'package:IRanges':
##
## slice## The following object is masked from 'package:S4Vectors':
##
## rename## The following object is masked from 'package:ggplot2':
##
## last_plot## The following object is masked from 'package:stats':
##
## filter## The following object is masked from 'package:graphics':
##
## layout## Loading required package: viridis## Loading required package: viridisLite## Registered S3 method overwritten by 'dendextend':
## method from
## rev.hclust vegan## Registered S3 method overwritten by 'gclus':
## method from
## reorder.hclust vegan## Registered S3 method overwritten by 'seriation':
## method from
## reorder.hclust gclus##
## ======================
## Welcome to heatmaply version 1.1.0
##
## Type citation('heatmaply') for how to cite the package.
## Type ?heatmaply for the main documentation.
##
## The github page is: https://github.com/talgalili/heatmaply/
## Please submit your suggestions and bug-reports at: https://github.com/talgalili/heatmaply/issues
## Or contact: <tal.galili@gmail.com>
## ======================##
## Attaching package: 'heatmaply'## The following object is masked from 'package:BiocGenerics':
##
## normalizemeta <- function(x) {
df <- as(sample_data(x), "data.frame")
rownames(df) <- sample_names(x)
df
}
metadata <- meta(ps.f)
metadata.num <- metadata %>%
dplyr::select_if(is.numeric) %>%
select(-c("QRTPCR", "SeedCa"))
heatmaply(scale(metadata.num))clust <- hclust(dist(t(metadata.num)))
plot(clust)
# knitr::purl("Al.Rmd")heatmaply_cor(
cor(scale(metadata.num)),
k_col = 2,
k_row = 2
)r <- cor(scale(metadata.num))
## We use this function to calculate a matrix of p-values from correlation tests
## https://stackoverflow.com/a/13112337/4747043
cor.test.p <- function(x){
FUN <- function(x, y) cor.test(x, y)[["p.value"]]
z <- outer(
colnames(x),
colnames(x),
Vectorize(function(i,j) FUN(x[,i], x[,j]))
)
dimnames(z) <- list(colnames(x), colnames(x))
z
}
p <- cor.test.p(scale(metadata.num))
p <- as.data.frame(p)
p## BineM SeedM BineSeedM SeedN
## BineM 0.000000e+00 7.489718e-14 6.694229e-27 7.413713e-13
## SeedM 7.489718e-14 0.000000e+00 4.026701e-34 1.054934e-06
## BineSeedM 6.694229e-27 4.026701e-34 0.000000e+00 4.659827e-10
## SeedN 7.413713e-13 1.054934e-06 4.659827e-10 0.000000e+00
## SeedMOne 1.148927e-02 3.835627e-12 3.667342e-07 7.454551e-01
## NodPerPlant 8.113421e-01 1.364780e-01 4.340295e-01 3.043066e-01
## NodPerPlant.1 2.294759e-03 4.532977e-02 9.541708e-03 2.961543e-01
## Mic 1.455431e-02 3.306299e-01 9.145987e-02 1.721279e-03
## Ves 1.151929e-01 3.310524e-02 4.525624e-02 3.899656e-01
## Arb 2.605397e-04 1.934130e-02 2.162542e-03 4.346141e-05
## pH 4.973855e-01 1.248652e-01 2.181272e-01 6.533320e-02
## NitBine 9.248097e-13 2.593620e-05 1.045008e-08 2.734681e-10
## Nit15 2.627838e-07 2.860928e-09 1.678371e-09 1.319500e-03
## NitPerPlant 4.159787e-09 1.734642e-05 1.177882e-07 1.540250e-04
## Nit15PerPlant 8.647113e-01 2.251138e-01 4.201862e-01 7.939532e-01
## NitSeed 1.076526e-01 4.371717e-01 7.973062e-01 8.895170e-03
## NitSeed15 1.053072e-07 2.517244e-14 1.287651e-12 2.657828e-04
## NitSeedPerPlant 1.301900e-09 2.644472e-38 1.918494e-22 1.271378e-04
## Nit15SeedPerPlant 2.171347e-03 3.582088e-07 8.667505e-06 2.701152e-02
## NitBineSeedPerPlant 9.592183e-11 4.024084e-37 4.950142e-24 5.289828e-05
## Nit15BineSeedPerPlant 1.289857e-02 3.334681e-04 9.754174e-04 4.990483e-02
## BineAl 3.271017e-12 3.913589e-06 2.561218e-09 8.766065e-11
## BineB 1.186995e-10 1.082446e-03 1.605944e-06 9.770748e-09
## BineCa 6.585652e-04 9.030738e-01 1.175478e-01 4.492061e-04
## BineCo 3.623929e-10 3.114072e-05 8.087920e-08 4.197235e-09
## BineCu 4.091990e-14 5.314457e-08 1.079105e-11 6.236152e-08
## BineFe 9.221922e-08 6.024761e-09 1.458851e-09 6.267748e-04
## BineK 2.326359e-08 3.147091e-10 9.746133e-11 7.027482e-05
## BineMg 4.518537e-14 1.973531e-09 5.629125e-13 1.772338e-12
## BineMn 1.175390e-02 2.759137e-02 1.314599e-02 9.827159e-05
## BineMo 2.020687e-02 5.431431e-01 1.584792e-01 4.315838e-01
## BineNi 2.401936e-10 7.252496e-04 1.314402e-06 4.587339e-09
## BineP 6.014190e-17 6.516313e-11 1.674190e-15 2.763240e-10
## BineS 3.344074e-11 5.503420e-04 5.801529e-07 3.049420e-06
## BineZn 2.469025e-07 6.414849e-09 2.679559e-09 2.672649e-06
## SeedAl 7.557251e-04 3.538670e-07 4.095890e-06 6.296745e-04
## SeedB 1.823334e-01 5.237074e-01 3.223223e-01 5.994818e-01
## SeedCo 3.845294e-01 4.766561e-01 9.731401e-01 1.076529e-01
## SeedCu 3.604773e-08 4.015702e-04 3.651736e-06 2.475381e-05
## SeedFe 1.360472e-01 9.153281e-01 4.608725e-01 2.016334e-01
## SeedK 9.574089e-01 3.682458e-01 6.054327e-01 2.441536e-01
## SeedMg 2.005184e-01 3.185522e-01 9.838024e-01 2.777923e-03
## SeedMn 1.599300e-01 7.724757e-01 6.454524e-01 1.704528e-02
## SeedMo 7.074834e-02 5.913396e-01 2.542721e-01 1.500116e-01
## SeedNi 1.285328e-01 4.040683e-01 2.328431e-01 6.410339e-03
## SeedP 3.408959e-09 2.004082e-03 7.499343e-06 1.362153e-07
## SeedS 8.787509e-01 8.492019e-03 1.376650e-01 7.156944e-02
## SeedZn 3.008533e-01 7.459879e-01 5.061749e-01 7.151021e-02
## SoilAl 1.435347e-01 1.197649e-01 1.085712e-01 1.353056e-02
## SoilB 6.705433e-01 3.093172e-01 6.767656e-01 3.945656e-01
## SoilCa 2.963318e-02 8.377317e-01 3.959852e-01 6.723663e-03
## SoilCo 2.300933e-01 3.477471e-01 9.831273e-01 3.812530e-01
## SoilCu 1.410986e-03 1.688090e-01 2.369009e-02 4.311786e-03
## SoilFe 6.811221e-01 3.627767e-02 1.504967e-01 2.005809e-01
## SoilK 2.855802e-05 4.027763e-10 1.260529e-08 2.860483e-02
## SoilMg 1.961378e-05 2.799423e-10 7.956769e-09 2.387634e-02
## SoilMn 1.660407e-01 7.538478e-01 6.625963e-01 8.118906e-01
## SoilMo 2.247808e-02 2.521754e-01 8.486080e-02 1.279713e-03
## SoilNi 2.567026e-01 5.083392e-01 9.082374e-01 5.553840e-01
## SoilP 6.696890e-01 2.638312e-01 6.338503e-01 1.786865e-01
## SoilS 1.321809e-01 6.314801e-01 3.316208e-01 1.222232e-01
## SoilZn 2.564993e-04 6.560220e-02 5.914686e-03 1.431195e-02
## BinePerPlantAl 1.494682e-19 3.474709e-08 1.568495e-13 1.412155e-07
## BinePerPlantB 3.709157e-03 7.028634e-03 3.117206e-03 8.380075e-02
## BinePerPLantCa 3.011352e-11 1.032774e-13 7.822823e-15 3.871792e-05
## BinePerPlantCo 8.980286e-19 1.290804e-08 8.720929e-14 1.406053e-06
## BinePerPlantCu 1.173801e-13 8.098674e-07 1.982998e-10 2.795032e-08
## BinePerPlantFe 2.653164e-08 2.573478e-02 1.685925e-04 4.046656e-07
## BinePerPlantK 1.044413e-35 2.001993e-09 7.995037e-18 1.269280e-12
## BinePerPlantMg 1.459958e-05 6.042526e-02 2.243337e-03 3.563403e-02
## BinePerPlantMn 8.080681e-04 1.043098e-01 1.293571e-02 4.832108e-01
## BinePerPlantMo 3.718677e-01 1.497829e-01 2.027241e-01 1.237158e-02
## BinePerPlantNi 3.768417e-26 4.678623e-12 8.929399e-20 8.261275e-09
## BinePerPlantP 2.037334e-05 4.161894e-02 1.750313e-03 2.167122e-03
## BinePerPlantSe 3.222530e-12 7.732814e-09 1.088847e-11 4.630485e-09
## BinePerPLantZn 4.430851e-03 8.516158e-01 1.692758e-01 1.958656e-01
## SeedPerPlantAl 1.232852e-12 6.229793e-23 1.471661e-21 8.455587e-06
## SeedPerPlantB 1.103012e-11 2.749380e-17 1.904395e-17 7.702688e-05
## SeedPerPlantCa 3.328553e-04 2.532590e-14 1.657473e-09 2.098842e-01
## SeedPerPlantCo 4.799386e-05 1.246118e-13 4.852072e-10 1.044915e-01
## SeedPerPlantCu 2.898171e-04 5.336645e-15 8.302264e-10 1.105541e-02
## SeedPerPlantFe 1.805725e-05 3.277178e-14 1.153970e-10 5.642754e-03
## SeedPerPlantK 2.359996e-09 1.496497e-23 2.905169e-18 7.859006e-04
## SeedPerPlantMg 2.896234e-07 1.794763e-23 7.752769e-16 1.156269e-02
## SeedPerPlantMn 1.709076e-05 3.292993e-14 1.100205e-10 4.981403e-02
## SeedPerPlantMo 3.353602e-04 1.634035e-12 8.081779e-09 1.285379e-02
## SeedPerPlantNi 2.409630e-04 1.427690e-08 3.581291e-07 1.320100e-01
## SeedPerPlantP 4.932094e-03 8.317956e-13 8.874195e-08 1.110410e-01
## SeedPerPlantS 9.425437e-08 5.689377e-26 3.766471e-17 3.710404e-03
## SeedPerPlantZn 2.819177e-07 6.031918e-15 1.439148e-12 3.205207e-03
## BineSeedPerPlantAl 1.232852e-12 6.229793e-23 1.471661e-21 8.455587e-06
## BineSeedPerPlantB 1.501309e-20 7.205288e-09 1.520164e-14 1.016101e-07
## BineSeedPerPlantCa 7.731877e-04 1.494702e-04 1.233070e-04 6.959087e-02
## BineSeedPerPlantCo 2.274433e-11 1.008029e-14 1.378680e-15 4.956171e-05
## BineSeedPerPlantCu 4.135028e-05 1.683978e-16 3.388557e-11 4.783122e-03
## BineSeedPerPlantFe 4.223878e-06 5.535656e-15 1.472421e-11 2.659472e-03
## BineSeedPerPlantK 5.313297e-11 5.634775e-04 6.737753e-07 4.175128e-08
## BineSeedPerPlantMg 1.963493e-39 1.898343e-14 5.387968e-26 2.146142e-11
## BineSeedPerPlantMo 2.016270e-06 1.280180e-13 3.158046e-11 3.099981e-02
## BineSeedPerPlantNi 8.189738e-06 1.893968e-03 9.362056e-05 1.985167e-01
## BineSeedPerPlantP 3.525044e-02 1.163480e-03 3.562854e-03 3.107058e-03
## BineSeedPerPlantS 6.929372e-04 1.225407e-14 2.715045e-09 4.660481e-02
## BineSeedPerPlantS.1 1.259389e-08 1.634457e-05 1.719497e-07 2.226735e-04
## BineSeedPerPlantZn 2.061031e-07 4.024267e-15 9.105504e-13 2.720896e-03
## SeedMOne NodPerPlant NodPerPlant.1 Mic
## BineM 1.148927e-02 8.113421e-01 2.294759e-03 1.455431e-02
## SeedM 3.835627e-12 1.364780e-01 4.532977e-02 3.306299e-01
## BineSeedM 3.667342e-07 4.340295e-01 9.541708e-03 9.145987e-02
## SeedN 7.454551e-01 3.043066e-01 2.961543e-01 1.721279e-03
## SeedMOne 0.000000e+00 2.712135e-02 7.598849e-01 3.768374e-01
## NodPerPlant 2.712135e-02 0.000000e+00 2.124068e-11 4.531943e-02
## NodPerPlant.1 7.598849e-01 2.124068e-11 0.000000e+00 5.176037e-01
## Mic 3.768374e-01 4.531943e-02 5.176037e-01 0.000000e+00
## Ves 4.846154e-02 2.389451e-01 4.995997e-01 2.519576e-08
## Arb 9.831349e-01 4.534750e-02 7.127810e-01 7.022996e-25
## pH 6.145366e-01 7.264893e-01 5.885437e-01 6.872668e-02
## NitBine 7.872472e-01 3.401588e-01 7.646344e-03 1.997719e-02
## Nit15 1.908160e-04 8.831885e-01 1.641483e-02 1.626954e-01
## NitPerPlant 4.603014e-03 6.221065e-01 1.933406e-01 6.897925e-02
## Nit15PerPlant 5.210818e-01 2.707238e-01 1.088125e-01 8.937536e-01
## NitSeed 6.460111e-04 2.877384e-02 1.755745e-01 7.884334e-01
## NitSeed15 1.931833e-10 1.924655e-05 4.206655e-01 7.075429e-02
## NitSeedPerPlant 6.721596e-15 6.974592e-02 8.287707e-02 3.784840e-01
## Nit15SeedPerPlant 2.591632e-06 9.821613e-01 3.283769e-01 6.364891e-01
## NitBineSeedPerPlant 2.643235e-14 7.947475e-02 7.630264e-02 3.039841e-01
## Nit15BineSeedPerPlant 3.709047e-04 6.597067e-01 8.318318e-01 7.282175e-01
## BineAl 8.712489e-01 7.123651e-02 1.052709e-04 6.811554e-02
## BineB 1.593502e-01 5.376316e-02 3.117137e-04 6.166576e-02
## BineCa 1.727637e-05 6.112391e-04 1.413728e-03 8.538303e-02
## BineCo 9.157359e-01 3.310455e-01 3.051027e-01 3.948282e-02
## BineCu 4.685122e-02 5.827366e-02 6.467852e-01 3.586186e-04
## BineFe 4.551625e-05 3.194799e-03 8.762090e-01 2.551713e-01
## BineK 2.343389e-04 7.112724e-03 8.632387e-01 1.185888e-02
## BineMg 1.752964e-01 3.528923e-01 9.334352e-02 8.589502e-02
## BineMn 3.870323e-01 5.674539e-01 7.258543e-02 7.287135e-01
## BineMo 3.421049e-01 9.326035e-02 4.352135e-02 4.069648e-03
## BineNi 2.839071e-01 4.214210e-01 2.162981e-02 2.942192e-02
## BineP 8.540967e-03 5.109870e-03 9.505376e-01 8.144034e-04
## BineS 7.443073e-01 5.959311e-01 1.881270e-02 3.710757e-04
## BineZn 4.986753e-03 4.109512e-03 9.045765e-01 5.019419e-01
## SeedAl 3.422364e-06 1.227905e-03 3.441796e-01 6.731865e-02
## SeedB 9.247857e-01 2.252335e-02 3.699654e-02 4.979110e-01
## SeedCo 2.168663e-02 3.311650e-03 4.238586e-02 3.970468e-03
## SeedCu 3.350110e-01 5.047546e-01 2.571847e-01 6.509002e-04
## SeedFe 1.153571e-01 3.225606e-01 5.074352e-02 3.631630e-01
## SeedK 2.174261e-01 2.046552e-03 1.094011e-02 1.166672e-02
## SeedMg 6.564451e-04 1.660233e-01 1.827329e-01 5.222887e-04
## SeedMn 2.355726e-03 9.712960e-01 3.420003e-01 2.314176e-02
## SeedMo 7.220257e-01 3.464678e-03 2.086528e-02 5.186742e-03
## SeedNi 9.722718e-01 2.184643e-02 9.486479e-02 1.507674e-02
## SeedP 8.551305e-01 5.880300e-01 3.295960e-01 7.208981e-05
## SeedS 3.785236e-06 4.586943e-01 1.419387e-01 1.742156e-03
## SeedZn 1.176629e-01 7.181031e-01 4.293749e-01 6.490672e-03
## SoilAl 8.626964e-01 5.689698e-01 8.231362e-02 4.792080e-01
## SoilB 5.670697e-02 5.987851e-01 3.992093e-01 2.817833e-01
## SoilCa 1.222979e-03 9.294957e-02 6.077379e-02 6.340649e-01
## SoilCo 2.450010e-03 3.036141e-05 1.481222e-03 2.870553e-01
## SoilCu 1.011099e-01 1.879477e-04 2.960524e-04 6.811619e-01
## SoilFe 2.937610e-02 5.718002e-01 9.612897e-01 8.562705e-01
## SoilK 2.958565e-11 7.640260e-03 9.687143e-01 3.894700e-01
## SoilMg 3.962234e-11 8.884729e-03 9.727853e-01 3.878507e-01
## SoilMn 5.458818e-01 4.454533e-04 1.446053e-02 9.087793e-01
## SoilMo 9.335008e-02 4.100448e-02 3.531213e-03 8.793174e-01
## SoilNi 1.562049e-02 1.152114e-04 9.126317e-04 3.533641e-01
## SoilP 6.154510e-04 5.217284e-08 9.533578e-05 7.933915e-01
## SoilS 1.966330e-01 9.675884e-03 1.374216e-02 8.283900e-01
## SoilZn 7.769142e-01 2.062840e-01 7.478985e-01 4.801573e-03
## BinePerPlantAl 9.356318e-03 5.345398e-01 1.970743e-01 2.572149e-02
## BinePerPlantB 3.993424e-04 1.011553e-01 3.978180e-01 4.725200e-01
## BinePerPLantCa 2.937633e-09 4.259498e-02 3.796191e-01 2.695650e-01
## BinePerPlantCo 4.308921e-03 2.320188e-01 9.812168e-04 5.978797e-02
## BinePerPlantCu 1.068128e-01 1.807564e-01 2.815038e-04 4.100511e-01
## BinePerPlantFe 3.153609e-01 2.729247e-02 3.820938e-03 2.079956e-02
## BinePerPlantK 9.215216e-02 3.968159e-01 9.813650e-04 3.023157e-02
## BinePerPlantMg 2.680638e-01 1.057936e-01 7.142975e-02 9.214682e-02
## BinePerPlantMn 7.179964e-02 3.799846e-01 3.761023e-01 1.340045e-01
## BinePerPlantMo 3.915633e-01 4.044616e-02 2.342172e-01 1.171120e-01
## BinePerPlantNi 6.608659e-04 9.656525e-01 8.642781e-03 4.104410e-02
## BinePerPlantP 8.921779e-01 1.393547e-04 9.983344e-06 8.079181e-01
## BinePerPlantSe 3.459950e-03 6.624212e-01 9.758253e-02 6.500404e-01
## BinePerPLantZn 5.512639e-01 2.046934e-03 2.342378e-02 8.498579e-02
## SeedPerPlantAl 6.421513e-08 7.804224e-01 1.302129e-02 4.875941e-01
## SeedPerPlantB 3.951793e-07 9.537685e-01 1.588413e-02 6.938650e-01
## SeedPerPlantCa 1.706851e-18 3.856005e-01 2.162035e-01 1.554716e-01
## SeedPerPlantCo 4.601521e-13 6.814264e-01 2.031137e-02 1.296833e-01
## SeedPerPlantCu 1.668730e-12 6.114631e-02 5.050353e-01 3.913024e-01
## SeedPerPlantFe 6.222273e-11 6.789916e-02 7.876998e-01 9.361672e-01
## SeedPerPlantK 8.334045e-11 7.902136e-01 1.240784e-02 8.779230e-01
## SeedPerPlantMg 8.022929e-16 4.643407e-01 3.228929e-02 5.519822e-01
## SeedPerPlantMn 7.691120e-15 2.779515e-01 4.334461e-01 4.292482e-01
## SeedPerPlantMo 7.099570e-07 9.039738e-01 6.468975e-03 5.596332e-01
## SeedPerPlantNi 6.384718e-06 6.381128e-01 1.919721e-02 4.101017e-01
## SeedPerPlantP 7.239726e-15 6.985408e-02 5.180390e-01 1.824792e-01
## SeedPerPlantS 3.119784e-14 3.653904e-01 2.916377e-02 7.592230e-01
## SeedPerPlantZn 4.386271e-11 3.697690e-01 2.810580e-01 4.422566e-01
## BineSeedPerPlantAl 6.421513e-08 7.804224e-01 1.302129e-02 4.875941e-01
## BineSeedPerPlantB 5.591237e-03 5.458432e-01 1.696241e-01 2.946887e-02
## BineSeedPerPlantCa 1.889548e-06 9.805331e-02 6.058855e-01 7.144626e-01
## BineSeedPerPlantCo 5.429866e-10 5.462334e-02 3.239750e-01 3.329116e-01
## BineSeedPerPlantCu 1.232032e-12 8.650503e-02 3.743024e-01 4.931121e-01
## BineSeedPerPlantFe 1.058517e-10 8.909326e-02 6.462614e-01 9.750851e-01
## BineSeedPerPlantK 9.711969e-01 4.370392e-02 1.434596e-03 3.276573e-02
## BineSeedPerPlantMg 2.700945e-03 5.737543e-01 7.621753e-04 8.512363e-02
## BineSeedPerPlantMo 1.944500e-13 4.305307e-01 3.190624e-01 6.147989e-01
## BineSeedPerPlantNi 2.942364e-03 3.728820e-01 1.256979e-01 1.516146e-01
## BineSeedPerPlantP 2.024178e-02 7.473379e-02 7.430265e-01 7.288169e-02
## BineSeedPerPlantS 3.569954e-15 8.286406e-02 3.972038e-01 2.718172e-01
## BineSeedPerPlantS.1 3.917570e-02 2.731187e-03 2.874298e-06 7.554777e-01
## BineSeedPerPlantZn 4.436007e-11 3.699794e-01 2.750395e-01 4.486380e-01
## Ves Arb pH NitBine
## BineM 1.151929e-01 2.605397e-04 4.973855e-01 9.248097e-13
## SeedM 3.310524e-02 1.934130e-02 1.248652e-01 2.593620e-05
## BineSeedM 4.525624e-02 2.162542e-03 2.181272e-01 1.045008e-08
## SeedN 3.899656e-01 4.346141e-05 6.533320e-02 2.734681e-10
## SeedMOne 4.846154e-02 9.831349e-01 6.145366e-01 7.872472e-01
## NodPerPlant 2.389451e-01 4.534750e-02 7.264893e-01 3.401588e-01
## NodPerPlant.1 4.995997e-01 7.127810e-01 5.885437e-01 7.646344e-03
## Mic 2.519576e-08 7.022996e-25 6.872668e-02 1.997719e-02
## Ves 0.000000e+00 4.322531e-04 4.013225e-01 4.389072e-01
## Arb 4.322531e-04 0.000000e+00 2.811767e-01 9.854406e-04
## pH 4.013225e-01 2.811767e-01 0.000000e+00 8.010962e-01
## NitBine 4.389072e-01 9.854406e-04 8.010962e-01 0.000000e+00
## Nit15 3.279805e-01 3.241944e-02 2.361596e-01 8.399209e-05
## NitPerPlant 2.730526e-01 2.569171e-02 7.786770e-01 5.692845e-01
## Nit15PerPlant 9.816128e-01 9.424641e-01 6.992481e-02 2.369514e-03
## NitSeed 8.139509e-01 3.801017e-01 6.839225e-02 4.941641e-04
## NitSeed15 1.369895e-01 5.251667e-03 6.652944e-01 1.211781e-02
## NitSeedPerPlant 5.613765e-02 4.650215e-02 2.150381e-01 3.493539e-03
## Nit15SeedPerPlant 3.846067e-02 9.290116e-01 5.635805e-01 4.259977e-01
## NitBineSeedPerPlant 5.563445e-02 3.409613e-02 2.329133e-01 5.200722e-03
## Nit15BineSeedPerPlant 8.055337e-02 9.621317e-01 2.377071e-01 6.501865e-01
## BineAl 8.361744e-01 1.107317e-02 1.485945e-03 8.052290e-13
## BineB 8.292461e-01 8.205825e-03 1.081880e-01 2.886647e-15
## BineCa 5.521243e-01 5.380795e-02 8.619755e-01 2.936696e-12
## BineCo 7.703393e-01 6.825323e-03 1.642402e-02 2.656756e-12
## BineCu 7.330960e-01 9.774436e-06 1.996351e-01 1.148085e-11
## BineFe 4.740626e-01 4.794507e-02 4.521026e-02 1.986111e-02
## BineK 9.053179e-01 7.454037e-04 4.370218e-02 1.876502e-06
## BineMg 3.806603e-01 5.765545e-03 7.632021e-05 3.457526e-12
## BineMn 5.942813e-01 8.311810e-01 2.989945e-15 7.530033e-03
## BineMo 1.962753e-01 5.310146e-03 8.574012e-10 4.694737e-05
## BineNi 9.667760e-01 4.847155e-03 6.868705e-02 4.619443e-17
## BineP 5.834493e-01 9.452515e-06 8.046401e-01 5.392685e-11
## BineS 8.539190e-01 7.519993e-05 3.184586e-02 2.525804e-18
## BineZn 1.852883e-01 1.128449e-01 2.572334e-05 6.640333e-05
## SeedAl 5.270922e-01 5.564541e-03 2.510942e-01 3.727084e-01
## SeedB 1.345914e-01 4.591043e-01 7.053316e-02 8.959012e-02
## SeedCo 1.331342e-02 4.589101e-03 5.704089e-01 2.247277e-01
## SeedCu 4.484853e-01 2.388347e-05 8.264537e-01 3.216368e-05
## SeedFe 2.977550e-01 2.564148e-01 5.647629e-02 3.819009e-02
## SeedK 4.101899e-02 1.231623e-02 8.772414e-02 2.997323e-01
## SeedMg 4.478929e-03 1.019972e-03 2.712490e-01 1.166965e-01
## SeedMn 3.902201e-02 1.597108e-02 2.071711e-02 3.929697e-02
## SeedMo 9.514135e-01 9.143467e-03 8.573485e-08 1.672337e-01
## SeedNi 4.390595e-02 1.831156e-02 5.907107e-02 8.619852e-01
## SeedP 3.047984e-01 2.136000e-06 9.993502e-01 1.355455e-07
## SeedS 9.978160e-03 7.042103e-03 9.350007e-01 3.379911e-01
## SeedZn 1.121870e-02 1.325155e-02 5.538337e-03 1.364500e-01
## SoilAl 2.063014e-01 8.030134e-01 1.461978e-09 8.161267e-01
## SoilB 6.822649e-01 3.687444e-01 2.564459e-02 4.394178e-02
## SoilCa 2.297667e-01 5.255699e-01 2.941081e-01 3.020725e-04
## SoilCo 4.678691e-01 3.731124e-01 1.471802e-01 6.464203e-02
## SoilCu 2.238593e-01 5.560720e-01 4.563705e-01 3.304700e-07
## SoilFe 4.943105e-01 9.749811e-01 8.225832e-05 7.796976e-01
## SoilK 3.417522e-01 9.548662e-02 3.313528e-01 2.342918e-01
## SoilMg 3.308912e-01 9.520902e-02 3.703416e-01 2.000535e-01
## SoilMn 2.852540e-02 8.844033e-01 1.232476e-05 2.891089e-01
## SoilMo 3.689511e-01 6.775337e-01 3.230612e-03 2.726495e-02
## SoilNi 4.934131e-01 4.985380e-01 2.708695e-01 1.758248e-01
## SoilP 3.301750e-01 7.147953e-01 3.631301e-01 9.604759e-02
## SoilS 5.498576e-03 6.963395e-01 8.561094e-01 3.232358e-01
## SoilZn 8.226560e-01 6.475205e-03 3.715725e-01 3.599810e-02
## BinePerPlantAl 3.906745e-02 1.560270e-03 1.831849e-01 1.360965e-05
## BinePerPlantB 5.599894e-02 3.500957e-01 1.424032e-01 5.602082e-01
## BinePerPLantCa 2.813280e-02 4.105176e-02 3.176495e-01 8.710135e-02
## BinePerPlantCo 7.024987e-02 5.307062e-03 3.278071e-01 6.340316e-05
## BinePerPlantCu 8.415083e-02 8.134344e-02 9.633688e-03 3.873245e-04
## BinePerPlantFe 3.205012e-01 5.793751e-03 2.882361e-01 1.208475e-06
## BinePerPlantK 6.734791e-02 1.180019e-03 8.885569e-01 6.145828e-10
## BinePerPlantMg 2.786900e-01 7.734752e-02 4.669526e-05 1.550046e-01
## BinePerPlantMn 3.532243e-01 1.366323e-01 4.492333e-10 1.025331e-01
## BinePerPlantMo 6.280195e-02 3.929679e-01 1.714965e-12 4.232026e-01
## BinePerPlantNi 5.533594e-02 2.092443e-03 8.625682e-01 7.651411e-06
## BinePerPlantP 8.282992e-02 8.434370e-01 3.153363e-01 1.663900e-01
## BinePerPlantSe 1.555519e-02 1.018734e-01 1.247495e-03 1.214072e-02
## BinePerPLantZn 8.156549e-01 1.254300e-01 7.018069e-06 2.073057e-01
## SeedPerPlantAl 1.670009e-02 8.036496e-02 3.621123e-01 3.811278e-06
## SeedPerPlantB 1.311526e-02 1.427942e-01 8.663454e-01 1.365039e-05
## SeedPerPlantCa 9.898726e-04 5.388973e-01 6.632340e-01 2.778268e-01
## SeedPerPlantCo 5.621777e-04 6.403515e-01 5.323772e-01 4.844783e-02
## SeedPerPlantCu 5.102076e-03 9.529130e-01 1.033209e-01 1.477427e-01
## SeedPerPlantFe 1.609419e-02 3.855198e-01 7.211243e-01 4.965137e-02
## SeedPerPlantK 9.797712e-03 3.399254e-01 5.408915e-01 5.153576e-05
## SeedPerPlantMg 2.602017e-03 5.567117e-01 2.925874e-01 7.411844e-03
## SeedPerPlantMn 2.563340e-03 9.181144e-01 7.209056e-01 5.241324e-02
## SeedPerPlantMo 1.216252e-01 6.032831e-01 5.456942e-06 2.351691e-02
## SeedPerPlantNi 6.299552e-03 9.483905e-01 5.588253e-01 4.628849e-03
## SeedPerPlantP 4.222379e-03 6.224236e-01 8.872736e-02 5.967239e-01
## SeedPerPlantS 1.164972e-02 3.858296e-01 2.106091e-01 2.474095e-03
## SeedPerPlantZn 9.827060e-04 7.348888e-01 7.904461e-01 8.602889e-03
## BineSeedPerPlantAl 1.670009e-02 8.036496e-02 3.621123e-01 3.811278e-06
## BineSeedPerPlantB 3.334888e-02 1.700334e-03 2.011131e-01 8.461478e-06
## BineSeedPerPlantCa 1.717322e-02 4.720278e-01 2.176595e-01 7.569761e-01
## BineSeedPerPlantCo 2.011062e-02 5.324933e-02 3.172851e-01 7.694480e-02
## BineSeedPerPlantCu 4.317635e-03 7.913804e-01 1.343727e-01 8.993896e-02
## BineSeedPerPlantFe 1.433738e-02 3.445461e-01 6.227572e-01 3.444383e-02
## BineSeedPerPlantK 1.656236e-01 5.690588e-03 3.753153e-01 5.915650e-08
## BineSeedPerPlantMg 2.257306e-02 3.458213e-03 7.159835e-01 1.955172e-09
## BineSeedPerPlantMo 2.692025e-03 7.276334e-01 3.750993e-01 4.166338e-02
## BineSeedPerPlantNi 1.862406e-01 9.317156e-02 2.274687e-07 2.551381e-02
## BineSeedPerPlantP 5.653784e-03 4.278182e-01 3.593869e-12 8.442703e-01
## BineSeedPerPlantS 3.468977e-03 8.322708e-01 1.059768e-01 3.827288e-01
## BineSeedPerPlantS.1 1.926021e-02 6.548575e-01 1.990589e-01 2.977540e-02
## BineSeedPerPlantZn 9.476208e-04 7.214189e-01 8.215385e-01 8.229743e-03
## Nit15 NitPerPlant Nit15PerPlant NitSeed
## BineM 2.627838e-07 4.159787e-09 8.647113e-01 1.076526e-01
## SeedM 2.860928e-09 1.734642e-05 2.251138e-01 4.371717e-01
## BineSeedM 1.678371e-09 1.177882e-07 4.201862e-01 7.973062e-01
## SeedN 1.319500e-03 1.540250e-04 7.939532e-01 8.895170e-03
## SeedMOne 1.908160e-04 4.603014e-03 5.210818e-01 6.460111e-04
## NodPerPlant 8.831885e-01 6.221065e-01 2.707238e-01 2.877384e-02
## NodPerPlant.1 1.641483e-02 1.933406e-01 1.088125e-01 1.755745e-01
## Mic 1.626954e-01 6.897925e-02 8.937536e-01 7.884334e-01
## Ves 3.279805e-01 2.730526e-01 9.816128e-01 8.139509e-01
## Arb 3.241944e-02 2.569171e-02 9.424641e-01 3.801017e-01
## pH 2.361596e-01 7.786770e-01 6.992481e-02 6.839225e-02
## NitBine 8.399209e-05 5.692845e-01 2.369514e-03 4.941641e-04
## Nit15 0.000000e+00 8.263281e-03 1.162197e-08 3.729885e-01
## NitPerPlant 8.263281e-03 0.000000e+00 1.003258e-04 3.009781e-01
## Nit15PerPlant 1.162197e-08 1.003258e-04 0.000000e+00 9.585211e-01
## NitSeed 3.729885e-01 3.009781e-01 9.585211e-01 0.000000e+00
## NitSeed15 5.824581e-08 6.090817e-06 4.822638e-01 9.099369e-03
## NitSeedPerPlant 6.400660e-09 1.655466e-05 2.468964e-01 1.114233e-02
## Nit15SeedPerPlant 1.438410e-01 4.824122e-04 9.615888e-02 2.922395e-01
## NitBineSeedPerPlant 8.543277e-09 3.144617e-07 5.019812e-01 1.260850e-02
## Nit15BineSeedPerPlant 4.849131e-01 4.514795e-06 2.016872e-06 3.854942e-01
## BineAl 4.263050e-04 1.314950e-02 2.931060e-01 7.331820e-04
## BineB 1.887834e-03 8.167929e-02 1.254555e-01 2.944652e-04
## BineCa 1.702860e-01 3.631514e-01 1.888098e-02 7.371555e-06
## BineCo 1.125461e-02 5.214664e-02 5.523773e-01 1.259498e-02
## BineCu 3.326981e-06 1.497282e-03 1.758995e-01 1.332868e-01
## BineFe 2.192472e-03 6.107498e-06 2.869216e-01 5.900874e-01
## BineK 5.249169e-06 3.334440e-02 7.868120e-02 5.846227e-01
## BineMg 3.683889e-04 5.529723e-03 5.392229e-01 9.523567e-03
## BineMn 6.629924e-01 3.614579e-01 5.626458e-01 6.118898e-02
## BineMo 5.788134e-05 4.188662e-01 3.996225e-07 3.496059e-01
## BineNi 4.315117e-03 1.603484e-01 1.624331e-01 2.020687e-04
## BineP 2.783780e-06 1.292021e-04 4.622355e-01 1.822729e-01
## BineS 1.354745e-03 1.608979e-01 4.794658e-02 1.880375e-02
## BineZn 5.610550e-03 1.180256e-02 8.991761e-01 5.547664e-01
## SeedAl 1.047446e-02 7.201373e-05 2.047705e-01 5.705057e-02
## SeedB 9.113147e-01 7.947405e-01 9.460142e-01 4.427388e-01
## SeedCo 2.469668e-01 6.003671e-01 1.292138e-01 4.571770e-01
## SeedCu 1.094029e-01 3.546417e-04 1.880241e-01 5.391487e-02
## SeedFe 6.064964e-01 6.821187e-01 4.564312e-01 3.657904e-02
## SeedK 6.816193e-02 7.454489e-02 7.853029e-04 8.938128e-01
## SeedMg 2.187029e-01 2.221970e-01 2.471794e-02 1.808628e-02
## SeedMn 7.363059e-01 7.797488e-01 7.175511e-01 1.432733e-01
## SeedMo 2.882744e-01 6.023673e-02 7.718181e-01 2.683105e-01
## SeedNi 2.670120e-01 3.519667e-04 2.609902e-02 6.330737e-01
## SeedP 7.543415e-02 1.157500e-03 3.605527e-01 4.811336e-03
## SeedS 4.698752e-03 7.696553e-01 7.233489e-03 8.274410e-03
## SeedZn 9.241256e-01 7.456309e-01 8.096439e-01 5.456791e-01
## SoilAl 1.997516e-01 4.425149e-02 2.159575e-03 4.487984e-01
## SoilB 6.028021e-01 3.716003e-01 8.256779e-01 1.818544e-01
## SoilCa 4.971269e-01 9.810376e-01 8.868443e-01 4.153288e-02
## SoilCo 8.135614e-01 4.712441e-01 7.727013e-01 6.962251e-01
## SoilCu 1.217540e-01 9.692018e-01 7.651022e-02 1.098642e-01
## SoilFe 8.250728e-01 7.039149e-01 2.389926e-01 8.549230e-01
## SoilK 4.302668e-03 1.895262e-05 3.028009e-01 3.294541e-01
## SoilMg 2.473677e-03 1.924449e-05 3.810417e-01 3.530141e-01
## SoilMn 4.310201e-01 1.365776e-01 8.223261e-01 7.840805e-01
## SoilMo 7.751516e-01 2.323489e-01 6.433909e-01 2.028566e-01
## SoilNi 9.841661e-01 3.388779e-01 9.278517e-01 7.786241e-01
## SoilP 3.310583e-01 6.501416e-01 9.445555e-01 2.637670e-01
## SoilS 6.828917e-01 1.077652e-01 5.517928e-01 4.948461e-01
## SoilZn 7.146355e-01 2.220285e-04 2.140115e-02 4.253990e-01
## BinePerPlantAl 4.675483e-05 1.006295e-13 2.266859e-01 7.285713e-01
## BinePerPlantB 2.733402e-01 3.239943e-10 3.352521e-04 1.119663e-01
## BinePerPLantCa 2.013450e-04 2.492275e-17 3.248872e-02 1.624875e-01
## BinePerPlantCo 2.168507e-06 7.643619e-14 4.977348e-01 5.600998e-01
## BinePerPlantCu 5.769171e-03 3.344922e-10 7.277604e-02 3.512500e-01
## BinePerPlantFe 7.630697e-03 3.452431e-04 9.984760e-01 2.464360e-01
## BinePerPlantK 2.407793e-05 1.511438e-11 4.314384e-01 7.949949e-02
## BinePerPlantMg 1.563160e-02 1.743801e-10 7.779348e-02 7.652422e-01
## BinePerPlantMn 7.876810e-03 1.895465e-04 9.107984e-01 9.984832e-01
## BinePerPlantMo 1.554352e-02 1.469690e-02 3.264213e-07 6.529880e-01
## BinePerPlantNi 2.177260e-06 1.099452e-15 3.337945e-01 7.254336e-01
## BinePerPlantP 1.882059e-01 1.722796e-08 1.414057e-02 5.347190e-01
## BinePerPlantSe 1.009832e-03 1.474841e-15 1.853065e-02 5.867733e-01
## BinePerPLantZn 1.267157e-01 6.204478e-05 2.371280e-01 4.435974e-01
## SeedPerPlantAl 8.944122e-09 3.056529e-04 8.414823e-02 8.779574e-01
## SeedPerPlantB 6.691295e-06 2.950598e-04 3.905614e-01 9.497413e-01
## SeedPerPlantCa 1.005668e-04 1.772726e-03 5.014112e-01 5.382768e-02
## SeedPerPlantCo 1.688565e-07 9.978854e-03 3.527043e-02 2.811052e-01
## SeedPerPlantCu 5.532680e-07 4.635166e-03 1.204515e-01 3.362014e-02
## SeedPerPlantFe 8.239059e-07 1.725753e-03 1.631711e-01 1.027955e-01
## SeedPerPlantK 7.286262e-10 5.785351e-03 1.206994e-02 5.637507e-01
## SeedPerPlantMg 7.954193e-09 2.325877e-03 4.041300e-02 1.277466e-01
## SeedPerPlantMn 4.003375e-06 1.186032e-03 2.998974e-01 2.354806e-01
## SeedPerPlantMo 4.499922e-04 1.420540e-01 1.259330e-01 5.225484e-01
## SeedPerPlantNi 1.083892e-03 4.521849e-01 2.521425e-02 5.987715e-01
## SeedPerPlantP 9.481481e-06 8.837397e-03 1.884596e-01 5.454637e-03
## SeedPerPlantS 1.592142e-09 3.210782e-03 2.499701e-02 1.289826e-01
## SeedPerPlantZn 2.203402e-06 2.757362e-04 3.980132e-01 5.326631e-01
## BineSeedPerPlantAl 8.944122e-09 3.056529e-04 8.414823e-02 8.779574e-01
## BineSeedPerPlantB 2.814046e-05 1.256281e-13 2.610564e-01 7.395109e-01
## BineSeedPerPlantCa 8.282887e-02 1.401620e-10 2.290366e-03 6.821286e-02
## BineSeedPerPlantCo 9.443630e-05 1.664149e-16 5.478565e-02 1.583194e-01
## BineSeedPerPlantCu 1.399277e-07 1.155884e-03 1.477916e-01 4.495898e-02
## BineSeedPerPlantFe 6.138523e-07 6.772450e-04 2.091095e-01 1.247141e-01
## BineSeedPerPlantK 3.808725e-04 9.658205e-05 6.623380e-01 3.254280e-01
## BineSeedPerPlantMg 4.067954e-07 4.079380e-11 8.314136e-01 2.481954e-01
## BineSeedPerPlantMo 2.170653e-06 7.741764e-05 4.698877e-01 2.458803e-01
## BineSeedPerPlantNi 2.681804e-04 1.451378e-05 8.230672e-01 8.842821e-01
## BineSeedPerPlantP 2.434532e-01 9.066102e-03 1.206256e-04 8.064537e-01
## BineSeedPerPlantS 2.444340e-06 1.829787e-03 2.398908e-01 8.627300e-03
## BineSeedPerPlantS.1 3.804025e-03 8.221869e-10 1.508917e-01 9.404080e-01
## BineSeedPerPlantZn 2.048986e-06 2.134042e-04 4.174821e-01 5.398152e-01
## NitSeed15 NitSeedPerPlant Nit15SeedPerPlant
## BineM 1.053072e-07 1.301900e-09 2.171347e-03
## SeedM 2.517244e-14 2.644472e-38 3.582088e-07
## BineSeedM 1.287651e-12 1.918494e-22 8.667505e-06
## SeedN 2.657828e-04 1.271378e-04 2.701152e-02
## SeedMOne 1.931833e-10 6.721596e-15 2.591632e-06
## NodPerPlant 1.924655e-05 6.974592e-02 9.821613e-01
## NodPerPlant.1 4.206655e-01 8.287707e-02 3.283769e-01
## Mic 7.075429e-02 3.784840e-01 6.364891e-01
## Ves 1.369895e-01 5.613765e-02 3.846067e-02
## Arb 5.251667e-03 4.650215e-02 9.290116e-01
## pH 6.652944e-01 2.150381e-01 5.635805e-01
## NitBine 1.211781e-02 3.493539e-03 4.259977e-01
## Nit15 5.824581e-08 6.400660e-09 1.438410e-01
## NitPerPlant 6.090817e-06 1.655466e-05 4.824122e-04
## Nit15PerPlant 4.822638e-01 2.468964e-01 9.615888e-02
## NitSeed 9.099369e-03 1.114233e-02 2.922395e-01
## NitSeed15 0.000000e+00 1.246299e-15 4.049431e-02
## NitSeedPerPlant 1.246299e-15 0.000000e+00 4.863459e-07
## Nit15SeedPerPlant 4.049431e-02 4.863459e-07 0.000000e+00
## NitBineSeedPerPlant 3.024801e-16 7.080759e-62 2.576024e-07
## Nit15BineSeedPerPlant 1.492063e-01 3.560090e-04 8.622320e-27
## BineAl 4.138181e-02 4.302545e-04 9.325318e-02
## BineB 3.158226e-01 2.484675e-02 6.133294e-01
## BineCa 9.506941e-02 3.867432e-01 1.282990e-01
## BineCo 1.344524e-03 1.210142e-03 6.181736e-01
## BineCu 5.345458e-07 9.494570e-06 8.760311e-02
## BineFe 9.485194e-08 1.781391e-07 1.270284e-02
## BineK 1.368291e-08 2.142893e-08 5.345308e-02
## BineMg 2.079643e-05 1.628971e-06 1.220930e-01
## BineMn 5.553305e-01 6.128176e-02 8.424253e-01
## BineMo 9.310516e-01 8.384447e-01 2.095519e-01
## BineNi 6.395743e-02 2.213365e-02 8.914602e-01
## BineP 6.457015e-11 6.738350e-08 3.931020e-02
## BineS 4.879032e-02 1.281675e-02 4.171883e-01
## BineZn 4.627705e-07 1.472944e-07 1.311339e-01
## SeedAl 6.204064e-09 1.566388e-07 6.459254e-05
## SeedB 3.109441e-01 7.106241e-01 4.490306e-02
## SeedCo 2.752629e-01 3.977744e-01 2.511978e-03
## SeedCu 4.925017e-03 5.303414e-03 9.305443e-02
## SeedFe 9.020128e-01 7.656567e-01 5.072709e-02
## SeedK 2.458021e-01 4.079821e-01 6.733156e-02
## SeedMg 8.933648e-01 1.490172e-01 1.372652e-01
## SeedMn 7.896778e-01 6.271585e-01 1.641795e-03
## SeedMo 6.428613e-03 6.445901e-01 8.159635e-01
## SeedNi 1.938690e-02 4.496372e-01 8.244606e-01
## SeedP 1.390358e-02 3.004457e-02 2.951001e-01
## SeedS 1.220681e-01 1.504094e-03 2.891921e-02
## SeedZn 8.927162e-01 7.288986e-01 1.678510e-01
## SoilAl 6.361652e-01 1.492066e-01 2.476646e-01
## SoilB 3.336735e-01 1.384332e-01 5.937586e-01
## SoilCa 2.134241e-01 4.326253e-01 3.180532e-01
## SoilCo 7.002176e-02 3.135096e-01 4.793910e-01
## SoilCu 3.963675e-01 3.955366e-01 3.361183e-01
## SoilFe 4.038940e-01 3.833493e-02 6.049728e-03
## SoilK 4.996040e-10 1.441326e-09 7.220997e-05
## SoilMg 4.408498e-10 1.171403e-09 7.332599e-05
## SoilMn 3.610059e-01 5.872871e-01 5.282112e-01
## SoilMo 4.776692e-01 3.683674e-01 9.757961e-01
## SoilNi 8.126602e-02 5.680243e-01 7.819437e-01
## SoilP 8.986218e-04 1.991217e-01 8.296083e-01
## SoilS 6.540396e-01 5.384687e-01 7.975513e-01
## SoilZn 5.086759e-02 1.473484e-01 5.977514e-01
## BinePerPlantAl 5.937317e-08 1.942423e-06 1.308471e-03
## BinePerPlantB 1.149821e-05 6.122310e-03 1.292357e-03
## BinePerPLantCa 5.441099e-14 2.764867e-13 3.583268e-06
## BinePerPlantCo 1.592485e-05 8.419669e-07 7.434936e-05
## BinePerPlantCu 8.701765e-04 1.517805e-05 2.385459e-03
## BinePerPlantFe 1.063841e-01 8.991809e-02 1.496049e-01
## BinePerPlantK 8.786891e-06 1.234087e-06 2.978958e-03
## BinePerPlantMg 4.100276e-02 9.909177e-02 4.611473e-03
## BinePerPlantMn 4.205778e-02 2.101258e-01 1.849414e-02
## BinePerPlantMo 8.706802e-02 1.703942e-01 1.285461e-01
## BinePerPlantNi 1.806971e-08 1.565519e-09 6.515642e-05
## BinePerPlantP 5.717214e-01 7.635348e-02 9.402755e-03
## BinePerPlantSe 1.249768e-07 1.847547e-07 7.487694e-04
## BinePerPLantZn 9.619941e-01 8.761227e-01 7.399232e-02
## SeedPerPlantAl 3.770000e-08 5.285547e-18 1.215700e-06
## SeedPerPlantB 8.609352e-07 3.001075e-14 4.091336e-07
## SeedPerPlantCa 4.510612e-07 3.772686e-15 2.521256e-11
## SeedPerPlantCo 1.096555e-05 5.673756e-13 7.780988e-08
## SeedPerPlantCu 6.657836e-10 1.865400e-16 4.931292e-06
## SeedPerPlantFe 1.662289e-08 2.112600e-14 7.659851e-08
## SeedPerPlantK 2.846611e-08 6.905592e-20 7.745784e-07
## SeedPerPlantMg 5.949807e-10 5.565633e-23 1.926601e-06
## SeedPerPlantMn 4.044253e-08 3.142040e-13 2.925155e-10
## SeedPerPlantMo 2.542212e-04 1.210318e-12 1.041307e-03
## SeedPerPlantNi 4.879465e-03 5.683674e-08 3.898267e-04
## SeedPerPlantP 7.849290e-09 3.144391e-15 3.487559e-06
## SeedPerPlantS 2.793658e-10 6.411650e-26 4.767522e-06
## SeedPerPlantZn 7.174653e-09 5.639115e-13 3.050406e-08
## BineSeedPerPlantAl 3.770000e-08 5.285547e-18 1.215700e-06
## BineSeedPerPlantB 3.109667e-08 5.738039e-07 7.416181e-04
## BineSeedPerPlantCa 3.947503e-07 1.116666e-04 2.786453e-05
## BineSeedPerPlantCo 3.799795e-14 3.181319e-14 1.490655e-06
## BineSeedPerPlantCu 1.583359e-10 1.008508e-17 1.903691e-06
## BineSeedPerPlantFe 9.906789e-09 5.581748e-15 5.179171e-08
## BineSeedPerPlantK 1.513685e-02 4.316875e-03 2.936323e-02
## BineSeedPerPlantMg 7.992061e-08 2.076041e-10 2.315924e-04
## BineSeedPerPlantMo 3.797912e-08 1.493843e-12 1.167144e-10
## BineSeedPerPlantNi 2.918506e-03 7.132129e-03 1.142126e-03
## BineSeedPerPlantP 8.155836e-03 1.873969e-03 6.962220e-03
## BineSeedPerPlantS 8.090583e-10 4.811618e-17 1.217134e-06
## BineSeedPerPlantS.1 2.525086e-02 5.608667e-05 1.637797e-04
## BineSeedPerPlantZn 5.651432e-09 4.220375e-13 2.844884e-08
## NitBineSeedPerPlant Nit15BineSeedPerPlant BineAl
## BineM 9.592183e-11 1.289857e-02 3.271017e-12
## SeedM 4.024084e-37 3.334681e-04 3.913589e-06
## BineSeedM 4.950142e-24 9.754174e-04 2.561218e-09
## SeedN 5.289828e-05 4.990483e-02 8.766065e-11
## SeedMOne 2.643235e-14 3.709047e-04 8.712489e-01
## NodPerPlant 7.947475e-02 6.597067e-01 7.123651e-02
## NodPerPlant.1 7.630264e-02 8.318318e-01 1.052709e-04
## Mic 3.039841e-01 7.282175e-01 6.811554e-02
## Ves 5.563445e-02 8.055337e-02 8.361744e-01
## Arb 3.409613e-02 9.621317e-01 1.107317e-02
## pH 2.329133e-01 2.377071e-01 1.485945e-03
## NitBine 5.200722e-03 6.501865e-01 8.052290e-13
## Nit15 8.543277e-09 4.849131e-01 4.263050e-04
## NitPerPlant 3.144617e-07 4.514795e-06 1.314950e-02
## Nit15PerPlant 5.019812e-01 2.016872e-06 2.931060e-01
## NitSeed 1.260850e-02 3.854942e-01 7.331820e-04
## NitSeed15 3.024801e-16 1.492063e-01 4.138181e-02
## NitSeedPerPlant 7.080759e-62 3.560090e-04 4.302545e-04
## Nit15SeedPerPlant 2.576024e-07 8.622320e-27 9.325318e-02
## NitBineSeedPerPlant 0.000000e+00 1.049489e-04 3.286174e-04
## Nit15BineSeedPerPlant 1.049489e-04 0.000000e+00 3.161613e-01
## BineAl 3.286174e-04 3.161613e-01 0.000000e+00
## BineB 2.135144e-02 8.753852e-01 1.701622e-17
## BineCa 3.611480e-01 2.798723e-02 1.374977e-07
## BineCo 1.120674e-03 8.474254e-01 3.051638e-13
## BineCu 5.701816e-06 3.620267e-01 9.032497e-07
## BineFe 4.516772e-08 1.161032e-02 1.246198e-04
## BineK 4.107002e-08 3.464492e-01 3.887145e-07
## BineMg 1.363492e-06 2.884204e-01 3.877547e-18
## BineMn 6.336978e-02 6.963739e-01 7.584113e-10
## BineMo 9.197347e-01 3.654368e-03 2.975740e-01
## BineNi 2.121353e-02 6.763146e-01 1.993227e-16
## BineP 2.888196e-08 1.499635e-01 8.914961e-08
## BineS 1.269622e-02 9.485883e-01 1.289829e-07
## BineZn 1.730757e-07 2.219694e-01 2.137187e-08
## SeedAl 5.953462e-08 1.063343e-04 1.570490e-01
## SeedB 7.063128e-01 8.693379e-02 3.856580e-01
## SeedCo 4.635172e-01 5.655439e-02 4.147020e-01
## SeedCu 2.516937e-03 5.314445e-02 2.427549e-04
## SeedFe 8.154286e-01 1.777047e-01 2.568656e-02
## SeedK 5.639636e-01 7.701189e-01 5.940232e-01
## SeedMg 2.255063e-01 6.903290e-01 6.962811e-02
## SeedMn 6.717629e-01 1.337151e-02 2.979724e-03
## SeedMo 5.220231e-01 7.580951e-01 1.690759e-01
## SeedNi 2.750679e-01 3.034588e-01 2.116171e-01
## SeedP 1.646230e-02 2.157067e-01 1.315779e-05
## SeedS 3.487351e-03 4.187950e-01 7.604491e-01
## SeedZn 7.180110e-01 2.856947e-01 7.447502e-03
## SoilAl 1.146415e-01 3.196188e-02 1.079252e-03
## SoilB 1.364395e-01 7.148297e-01 7.746280e-01
## SoilCa 4.639196e-01 4.313949e-01 4.011186e-02
## SoilCo 3.883451e-01 4.787265e-01 1.532129e-01
## SoilCu 4.235896e-01 8.908524e-01 6.642762e-05
## SoilFe 4.757411e-02 5.359489e-03 1.213426e-01
## SoilK 4.379350e-10 1.801262e-04 6.995394e-02
## SoilMg 3.574409e-10 2.403943e-04 6.125387e-02
## SoilMn 7.315656e-01 6.557993e-01 8.886249e-01
## SoilMo 3.286197e-01 8.388197e-01 6.931141e-06
## SoilNi 6.686787e-01 8.423815e-01 1.594513e-01
## SoilP 2.098649e-01 8.348996e-01 2.640786e-02
## SoilS 4.499961e-01 6.561536e-01 1.463844e-01
## SoilZn 7.855384e-02 1.870837e-01 1.140884e-02
## BinePerPlantAl 1.089113e-07 1.402235e-03 2.845590e-03
## BinePerPlantB 1.251573e-03 2.606024e-05 4.938829e-01
## BinePerPLantCa 7.528009e-16 1.371072e-06 7.925728e-03
## BinePerPlantCo 4.212672e-08 3.434095e-04 9.110472e-05
## BinePerPlantCu 1.741743e-06 9.883925e-04 1.983671e-07
## BinePerPlantFe 4.744414e-02 2.252510e-01 2.821165e-04
## BinePerPlantK 9.072476e-08 4.961291e-03 1.619725e-09
## BinePerPlantMg 2.944447e-02 1.905360e-03 4.600431e-01
## BinePerPlantMn 1.147196e-01 4.335166e-02 6.980366e-01
## BinePerPlantMo 1.195297e-01 1.554713e-03 1.152154e-01
## BinePerPlantNi 2.616263e-11 1.866474e-04 6.513732e-06
## BinePerPlantP 2.507425e-02 1.456656e-03 2.373927e-03
## BinePerPlantSe 6.098860e-09 1.310825e-04 1.229626e-05
## BinePerPLantZn 7.845970e-01 4.860303e-02 7.816089e-01
## SeedPerPlantAl 9.711025e-18 1.390530e-03 1.315577e-06
## SeedPerPlantB 2.883431e-14 1.919708e-04 2.159629e-05
## SeedPerPlantCa 9.617489e-15 8.471602e-07 1.221195e-01
## SeedPerPlantCo 1.987831e-12 6.834309e-04 1.380824e-02
## SeedPerPlantCu 1.145857e-15 2.176877e-03 1.921210e-02
## SeedPerPlantFe 4.504178e-14 2.097392e-04 2.310796e-02
## SeedPerPlantK 1.636265e-18 3.303384e-03 2.307100e-05
## SeedPerPlantMg 2.083759e-21 2.722023e-03 2.134149e-03
## SeedPerPlantMn 4.513036e-13 6.816663e-06 7.180938e-02
## SeedPerPlantMo 1.766530e-11 3.548380e-02 2.810618e-05
## SeedPerPlantNi 3.146393e-07 4.196459e-02 6.032275e-03
## SeedPerPlantP 1.960866e-14 1.288363e-03 1.092712e-01
## SeedPerPlantS 1.375845e-23 5.302717e-03 2.505555e-04
## SeedPerPlantZn 4.464690e-13 4.630437e-05 1.276239e-02
## BineSeedPerPlantAl 9.711025e-18 1.390530e-03 1.315577e-06
## BineSeedPerPlantB 2.828398e-08 9.962938e-04 1.861894e-03
## BineSeedPerPlantCa 1.448967e-05 1.119071e-06 7.560063e-01
## BineSeedPerPlantCo 6.744109e-17 1.091343e-06 6.720660e-03
## BineSeedPerPlantCu 3.788476e-17 1.148090e-03 1.031702e-02
## BineSeedPerPlantFe 8.645723e-15 1.345360e-04 1.249695e-02
## BineSeedPerPlantK 1.815240e-03 9.810606e-02 2.367553e-05
## BineSeedPerPlantMg 7.261820e-12 1.648433e-03 1.962860e-09
## BineSeedPerPlantMo 7.411262e-13 2.042046e-06 7.130417e-02
## BineSeedPerPlantNi 2.640935e-03 8.911164e-03 6.381248e-01
## BineSeedPerPlantP 1.287561e-03 1.304517e-04 1.294443e-02
## BineSeedPerPlantS 1.993908e-16 5.942077e-04 5.545227e-02
## BineSeedPerPlantS.1 7.635374e-06 1.684275e-04 8.973166e-05
## BineSeedPerPlantZn 3.095844e-13 4.160866e-05 1.148247e-02
## BineB BineCa BineCo BineCu
## BineM 1.186995e-10 6.585652e-04 3.623929e-10 4.091990e-14
## SeedM 1.082446e-03 9.030738e-01 3.114072e-05 5.314457e-08
## BineSeedM 1.605944e-06 1.175478e-01 8.087920e-08 1.079105e-11
## SeedN 9.770748e-09 4.492061e-04 4.197235e-09 6.236152e-08
## SeedMOne 1.593502e-01 1.727637e-05 9.157359e-01 4.685122e-02
## NodPerPlant 5.376316e-02 6.112391e-04 3.310455e-01 5.827366e-02
## NodPerPlant.1 3.117137e-04 1.413728e-03 3.051027e-01 6.467852e-01
## Mic 6.166576e-02 8.538303e-02 3.948282e-02 3.586186e-04
## Ves 8.292461e-01 5.521243e-01 7.703393e-01 7.330960e-01
## Arb 8.205825e-03 5.380795e-02 6.825323e-03 9.774436e-06
## pH 1.081880e-01 8.619755e-01 1.642402e-02 1.996351e-01
## NitBine 2.886647e-15 2.936696e-12 2.656756e-12 1.148085e-11
## Nit15 1.887834e-03 1.702860e-01 1.125461e-02 3.326981e-06
## NitPerPlant 8.167929e-02 3.631514e-01 5.214664e-02 1.497282e-03
## Nit15PerPlant 1.254555e-01 1.888098e-02 5.523773e-01 1.758995e-01
## NitSeed 2.944652e-04 7.371555e-06 1.259498e-02 1.332868e-01
## NitSeed15 3.158226e-01 9.506941e-02 1.344524e-03 5.345458e-07
## NitSeedPerPlant 2.484675e-02 3.867432e-01 1.210142e-03 9.494570e-06
## Nit15SeedPerPlant 6.133294e-01 1.282990e-01 6.181736e-01 8.760311e-02
## NitBineSeedPerPlant 2.135144e-02 3.611480e-01 1.120674e-03 5.701816e-06
## Nit15BineSeedPerPlant 8.753852e-01 2.798723e-02 8.474254e-01 3.620267e-01
## BineAl 1.701622e-17 1.374977e-07 3.051638e-13 9.032497e-07
## BineB 0.000000e+00 6.602623e-16 2.610771e-13 5.248323e-08
## BineCa 6.602623e-16 0.000000e+00 1.235919e-07 1.155718e-03
## BineCo 2.610771e-13 1.235919e-07 0.000000e+00 2.965681e-12
## BineCu 5.248323e-08 1.155718e-03 2.965681e-12 0.000000e+00
## BineFe 1.444891e-03 8.345023e-01 1.377078e-08 7.302735e-10
## BineK 3.027035e-05 6.268174e-02 1.013286e-11 4.795076e-12
## BineMg 1.749444e-14 3.545332e-05 6.164789e-24 1.790308e-10
## BineMn 3.170877e-07 2.766172e-03 1.441151e-08 3.055816e-01
## BineMo 7.095143e-03 2.220306e-06 1.904275e-01 1.448339e-04
## BineNi 1.658796e-21 9.846131e-16 1.673878e-28 2.007164e-10
## BineP 1.159490e-07 5.546729e-03 3.604469e-15 5.174527e-29
## BineS 4.880359e-12 1.219427e-11 1.237466e-10 8.626959e-16
## BineZn 1.120864e-05 1.863685e-01 2.165918e-17 3.302256e-08
## SeedAl 7.444854e-01 4.437457e-03 2.354566e-01 5.704547e-03
## SeedB 4.623281e-01 1.257888e-01 7.860842e-01 7.555978e-01
## SeedCo 2.044802e-02 1.963948e-02 1.496326e-04 1.969454e-02
## SeedCu 2.769234e-05 1.327073e-02 4.787936e-05 9.020080e-08
## SeedFe 4.094238e-04 2.297375e-03 1.217848e-02 2.837963e-01
## SeedK 9.406011e-01 4.299821e-01 3.139584e-01 6.494538e-01
## SeedMg 3.897837e-03 4.768292e-03 5.889909e-03 5.940809e-02
## SeedMn 4.047979e-05 2.490340e-04 7.182917e-05 1.714874e-01
## SeedMo 8.176500e-01 7.169307e-01 5.117554e-01 8.008215e-05
## SeedNi 5.337222e-01 5.559838e-01 7.993433e-02 8.446767e-02
## SeedP 3.087882e-07 1.502895e-04 6.531620e-07 1.167193e-09
## SeedS 9.587861e-02 1.187089e-02 7.239315e-02 2.830739e-01
## SeedZn 7.828563e-04 2.913434e-02 4.502616e-03 2.450244e-01
## SoilAl 1.375716e-01 8.500552e-01 1.891239e-02 6.259340e-01
## SoilB 3.450112e-01 3.425660e-02 7.611436e-01 1.364818e-01
## SoilCa 6.620126e-04 1.735610e-05 4.417078e-03 4.121573e-02
## SoilCo 2.213686e-03 2.614771e-05 5.753587e-01 9.388438e-01
## SoilCu 2.335524e-06 2.143088e-08 1.005682e-03 1.457256e-02
## SoilFe 6.410322e-01 2.720304e-02 7.056848e-01 7.657127e-01
## SoilK 7.756471e-01 1.391241e-02 2.553668e-02 2.154350e-04
## SoilMg 7.354027e-01 1.810496e-02 2.161877e-02 1.431659e-04
## SoilMn 5.261456e-01 1.170235e-01 6.083425e-01 2.532952e-01
## SoilMo 1.891873e-04 1.035476e-02 1.959160e-04 2.797355e-01
## SoilNi 5.998001e-03 5.456727e-04 5.481336e-01 8.116127e-01
## SoilP 1.345236e-02 8.018712e-04 9.839788e-01 1.040900e-01
## SoilS 4.188150e-02 1.989859e-02 4.740344e-01 9.080257e-01
## SoilZn 1.271411e-03 1.630610e-01 2.164110e-04 1.921678e-06
## BinePerPlantAl 4.133077e-04 1.297918e-01 2.449042e-04 1.264894e-10
## BinePerPlantB 1.429556e-02 5.180737e-04 6.774191e-01 9.541677e-02
## BinePerPLantCa 2.344668e-01 2.293260e-02 2.670200e-02 3.575052e-05
## BinePerPlantCo 3.041252e-04 1.793708e-01 4.148621e-02 4.440866e-06
## BinePerPlantCu 7.830593e-05 8.521573e-02 3.241334e-03 4.210676e-02
## BinePerPlantFe 1.415324e-04 4.313216e-04 7.132564e-02 1.076521e-02
## BinePerPlantK 1.129855e-08 1.596254e-03 4.952649e-07 3.249692e-10
## BinePerPlantMg 3.552355e-01 7.475533e-01 8.458095e-01 5.029752e-03
## BinePerPlantMn 8.377413e-01 7.615134e-01 6.116592e-01 4.978976e-04
## BinePerPlantMo 9.464190e-01 1.517234e-02 1.444213e-01 3.588650e-01
## BinePerPlantNi 9.631048e-05 2.553170e-01 7.847432e-04 2.181467e-08
## BinePerPlantP 2.522959e-02 3.306648e-01 9.630546e-01 8.868692e-01
## BinePerPlantSe 3.161693e-03 7.756091e-01 1.948140e-03 1.895213e-03
## BinePerPLantZn 3.604685e-01 1.548045e-01 1.597136e-01 2.146656e-01
## SeedPerPlantAl 8.872012e-05 2.246157e-01 3.371025e-05 1.423231e-07
## SeedPerPlantB 1.301854e-03 2.637029e-01 3.278500e-04 2.427742e-06
## SeedPerPlantCa 8.541959e-01 1.871081e-02 2.261788e-01 5.854044e-03
## SeedPerPlantCo 3.233274e-01 2.182072e-01 3.804030e-01 2.348269e-02
## SeedPerPlantCu 5.093063e-01 4.218341e-02 7.496789e-02 1.753170e-02
## SeedPerPlantFe 4.318822e-01 1.417057e-01 6.731975e-02 1.084351e-03
## SeedPerPlantK 2.731352e-03 5.890199e-01 1.308714e-03 7.791247e-06
## SeedPerPlantMg 9.392419e-02 3.398093e-01 1.856135e-02 4.939876e-04
## SeedPerPlantMn 5.785220e-01 1.017520e-01 2.200079e-01 5.340807e-04
## SeedPerPlantMo 1.125756e-02 9.404803e-01 7.503793e-03 1.763141e-01
## SeedPerPlantNi 4.711458e-02 5.605152e-01 8.478394e-02 3.395610e-02
## SeedPerPlantP 9.169442e-01 3.530645e-03 3.296317e-01 1.206914e-01
## SeedPerPlantS 2.481948e-02 6.185283e-01 6.108861e-03 2.163960e-04
## SeedPerPlantZn 2.773690e-01 3.436887e-01 4.790002e-02 9.869992e-05
## BineSeedPerPlantAl 8.872012e-05 2.246157e-01 3.371025e-05 1.423231e-07
## BineSeedPerPlantB 3.263469e-04 1.272968e-01 1.795451e-04 7.231401e-11
## BineSeedPerPlantCa 3.070014e-02 2.811605e-04 8.926296e-01 3.972360e-02
## BineSeedPerPlantCo 2.281710e-01 2.350589e-02 2.883185e-02 3.755748e-05
## BineSeedPerPlantCu 3.665307e-01 6.354465e-02 5.995334e-02 8.210558e-03
## BineSeedPerPlantFe 3.273362e-01 1.825727e-01 5.092907e-02 9.352691e-04
## BineSeedPerPlantK 3.100492e-05 6.908409e-04 2.347632e-02 1.398154e-03
## BineSeedPerPlantMg 1.305712e-07 1.387313e-02 8.703603e-07 2.034450e-10
## BineSeedPerPlantMo 5.114574e-01 1.358176e-01 2.602101e-01 2.165609e-04
## BineSeedPerPlantNi 4.408479e-01 7.381923e-01 9.578208e-01 5.669227e-05
## BineSeedPerPlantP 5.345792e-01 3.595344e-02 4.417233e-02 8.853291e-01
## BineSeedPerPlantS 8.240660e-01 7.312399e-03 2.217495e-01 5.249271e-02
## BineSeedPerPlantS.1 6.704614e-03 4.830546e-01 3.789503e-01 3.282933e-01
## BineSeedPerPlantZn 2.648363e-01 3.450268e-01 4.508500e-02 9.230749e-05
## BineFe BineK BineMg BineMn
## BineM 9.221922e-08 2.326359e-08 4.518537e-14 1.175390e-02
## SeedM 6.024761e-09 3.147091e-10 1.973531e-09 2.759137e-02
## BineSeedM 1.458851e-09 9.746133e-11 5.629125e-13 1.314599e-02
## SeedN 6.267748e-04 7.027482e-05 1.772338e-12 9.827159e-05
## SeedMOne 4.551625e-05 2.343389e-04 1.752964e-01 3.870323e-01
## NodPerPlant 3.194799e-03 7.112724e-03 3.528923e-01 5.674539e-01
## NodPerPlant.1 8.762090e-01 8.632387e-01 9.334352e-02 7.258543e-02
## Mic 2.551713e-01 1.185888e-02 8.589502e-02 7.287135e-01
## Ves 4.740626e-01 9.053179e-01 3.806603e-01 5.942813e-01
## Arb 4.794507e-02 7.454037e-04 5.765545e-03 8.311810e-01
## pH 4.521026e-02 4.370218e-02 7.632021e-05 2.989945e-15
## NitBine 1.986111e-02 1.876502e-06 3.457526e-12 7.530033e-03
## Nit15 2.192472e-03 5.249169e-06 3.683889e-04 6.629924e-01
## NitPerPlant 6.107498e-06 3.334440e-02 5.529723e-03 3.614579e-01
## Nit15PerPlant 2.869216e-01 7.868120e-02 5.392229e-01 5.626458e-01
## NitSeed 5.900874e-01 5.846227e-01 9.523567e-03 6.118898e-02
## NitSeed15 9.485194e-08 1.368291e-08 2.079643e-05 5.553305e-01
## NitSeedPerPlant 1.781391e-07 2.142893e-08 1.628971e-06 6.128176e-02
## Nit15SeedPerPlant 1.270284e-02 5.345308e-02 1.220930e-01 8.424253e-01
## NitBineSeedPerPlant 4.516772e-08 4.107002e-08 1.363492e-06 6.336978e-02
## Nit15BineSeedPerPlant 1.161032e-02 3.464492e-01 2.884204e-01 6.963739e-01
## BineAl 1.246198e-04 3.887145e-07 3.877547e-18 7.584113e-10
## BineB 1.444891e-03 3.027035e-05 1.749444e-14 3.170877e-07
## BineCa 8.345023e-01 6.268174e-02 3.545332e-05 2.766172e-03
## BineCo 1.377078e-08 1.013286e-11 6.164789e-24 1.441151e-08
## BineCu 7.302735e-10 4.795076e-12 1.790308e-10 3.055816e-01
## BineFe 0.000000e+00 2.864112e-11 3.677070e-10 4.273170e-03
## BineK 2.864112e-11 0.000000e+00 6.481863e-14 2.062962e-03
## BineMg 3.677070e-10 6.481863e-14 0.000000e+00 3.217160e-11
## BineMn 4.273170e-03 2.062962e-03 3.217160e-11 0.000000e+00
## BineMo 7.280205e-01 1.988793e-01 8.103882e-01 1.873193e-03
## BineNi 1.636526e-05 1.103975e-08 3.828713e-20 1.652895e-07
## BineP 3.317444e-14 1.469481e-16 1.127382e-15 3.681859e-02
## BineS 5.565151e-03 1.546844e-05 2.548732e-07 3.578320e-01
## BineZn 5.604910e-13 6.204270e-13 2.008178e-18 6.576800e-10
## SeedAl 2.120746e-03 7.893762e-04 1.897799e-02 6.601528e-01
## SeedB 2.533231e-01 1.102836e-01 8.692937e-01 4.113119e-01
## SeedCo 1.262393e-02 2.454902e-02 1.303804e-02 7.087584e-02
## SeedCu 2.944029e-05 7.753565e-05 1.542280e-05 2.519861e-01
## SeedFe 3.325848e-01 1.161681e-01 7.101444e-03 8.669122e-03
## SeedK 6.541518e-02 3.683973e-01 3.589925e-01 2.697606e-01
## SeedMg 1.063579e-01 1.492458e-01 1.394114e-02 6.121310e-02
## SeedMn 2.348716e-01 9.710999e-02 2.119394e-03 9.651609e-06
## SeedMo 3.891383e-01 4.360620e-01 6.132383e-01 2.050920e-05
## SeedNi 3.602992e-04 2.821418e-02 3.239368e-02 9.164092e-02
## SeedP 1.187150e-04 5.190440e-05 1.054618e-06 1.459449e-01
## SeedS 8.855786e-01 9.177102e-01 4.412070e-01 4.729525e-01
## SeedZn 3.589910e-01 1.483037e-02 3.714085e-03 5.234028e-05
## SoilAl 1.499625e-01 4.321060e-01 2.666624e-03 7.944170e-10
## SoilB 3.447482e-01 4.043263e-01 8.564834e-01 1.262793e-01
## SoilCa 3.020069e-01 5.646892e-01 9.779568e-02 3.101781e-01
## SoilCo 2.588775e-02 2.135523e-01 8.366739e-01 5.179888e-01
## SoilCu 3.967354e-01 2.225466e-01 7.235523e-03 5.808130e-02
## SoilFe 1.485695e-01 8.721483e-02 1.160991e-01 4.189458e-03
## SoilK 1.711900e-08 3.594477e-05 3.570586e-03 8.831211e-01
## SoilMg 1.228045e-08 3.603764e-05 2.961739e-03 8.802406e-01
## SoilMn 2.106978e-01 1.218071e-01 1.427210e-01 3.073916e-03
## SoilMo 3.924539e-01 4.440932e-01 7.109455e-04 2.505887e-08
## SoilNi 4.511440e-02 2.501689e-01 8.262845e-01 3.336486e-01
## SoilP 4.047428e-04 4.908826e-02 7.550828e-01 2.690792e-02
## SoilS 3.425301e-01 3.524777e-01 6.587043e-01 1.130459e-01
## SoilZn 1.720797e-05 4.110674e-02 2.938880e-03 4.886941e-01
## BinePerPlantAl 1.266913e-05 3.783762e-04 3.717573e-05 9.370495e-01
## BinePerPlantB 3.376824e-02 6.775645e-01 8.730626e-01 1.257598e-02
## BinePerPLantCa 6.758848e-08 3.980216e-04 2.666018e-04 4.389061e-01
## BinePerPlantCo 1.586439e-03 9.635781e-03 6.946697e-04 8.863992e-01
## BinePerPlantCu 1.003645e-02 3.580480e-02 3.495161e-06 1.422006e-03
## BinePerPlantFe 2.701892e-01 4.564969e-01 1.808324e-02 7.073897e-01
## BinePerPlantK 1.413458e-05 4.329651e-04 2.605324e-09 5.612154e-02
## BinePerPlantMg 3.208027e-01 8.420480e-01 7.622118e-01 1.551796e-03
## BinePerPlantMn 3.346335e-01 6.607409e-01 4.010136e-01 2.098278e-08
## BinePerPlantMo 3.758711e-02 6.771054e-01 7.371148e-03 9.657714e-07
## BinePerPlantNi 1.466224e-05 2.444221e-04 3.495208e-06 4.247166e-01
## BinePerPlantP 8.064501e-01 2.831022e-01 2.011931e-01 1.739178e-01
## BinePerPlantSe 4.337926e-06 2.357369e-03 4.211413e-07 9.496733e-04
## BinePerPLantZn 4.021786e-01 1.472563e-01 2.455198e-01 1.726206e-04
## SeedPerPlantAl 1.755172e-07 1.411365e-08 1.748233e-08 5.405082e-02
## SeedPerPlantB 2.817619e-05 5.027531e-05 3.374012e-06 2.303427e-01
## SeedPerPlantCa 6.520235e-05 5.704575e-04 2.094335e-02 9.453146e-01
## SeedPerPlantCo 4.250167e-03 2.073124e-03 1.304244e-02 7.056061e-01
## SeedPerPlantCu 2.447516e-04 1.015256e-04 1.007122e-03 1.176802e-01
## SeedPerPlantFe 1.276789e-04 1.676622e-04 3.660273e-03 6.481900e-01
## SeedPerPlantK 1.717417e-05 3.607064e-07 3.130542e-06 1.619542e-01
## SeedPerPlantMg 1.913136e-05 4.032613e-06 1.180726e-04 1.985975e-01
## SeedPerPlantMn 6.668500e-05 2.765031e-04 1.163290e-02 4.807192e-01
## SeedPerPlantMo 9.691162e-04 4.332027e-05 1.403305e-06 4.348066e-06
## SeedPerPlantNi 7.243049e-02 1.305848e-03 4.402521e-03 3.614094e-01
## SeedPerPlantP 8.599489e-04 9.476083e-04 1.231127e-02 2.048761e-01
## SeedPerPlantS 9.228907e-06 4.671072e-07 1.085007e-05 9.095523e-02
## SeedPerPlantZn 1.784650e-05 4.705155e-04 2.457947e-03 8.017307e-01
## BineSeedPerPlantAl 1.755172e-07 1.411365e-08 1.748233e-08 5.405082e-02
## BineSeedPerPlantB 8.200900e-06 2.522790e-04 2.164138e-05 9.887454e-01
## BineSeedPerPlantCa 6.767589e-03 3.010899e-01 7.590763e-01 2.601096e-02
## BineSeedPerPlantCo 7.397125e-08 3.105090e-04 2.446967e-04 4.424642e-01
## BineSeedPerPlantCu 1.389018e-04 6.986960e-05 5.469646e-04 1.333935e-01
## BineSeedPerPlantFe 9.803945e-05 1.455264e-04 1.937817e-03 5.353223e-01
## BineSeedPerPlantK 7.473450e-01 1.271040e-01 2.357877e-03 5.487253e-01
## BineSeedPerPlantMg 1.334664e-06 3.245829e-05 6.262756e-10 5.073131e-02
## BineSeedPerPlantMo 9.739298e-05 7.557141e-04 2.022435e-02 2.687751e-01
## BineSeedPerPlantNi 8.257397e-02 1.848132e-01 9.126974e-01 4.355757e-06
## BineSeedPerPlantP 8.081206e-03 1.361831e-01 2.671792e-04 4.095319e-07
## BineSeedPerPlantS 3.229262e-04 4.422541e-04 5.024164e-03 1.977904e-01
## BineSeedPerPlantS.1 2.824139e-01 6.278937e-01 1.380938e-02 8.176992e-02
## BineSeedPerPlantZn 1.532696e-05 4.409206e-04 2.134015e-03 8.335079e-01
## BineMo BineNi BineP BineS
## BineM 2.020687e-02 2.401936e-10 6.014190e-17 3.344074e-11
## SeedM 5.431431e-01 7.252496e-04 6.516313e-11 5.503420e-04
## BineSeedM 1.584792e-01 1.314402e-06 1.674190e-15 5.801529e-07
## SeedN 4.315838e-01 4.587339e-09 2.763240e-10 3.049420e-06
## SeedMOne 3.421049e-01 2.839071e-01 8.540967e-03 7.443073e-01
## NodPerPlant 9.326035e-02 4.214210e-01 5.109870e-03 5.959311e-01
## NodPerPlant.1 4.352135e-02 2.162981e-02 9.505376e-01 1.881270e-02
## Mic 4.069648e-03 2.942192e-02 8.144034e-04 3.710757e-04
## Ves 1.962753e-01 9.667760e-01 5.834493e-01 8.539190e-01
## Arb 5.310146e-03 4.847155e-03 9.452515e-06 7.519993e-05
## pH 8.574012e-10 6.868705e-02 8.046401e-01 3.184586e-02
## NitBine 4.694737e-05 4.619443e-17 5.392685e-11 2.525804e-18
## Nit15 5.788134e-05 4.315117e-03 2.783780e-06 1.354745e-03
## NitPerPlant 4.188662e-01 1.603484e-01 1.292021e-04 1.608979e-01
## Nit15PerPlant 3.996225e-07 1.624331e-01 4.622355e-01 4.794658e-02
## NitSeed 3.496059e-01 2.020687e-04 1.822729e-01 1.880375e-02
## NitSeed15 9.310516e-01 6.395743e-02 6.457015e-11 4.879032e-02
## NitSeedPerPlant 8.384447e-01 2.213365e-02 6.738350e-08 1.281675e-02
## Nit15SeedPerPlant 2.095519e-01 8.914602e-01 3.931020e-02 4.171883e-01
## NitBineSeedPerPlant 9.197347e-01 2.121353e-02 2.888196e-08 1.269622e-02
## Nit15BineSeedPerPlant 3.654368e-03 6.763146e-01 1.499635e-01 9.485883e-01
## BineAl 2.975740e-01 1.993227e-16 8.914961e-08 1.289829e-07
## BineB 7.095143e-03 1.658796e-21 1.159490e-07 4.880359e-12
## BineCa 2.220306e-06 9.846131e-16 5.546729e-03 1.219427e-11
## BineCo 1.904275e-01 1.673878e-28 3.604469e-15 1.237466e-10
## BineCu 1.448339e-04 2.007164e-10 5.174527e-29 8.626959e-16
## BineFe 7.280205e-01 1.636526e-05 3.317444e-14 5.565151e-03
## BineK 1.988793e-01 1.103975e-08 1.469481e-16 1.546844e-05
## BineMg 8.103882e-01 3.828713e-20 1.127382e-15 2.548732e-07
## BineMn 1.873193e-03 1.652895e-07 3.681859e-02 3.578320e-01
## BineMo 0.000000e+00 8.120504e-03 1.770769e-02 5.354988e-10
## BineNi 8.120504e-03 0.000000e+00 7.902021e-12 1.470678e-13
## BineP 1.770769e-02 7.902021e-12 0.000000e+00 4.339136e-11
## BineS 5.354988e-10 1.470678e-13 4.339136e-11 0.000000e+00
## BineZn 2.294914e-01 1.266922e-08 1.650069e-11 1.151391e-03
## SeedAl 1.002179e-01 8.875944e-01 6.296768e-04 7.857491e-01
## SeedB 8.457680e-02 4.595635e-01 9.232347e-01 1.780002e-02
## SeedCo 7.424260e-01 7.160985e-04 2.708326e-03 6.471811e-02
## SeedCu 9.169214e-02 1.774773e-05 1.105779e-08 1.658026e-05
## SeedFe 9.656285e-01 1.233853e-03 1.704842e-01 1.365265e-01
## SeedK 3.734927e-02 6.705802e-01 1.749748e-01 2.607054e-01
## SeedMg 9.557378e-01 1.252768e-03 1.357515e-02 1.502614e-01
## SeedMn 7.241581e-01 6.865784e-05 1.163936e-01 6.380858e-02
## SeedMo 3.062478e-03 9.826545e-01 2.500430e-03 3.031587e-03
## SeedNi 9.587078e-02 1.508802e-01 5.045227e-03 3.535948e-01
## SeedP 1.364764e-02 5.595933e-08 4.171596e-10 7.544792e-08
## SeedS 8.659920e-01 3.863495e-02 2.812726e-01 2.215185e-01
## SeedZn 6.785609e-01 4.882964e-03 2.048096e-01 2.427267e-01
## SoilAl 3.122874e-06 1.676987e-01 7.891923e-01 4.245806e-01
## SoilB 4.673759e-02 2.940376e-01 2.755943e-01 3.099612e-02
## SoilCa 1.933651e-02 1.709358e-03 3.352056e-01 6.349712e-06
## SoilCo 2.266066e-02 3.605540e-02 6.391479e-01 1.664980e-02
## SoilCu 1.264293e-03 1.938231e-05 1.129044e-01 1.185139e-07
## SoilFe 2.434542e-04 7.021294e-01 8.776888e-01 7.676701e-02
## SoilK 4.349808e-01 3.895050e-01 6.049629e-06 2.605017e-01
## SoilMg 5.182517e-01 3.454414e-01 4.012625e-06 2.262090e-01
## SoilMn 5.776892e-04 8.835371e-01 8.941605e-01 1.096244e-02
## SoilMo 5.084075e-01 1.325188e-03 4.930297e-01 4.422661e-02
## SoilNi 7.929009e-02 7.685897e-02 5.199870e-01 2.389263e-02
## SoilP 7.876819e-01 2.206180e-01 3.167127e-02 2.925743e-01
## SoilS 3.155671e-01 1.893386e-01 9.815474e-01 1.108232e-01
## SoilZn 2.683829e-01 1.469353e-03 2.761823e-05 4.233566e-05
## BinePerPlantAl 3.027543e-02 5.572171e-04 1.755047e-11 1.421906e-06
## BinePerPlantB 2.706902e-01 1.632818e-01 3.216351e-02 8.579881e-01
## BinePerPLantCa 1.941904e-01 2.878091e-01 4.138118e-07 1.431327e-01
## BinePerPlantCo 3.522480e-02 1.171440e-02 1.660356e-06 6.492352e-05
## BinePerPlantCu 6.097324e-01 1.710721e-03 1.023943e-03 1.444302e-02
## BinePerPlantFe 1.182000e-02 6.962675e-03 1.689681e-02 3.862906e-05
## BinePerPlantK 4.244440e-02 1.362720e-07 1.551091e-11 5.067461e-09
## BinePerPlantMg 9.847176e-03 8.147250e-01 2.283735e-02 1.117543e-02
## BinePerPlantMn 1.345809e-05 9.878114e-01 9.630236e-03 1.437553e-03
## BinePerPlantMo 1.171419e-19 9.000185e-01 6.318741e-01 5.947414e-03
## BinePerPlantNi 1.479292e-01 1.378944e-03 9.907523e-10 1.330832e-05
## BinePerPlantP 5.292378e-01 4.994386e-01 9.515273e-01 4.260031e-01
## BinePerPlantSe 2.779367e-02 1.129314e-02 9.041094e-06 3.456969e-01
## BinePerPLantZn 1.348931e-03 9.756335e-01 4.544159e-01 3.627326e-02
## SeedPerPlantAl 1.267545e-01 7.279537e-05 1.513780e-09 4.560130e-05
## SeedPerPlantB 1.156621e-01 7.749076e-04 1.710898e-07 1.824005e-05
## SeedPerPlantCa 5.854808e-01 7.268934e-01 1.808089e-03 3.277028e-01
## SeedPerPlantCo 6.891227e-01 5.568114e-01 8.933232e-03 1.803151e-01
## SeedPerPlantCu 3.125694e-01 4.547411e-01 1.182868e-03 5.307614e-01
## SeedPerPlantFe 7.522639e-01 3.234629e-01 8.430072e-05 8.681171e-02
## SeedPerPlantK 1.374909e-01 3.811185e-03 8.196161e-07 4.384029e-04
## SeedPerPlantMg 6.386047e-01 1.024451e-01 4.095310e-05 3.218308e-02
## SeedPerPlantMn 6.531282e-01 4.894917e-01 8.164096e-05 7.612312e-02
## SeedPerPlantMo 1.810474e-01 1.896631e-02 1.250027e-02 3.773472e-01
## SeedPerPlantNi 1.876744e-01 1.105640e-01 2.204073e-02 5.938696e-03
## SeedPerPlantP 1.092824e-01 9.106808e-01 1.573615e-02 8.245991e-01
## SeedPerPlantS 5.488290e-01 3.344824e-02 9.004761e-06 1.574168e-02
## SeedPerPlantZn 4.930397e-01 1.535788e-01 6.878664e-06 2.128618e-02
## BineSeedPerPlantAl 1.267545e-01 7.279537e-05 1.513780e-09 4.560130e-05
## BineSeedPerPlantB 2.925642e-02 4.258092e-04 7.916192e-12 9.032161e-07
## BineSeedPerPlantCa 2.698725e-01 2.359821e-01 1.033466e-02 9.735297e-01
## BineSeedPerPlantCo 2.211791e-01 2.896010e-01 4.646906e-07 1.357053e-01
## BineSeedPerPlantCu 4.145423e-01 3.611985e-01 4.432417e-04 3.705346e-01
## BineSeedPerPlantFe 7.804948e-01 2.556592e-01 5.366177e-05 7.025539e-02
## BineSeedPerPlantK 8.318227e-03 2.119204e-03 1.898219e-03 4.799233e-06
## BineSeedPerPlantMg 6.279754e-02 9.340717e-07 3.013366e-12 3.033436e-08
## BineSeedPerPlantMo 4.314252e-01 4.934845e-01 4.690240e-05 4.134566e-02
## BineSeedPerPlantNi 2.574741e-05 5.946955e-01 8.657084e-04 3.451162e-04
## BineSeedPerPlantP 4.091438e-13 4.999856e-01 2.111857e-01 1.032443e-01
## BineSeedPerPlantS 1.597229e-01 8.710942e-01 4.842256e-03 8.872006e-01
## BineSeedPerPlantS.1 7.135727e-01 2.072960e-01 1.764761e-01 1.452706e-01
## BineSeedPerPlantZn 5.130764e-01 1.473284e-01 5.937701e-06 2.146551e-02
## BineZn SeedAl SeedB SeedCo
## BineM 2.469025e-07 7.557251e-04 1.823334e-01 3.845294e-01
## SeedM 6.414849e-09 3.538670e-07 5.237074e-01 4.766561e-01
## BineSeedM 2.679559e-09 4.095890e-06 3.223223e-01 9.731401e-01
## SeedN 2.672649e-06 6.296745e-04 5.994818e-01 1.076529e-01
## SeedMOne 4.986753e-03 3.422364e-06 9.247857e-01 2.168663e-02
## NodPerPlant 4.109512e-03 1.227905e-03 2.252335e-02 3.311650e-03
## NodPerPlant.1 9.045765e-01 3.441796e-01 3.699654e-02 4.238586e-02
## Mic 5.019419e-01 6.731865e-02 4.979110e-01 3.970468e-03
## Ves 1.852883e-01 5.270922e-01 1.345914e-01 1.331342e-02
## Arb 1.128449e-01 5.564541e-03 4.591043e-01 4.589101e-03
## pH 2.572334e-05 2.510942e-01 7.053316e-02 5.704089e-01
## NitBine 6.640333e-05 3.727084e-01 8.959012e-02 2.247277e-01
## Nit15 5.610550e-03 1.047446e-02 9.113147e-01 2.469668e-01
## NitPerPlant 1.180256e-02 7.201373e-05 7.947405e-01 6.003671e-01
## Nit15PerPlant 8.991761e-01 2.047705e-01 9.460142e-01 1.292138e-01
## NitSeed 5.547664e-01 5.705057e-02 4.427388e-01 4.571770e-01
## NitSeed15 4.627705e-07 6.204064e-09 3.109441e-01 2.752629e-01
## NitSeedPerPlant 1.472944e-07 1.566388e-07 7.106241e-01 3.977744e-01
## Nit15SeedPerPlant 1.311339e-01 6.459254e-05 4.490306e-02 2.511978e-03
## NitBineSeedPerPlant 1.730757e-07 5.953462e-08 7.063128e-01 4.635172e-01
## Nit15BineSeedPerPlant 2.219694e-01 1.063343e-04 8.693379e-02 5.655439e-02
## BineAl 2.137187e-08 1.570490e-01 3.856580e-01 4.147020e-01
## BineB 1.120864e-05 7.444854e-01 4.623281e-01 2.044802e-02
## BineCa 1.863685e-01 4.437457e-03 1.257888e-01 1.963948e-02
## BineCo 2.165918e-17 2.354566e-01 7.860842e-01 1.496326e-04
## BineCu 3.302256e-08 5.704547e-03 7.555978e-01 1.969454e-02
## BineFe 5.604910e-13 2.120746e-03 2.533231e-01 1.262393e-02
## BineK 6.204270e-13 7.893762e-04 1.102836e-01 2.454902e-02
## BineMg 2.008178e-18 1.897799e-02 8.692937e-01 1.303804e-02
## BineMn 6.576800e-10 6.601528e-01 4.113119e-01 7.087584e-02
## BineMo 2.294914e-01 1.002179e-01 8.457680e-02 7.424260e-01
## BineNi 1.266922e-08 8.875944e-01 4.595635e-01 7.160985e-04
## BineP 1.650069e-11 6.296768e-04 9.232347e-01 2.708326e-03
## BineS 1.151391e-03 7.857491e-01 1.780002e-02 6.471811e-02
## BineZn 0.000000e+00 1.196555e-03 4.401398e-01 2.107155e-02
## SeedAl 1.196555e-03 0.000000e+00 2.973163e-01 5.075154e-01
## SeedB 4.401398e-01 2.973163e-01 0.000000e+00 5.850935e-04
## SeedCo 2.107155e-02 5.075154e-01 5.850935e-04 0.000000e+00
## SeedCu 3.785619e-03 7.008491e-02 3.823959e-01 7.666620e-06
## SeedFe 2.829927e-01 1.794641e-01 4.503673e-02 1.045878e-04
## SeedK 2.387935e-01 2.443810e-01 7.503411e-07 1.304024e-13
## SeedMg 3.713485e-01 8.773267e-01 3.162322e-03 1.358028e-15
## SeedMn 4.592302e-03 4.739187e-01 1.239890e-03 1.085897e-10
## SeedMo 9.965762e-01 4.283819e-02 7.204520e-01 9.323213e-03
## SeedNi 8.475638e-02 5.017843e-03 1.519547e-03 1.716695e-03
## SeedP 2.167945e-03 1.089059e-01 4.525677e-01 2.547375e-06
## SeedS 9.665347e-01 3.272147e-01 2.137096e-03 9.845082e-13
## SeedZn 1.121476e-02 9.119397e-01 2.507491e-03 7.475767e-05
## SoilAl 8.205902e-05 4.666057e-02 6.563593e-01 8.719131e-01
## SoilB 1.434984e-01 6.863746e-01 5.821082e-01 4.302877e-01
## SoilCa 3.143157e-01 2.551913e-01 2.930588e-04 3.962271e-01
## SoilCo 6.368277e-02 1.599300e-03 2.544292e-01 2.874348e-01
## SoilCu 2.705926e-01 3.846477e-01 2.099127e-02 7.005095e-01
## SoilFe 2.067777e-02 4.498072e-04 4.354141e-01 4.478020e-02
## SoilK 2.947581e-05 9.466857e-08 6.738305e-01 6.465188e-01
## SoilMg 2.439854e-05 9.752223e-08 5.885610e-01 6.082782e-01
## SoilMn 3.470286e-02 1.932986e-01 1.051106e-02 1.777067e-01
## SoilMo 6.700172e-05 6.532343e-01 2.224454e-01 8.972827e-01
## SoilNi 1.905646e-01 5.609533e-03 1.588414e-01 4.475892e-01
## SoilP 1.231763e-01 7.736261e-02 5.464502e-02 1.761479e-01
## SoilS 9.429199e-01 4.911842e-01 7.594701e-02 7.991013e-01
## SoilZn 3.060757e-03 5.292695e-01 1.368866e-01 4.947375e-03
## BinePerPlantAl 3.561799e-03 1.842997e-04 2.414988e-01 4.034722e-01
## BinePerPlantB 7.130810e-01 3.472888e-06 3.843861e-01 2.860733e-01
## BinePerPLantCa 3.594074e-05 4.084685e-10 8.257815e-01 5.746169e-01
## BinePerPlantCo 1.121586e-01 5.173905e-04 1.296566e-01 3.094091e-01
## BinePerPlantCu 5.042047e-03 3.014672e-03 1.446127e-01 6.898488e-01
## BinePerPlantFe 9.239162e-01 8.713959e-02 2.540483e-02 5.432274e-01
## BinePerPlantK 1.413809e-04 1.853203e-03 5.601398e-02 5.481606e-01
## BinePerPlantMg 1.927698e-01 4.755521e-02 7.001082e-02 3.224006e-01
## BinePerPlantMn 5.314902e-02 1.991423e-01 8.111234e-02 3.162733e-01
## BinePerPlantMo 2.812171e-04 1.814552e-03 3.077050e-01 4.313901e-01
## BinePerPlantNi 9.514172e-04 8.967233e-06 2.047872e-01 7.590989e-01
## BinePerPlantP 7.952981e-01 1.033247e-01 4.490074e-02 2.117519e-02
## BinePerPlantSe 2.123926e-05 9.617489e-07 7.393246e-01 8.914745e-01
## BinePerPLantZn 1.526182e-04 8.675106e-01 4.214871e-02 2.337580e-01
## SeedPerPlantAl 2.887799e-06 3.498671e-02 1.111367e-01 2.805453e-01
## SeedPerPlantB 1.155939e-04 1.932169e-03 2.683283e-06 5.200071e-02
## SeedPerPlantCa 1.204511e-03 3.203436e-04 4.619590e-02 3.476661e-04
## SeedPerPlantCo 9.178538e-03 9.347222e-04 2.160444e-02 9.388710e-08
## SeedPerPlantCu 3.154685e-05 2.868699e-06 2.900512e-01 1.013837e-03
## SeedPerPlantFe 1.936121e-04 1.964780e-05 8.126866e-02 9.816012e-03
## SeedPerPlantK 1.969321e-05 6.805752e-04 2.187539e-02 5.359048e-03
## SeedPerPlantMg 1.165035e-05 5.831309e-05 1.492480e-01 1.981245e-03
## SeedPerPlantMn 8.874361e-03 9.293823e-05 1.463486e-02 2.949316e-04
## SeedPerPlantMo 3.913335e-06 1.154636e-02 4.957528e-01 4.096198e-02
## SeedPerPlantNi 6.408065e-03 1.615138e-01 1.456365e-02 3.576442e-03
## SeedPerPlantP 3.076241e-04 8.846490e-06 3.464991e-01 3.128096e-04
## SeedPerPlantS 5.160986e-06 7.927828e-05 1.133696e-01 1.040261e-02
## SeedPerPlantZn 2.025749e-03 8.023548e-05 1.334987e-02 5.191764e-03
## BineSeedPerPlantAl 2.887799e-06 3.498671e-02 1.111367e-01 2.805453e-01
## BineSeedPerPlantB 2.486871e-03 1.508562e-04 1.733695e-01 4.792033e-01
## BineSeedPerPlantCa 3.401204e-01 5.708819e-07 2.376608e-01 9.811563e-02
## BineSeedPerPlantCo 3.397826e-05 4.415820e-10 7.261591e-01 4.041787e-01
## BineSeedPerPlantCu 3.266904e-05 1.352514e-06 2.542755e-01 1.123874e-03
## BineSeedPerPlantFe 1.400825e-04 1.354970e-05 7.431827e-02 1.111564e-02
## BineSeedPerPlantK 4.264792e-01 2.734477e-02 1.174487e-02 2.919232e-01
## BineSeedPerPlantMg 1.251578e-05 2.588516e-04 4.640615e-02 8.659314e-01
## BineSeedPerPlantMo 2.405973e-02 6.569529e-05 1.015246e-02 3.817302e-04
## BineSeedPerPlantNi 2.959387e-01 5.535958e-02 4.694457e-02 1.310951e-01
## BineSeedPerPlantP 4.357324e-06 4.223850e-04 8.923779e-01 8.138484e-01
## BineSeedPerPlantS 1.586721e-04 2.587543e-06 3.097854e-01 5.101045e-04
## BineSeedPerPlantS.1 2.746678e-01 7.658130e-03 2.224796e-02 4.038238e-03
## BineSeedPerPlantZn 1.807894e-03 6.838698e-05 1.417213e-02 5.544330e-03
## SeedCu SeedFe SeedK SeedMg
## BineM 3.604773e-08 1.360472e-01 9.574089e-01 2.005184e-01
## SeedM 4.015702e-04 9.153281e-01 3.682458e-01 3.185522e-01
## BineSeedM 3.651736e-06 4.608725e-01 6.054327e-01 9.838024e-01
## SeedN 2.475381e-05 2.016334e-01 2.441536e-01 2.777923e-03
## SeedMOne 3.350110e-01 1.153571e-01 2.174261e-01 6.564451e-04
## NodPerPlant 5.047546e-01 3.225606e-01 2.046552e-03 1.660233e-01
## NodPerPlant.1 2.571847e-01 5.074352e-02 1.094011e-02 1.827329e-01
## Mic 6.509002e-04 3.631630e-01 1.166672e-02 5.222887e-04
## Ves 4.484853e-01 2.977550e-01 4.101899e-02 4.478929e-03
## Arb 2.388347e-05 2.564148e-01 1.231623e-02 1.019972e-03
## pH 8.264537e-01 5.647629e-02 8.772414e-02 2.712490e-01
## NitBine 3.216368e-05 3.819009e-02 2.997323e-01 1.166965e-01
## Nit15 1.094029e-01 6.064964e-01 6.816193e-02 2.187029e-01
## NitPerPlant 3.546417e-04 6.821187e-01 7.454489e-02 2.221970e-01
## Nit15PerPlant 1.880241e-01 4.564312e-01 7.853029e-04 2.471794e-02
## NitSeed 5.391487e-02 3.657904e-02 8.938128e-01 1.808628e-02
## NitSeed15 4.925017e-03 9.020128e-01 2.458021e-01 8.933648e-01
## NitSeedPerPlant 5.303414e-03 7.656567e-01 4.079821e-01 1.490172e-01
## Nit15SeedPerPlant 9.305443e-02 5.072709e-02 6.733156e-02 1.372652e-01
## NitBineSeedPerPlant 2.516937e-03 8.154286e-01 5.639636e-01 2.255063e-01
## Nit15BineSeedPerPlant 5.314445e-02 1.777047e-01 7.701189e-01 6.903290e-01
## BineAl 2.427549e-04 2.568656e-02 5.940232e-01 6.962811e-02
## BineB 2.769234e-05 4.094238e-04 9.406011e-01 3.897837e-03
## BineCa 1.327073e-02 2.297375e-03 4.299821e-01 4.768292e-03
## BineCo 4.787936e-05 1.217848e-02 3.139584e-01 5.889909e-03
## BineCu 9.020080e-08 2.837963e-01 6.494538e-01 5.940809e-02
## BineFe 2.944029e-05 3.325848e-01 6.541518e-02 1.063579e-01
## BineK 7.753565e-05 1.161681e-01 3.683973e-01 1.492458e-01
## BineMg 1.542280e-05 7.101444e-03 3.589925e-01 1.394114e-02
## BineMn 2.519861e-01 8.669122e-03 2.697606e-01 6.121310e-02
## BineMo 9.169214e-02 9.656285e-01 3.734927e-02 9.557378e-01
## BineNi 1.774773e-05 1.233853e-03 6.705802e-01 1.252768e-03
## BineP 1.105779e-08 1.704842e-01 1.749748e-01 1.357515e-02
## BineS 1.658026e-05 1.365265e-01 2.607054e-01 1.502614e-01
## BineZn 3.785619e-03 2.829927e-01 2.387935e-01 3.713485e-01
## SeedAl 7.008491e-02 1.794641e-01 2.443810e-01 8.773267e-01
## SeedB 3.823959e-01 4.503673e-02 7.503411e-07 3.162322e-03
## SeedCo 7.666620e-06 1.045878e-04 1.304024e-13 1.358028e-15
## SeedCu 0.000000e+00 3.083275e-04 3.718298e-06 4.462477e-08
## SeedFe 3.083275e-04 0.000000e+00 2.140965e-03 5.916353e-04
## SeedK 3.718298e-06 2.140965e-03 0.000000e+00 6.925859e-14
## SeedMg 4.462477e-08 5.916353e-04 6.925859e-14 0.000000e+00
## SeedMn 5.246170e-04 9.718006e-07 1.588857e-07 1.740175e-07
## SeedMo 2.064359e-03 3.062971e-01 2.254242e-02 6.108609e-02
## SeedNi 2.524888e-03 2.182800e-02 8.973577e-07 2.785867e-06
## SeedP 7.748425e-34 1.328923e-03 1.411344e-05 2.924250e-09
## SeedS 3.374937e-06 1.631829e-03 9.747168e-15 2.004778e-18
## SeedZn 3.302509e-04 3.215544e-08 1.423051e-05 4.996337e-05
## SoilAl 8.387520e-01 4.652555e-01 4.072561e-01 8.864343e-01
## SoilB 1.292661e-01 5.313499e-01 8.875988e-01 1.550012e-01
## SoilCa 2.572734e-01 1.935996e-01 2.883010e-01 5.987513e-01
## SoilCo 1.665715e-01 1.914146e-03 8.411138e-01 2.090704e-01
## SoilCu 7.084969e-02 2.328456e-01 1.887677e-02 9.862921e-01
## SoilFe 9.678041e-01 6.007674e-01 9.017710e-01 2.791170e-01
## SoilK 1.475087e-02 4.084935e-01 9.173815e-01 3.308164e-01
## SoilMg 1.538963e-02 3.634259e-01 9.796621e-01 3.108238e-01
## SoilMn 6.411341e-01 8.283317e-01 4.507991e-02 1.137530e-01
## SoilMo 7.738634e-01 4.161481e-01 5.847068e-01 6.976795e-01
## SoilNi 2.248032e-01 5.318762e-03 6.925201e-01 4.756502e-01
## SoilP 8.181992e-01 5.720697e-02 1.654236e-01 8.389650e-01
## SoilS 8.434311e-01 3.538943e-01 4.009641e-01 5.500346e-01
## SoilZn 1.657678e-04 8.142357e-02 1.430242e-01 4.170150e-02
## BinePerPlantAl 3.542436e-07 3.533539e-01 4.460501e-01 2.402928e-01
## BinePerPlantB 1.027167e-01 8.013289e-02 4.244742e-01 4.467526e-01
## BinePerPLantCa 3.530175e-04 7.387156e-01 3.701922e-01 6.877820e-01
## BinePerPlantCo 1.142509e-05 5.755628e-01 6.574988e-01 7.750907e-01
## BinePerPlantCu 1.931387e-03 2.966745e-01 8.230345e-01 4.713371e-01
## BinePerPlantFe 1.037079e-02 4.277131e-01 4.208742e-01 3.205610e-01
## BinePerPlantK 1.998262e-07 1.968090e-01 8.908648e-01 1.605210e-01
## BinePerPlantMg 4.237753e-03 6.769362e-01 7.389962e-01 8.786020e-01
## BinePerPlantMn 1.031793e-02 5.120937e-01 2.765717e-01 7.216836e-01
## BinePerPlantMo 6.587809e-01 5.954003e-01 6.281023e-03 1.875886e-01
## BinePerPlantNi 2.015783e-06 5.769711e-01 9.421128e-01 6.463217e-01
## BinePerPlantP 1.914766e-01 6.443906e-01 3.634762e-01 7.003068e-01
## BinePerPlantSe 2.619016e-04 3.037540e-01 9.045076e-02 2.069541e-01
## BinePerPLantZn 3.967638e-02 7.379754e-01 4.289889e-01 4.457655e-01
## SeedPerPlantAl 9.368836e-04 9.344087e-01 4.951417e-02 2.367152e-01
## SeedPerPlantB 2.011903e-02 2.884641e-01 1.407920e-03 4.984999e-02
## SeedPerPlantCa 6.866156e-01 2.550901e-02 9.897997e-04 2.574215e-05
## SeedPerPlantCo 7.223744e-01 1.675162e-02 8.850835e-07 1.240970e-07
## SeedPerPlantCu 3.164207e-01 2.003533e-02 1.029267e-03 5.090230e-05
## SeedPerPlantFe 4.828786e-01 2.823315e-06 1.243187e-02 8.354641e-03
## SeedPerPlantK 2.072440e-01 2.704253e-01 5.464101e-05 1.435585e-03
## SeedPerPlantMg 4.126035e-01 2.234330e-01 9.841378e-04 2.424893e-05
## SeedPerPlantMn 4.453252e-01 9.005887e-03 1.935729e-04 3.352477e-04
## SeedPerPlantMo 7.015590e-01 6.919617e-01 2.725566e-02 1.703632e-02
## SeedPerPlantNi 7.921751e-01 5.591989e-02 8.788748e-05 2.482623e-04
## SeedPerPlantP 1.680011e-01 2.324360e-02 9.725764e-04 5.641655e-06
## SeedPerPlantS 2.848105e-01 3.233062e-01 1.421728e-03 9.791274e-04
## SeedPerPlantZn 2.692109e-01 6.976407e-03 1.200640e-03 3.553318e-03
## BineSeedPerPlantAl 9.368836e-04 9.344087e-01 4.951417e-02 2.367152e-01
## BineSeedPerPlantB 4.387563e-07 3.997120e-01 5.642842e-01 3.013789e-01
## BineSeedPerPlantCa 1.205751e-01 4.228843e-02 9.278507e-01 1.391120e-01
## BineSeedPerPlantCo 6.800191e-04 6.419550e-01 5.577283e-01 4.977980e-01
## BineSeedPerPlantCu 5.126705e-01 2.780388e-02 1.358169e-03 1.077986e-04
## BineSeedPerPlantFe 3.923791e-01 7.969853e-06 1.550425e-02 1.162590e-02
## BineSeedPerPlantK 8.301100e-03 5.835007e-01 1.509161e-01 6.996447e-01
## BineSeedPerPlantMg 4.221584e-06 4.059337e-01 5.413632e-01 7.665758e-01
## BineSeedPerPlantMo 2.621327e-01 1.184635e-02 3.973010e-04 8.674437e-04
## BineSeedPerPlantNi 5.353223e-03 5.509882e-01 1.015957e-01 3.685494e-01
## BineSeedPerPlantP 6.069816e-01 8.784031e-01 2.117622e-01 9.715097e-01
## BineSeedPerPlantS 3.498222e-01 3.379526e-02 1.651471e-03 1.931263e-05
## BineSeedPerPlantS.1 1.347683e-01 9.218634e-01 7.400215e-02 1.797740e-01
## BineSeedPerPlantZn 2.537736e-01 7.691099e-03 1.413211e-03 4.007522e-03
## SeedMn SeedMo SeedNi SeedP
## BineM 1.599300e-01 7.074834e-02 1.285328e-01 3.408959e-09
## SeedM 7.724757e-01 5.913396e-01 4.040683e-01 2.004082e-03
## BineSeedM 6.454524e-01 2.542721e-01 2.328431e-01 7.499343e-06
## SeedN 1.704528e-02 1.500116e-01 6.410339e-03 1.362153e-07
## SeedMOne 2.355726e-03 7.220257e-01 9.722718e-01 8.551305e-01
## NodPerPlant 9.712960e-01 3.464678e-03 2.184643e-02 5.880300e-01
## NodPerPlant.1 3.420003e-01 2.086528e-02 9.486479e-02 3.295960e-01
## Mic 2.314176e-02 5.186742e-03 1.507674e-02 7.208981e-05
## Ves 3.902201e-02 9.514135e-01 4.390595e-02 3.047984e-01
## Arb 1.597108e-02 9.143467e-03 1.831156e-02 2.136000e-06
## pH 2.071711e-02 8.573485e-08 5.907107e-02 9.993502e-01
## NitBine 3.929697e-02 1.672337e-01 8.619852e-01 1.355455e-07
## Nit15 7.363059e-01 2.882744e-01 2.670120e-01 7.543415e-02
## NitPerPlant 7.797488e-01 6.023673e-02 3.519667e-04 1.157500e-03
## Nit15PerPlant 7.175511e-01 7.718181e-01 2.609902e-02 3.605527e-01
## NitSeed 1.432733e-01 2.683105e-01 6.330737e-01 4.811336e-03
## NitSeed15 7.896778e-01 6.428613e-03 1.938690e-02 1.390358e-02
## NitSeedPerPlant 6.271585e-01 6.445901e-01 4.496372e-01 3.004457e-02
## Nit15SeedPerPlant 1.641795e-03 8.159635e-01 8.244606e-01 2.951001e-01
## NitBineSeedPerPlant 6.717629e-01 5.220231e-01 2.750679e-01 1.646230e-02
## Nit15BineSeedPerPlant 1.337151e-02 7.580951e-01 3.034588e-01 2.157067e-01
## BineAl 2.979724e-03 1.690759e-01 2.116171e-01 1.315779e-05
## BineB 4.047979e-05 8.176500e-01 5.337222e-01 3.087882e-07
## BineCa 2.490340e-04 7.169307e-01 5.559838e-01 1.502895e-04
## BineCo 7.182917e-05 5.117554e-01 7.993433e-02 6.531620e-07
## BineCu 1.714874e-01 8.008215e-05 8.446767e-02 1.167193e-09
## BineFe 2.348716e-01 3.891383e-01 3.602992e-04 1.187150e-04
## BineK 9.710999e-02 4.360620e-01 2.821418e-02 5.190440e-05
## BineMg 2.119394e-03 6.132383e-01 3.239368e-02 1.054618e-06
## BineMn 9.651609e-06 2.050920e-05 9.164092e-02 1.459449e-01
## BineMo 7.241581e-01 3.062478e-03 9.587078e-02 1.364764e-02
## BineNi 6.865784e-05 9.826545e-01 1.508802e-01 5.595933e-08
## BineP 1.163936e-01 2.500430e-03 5.045227e-03 4.171596e-10
## BineS 6.380858e-02 3.031587e-03 3.535948e-01 7.544792e-08
## BineZn 4.592302e-03 9.965762e-01 8.475638e-02 2.167945e-03
## SeedAl 4.739187e-01 4.283819e-02 5.017843e-03 1.089059e-01
## SeedB 1.239890e-03 7.204520e-01 1.519547e-03 4.525677e-01
## SeedCo 1.085897e-10 9.323213e-03 1.716695e-03 2.547375e-06
## SeedCu 5.246170e-04 2.064359e-03 2.524888e-03 7.748425e-34
## SeedFe 9.718006e-07 3.062971e-01 2.182800e-02 1.328923e-03
## SeedK 1.588857e-07 2.254242e-02 8.973577e-07 1.411344e-05
## SeedMg 1.740175e-07 6.108609e-02 2.785867e-06 2.924250e-09
## SeedMn 0.000000e+00 8.951030e-01 2.462204e-02 4.858376e-05
## SeedMo 8.951030e-01 0.000000e+00 6.284454e-01 6.232716e-04
## SeedNi 2.462204e-02 6.284454e-01 0.000000e+00 1.957151e-03
## SeedP 4.858376e-05 6.232716e-04 1.957151e-03 0.000000e+00
## SeedS 1.878802e-08 2.146114e-03 2.696338e-03 8.567331e-08
## SeedZn 1.638373e-11 4.142429e-01 1.544672e-02 5.217735e-04
## SoilAl 2.562236e-02 2.241786e-03 3.521252e-01 8.047031e-01
## SoilB 9.990930e-01 1.211743e-02 8.184388e-01 5.319314e-02
## SoilCa 8.989194e-02 6.154718e-02 1.877369e-02 7.741907e-02
## SoilCo 4.673772e-02 9.123974e-01 2.814914e-01 1.262670e-01
## SoilCu 1.732474e-01 6.306276e-01 4.520422e-02 1.447192e-02
## SoilFe 7.230193e-01 1.544619e-02 1.191880e-01 7.319418e-01
## SoilK 2.534136e-01 1.791125e-01 8.929161e-02 7.631286e-02
## SoilMg 2.279475e-01 1.825083e-01 9.528276e-02 7.610202e-02
## SoilMn 2.839990e-01 8.659852e-03 6.214995e-02 5.246064e-01
## SoilMo 2.736174e-04 8.732085e-02 5.299174e-01 3.718991e-01
## SoilNi 7.667289e-02 8.409429e-01 1.324632e-01 2.879944e-01
## SoilP 2.178912e-01 4.825160e-02 3.648291e-02 7.555102e-01
## SoilS 1.457736e-01 3.904859e-01 4.276881e-01 7.380085e-01
## SoilZn 6.087539e-02 2.680606e-03 2.898797e-01 1.358572e-04
## BinePerPlantAl 9.186650e-01 9.853845e-05 2.064662e-02 1.685595e-07
## BinePerPlantB 5.863761e-03 9.305876e-04 1.453944e-02 1.992598e-01
## BinePerPLantCa 4.025668e-01 2.992681e-02 1.253454e-02 3.295186e-03
## BinePerPlantCo 5.162671e-01 2.595201e-02 1.585676e-01 1.690423e-05
## BinePerPlantCu 2.820239e-01 6.150092e-01 1.879338e-01 1.562833e-03
## BinePerPlantFe 5.549710e-01 5.635150e-02 9.209701e-01 1.042808e-03
## BinePerPlantK 2.597131e-01 3.254191e-02 9.014905e-02 1.592404e-08
## BinePerPlantMg 1.168920e-01 3.779098e-05 1.319976e-01 4.162113e-03
## BinePerPlantMn 3.887339e-03 1.608911e-07 6.794396e-01 1.195794e-02
## BinePerPlantMo 2.576566e-01 8.027052e-02 1.728282e-02 8.615642e-01
## BinePerPlantNi 9.724591e-01 1.215473e-02 8.164806e-02 2.531284e-06
## BinePerPlantP 9.884338e-01 4.915169e-01 8.149028e-01 1.754148e-01
## BinePerPlantSe 3.831271e-01 7.593407e-01 1.472818e-04 4.854456e-04
## BinePerPLantZn 5.895266e-02 6.514953e-03 3.438465e-01 2.862759e-02
## SeedPerPlantAl 3.901326e-01 8.819279e-01 9.816069e-01 3.192716e-03
## SeedPerPlantB 4.233107e-02 8.388721e-01 4.166724e-01 3.567489e-02
## SeedPerPlantCa 8.968893e-05 9.283795e-01 3.212742e-01 7.814507e-01
## SeedPerPlantCo 5.368768e-05 2.366003e-01 9.472603e-02 4.392068e-01
## SeedPerPlantCu 5.970978e-03 3.631615e-01 7.877004e-01 2.113912e-01
## SeedPerPlantFe 2.838557e-03 4.661118e-01 4.928002e-01 5.622736e-01
## SeedPerPlantK 2.634276e-02 6.381415e-01 3.153581e-01 3.106554e-01
## SeedPerPlantMg 2.744282e-02 5.558931e-01 3.370788e-01 7.232269e-01
## SeedPerPlantMn 3.081112e-07 6.010565e-01 5.627228e-01 8.102334e-01
## SeedPerPlantMo 9.033381e-01 7.662395e-06 5.398362e-01 9.080006e-01
## SeedPerPlantNi 4.754488e-02 3.354607e-01 3.528381e-06 9.975554e-01
## SeedPerPlantP 1.492612e-03 1.949696e-01 6.434135e-01 4.685961e-02
## SeedPerPlantS 6.168919e-02 3.914093e-01 5.107768e-01 5.462469e-01
## SeedPerPlantZn 1.714987e-04 3.278894e-01 7.704782e-01 3.794618e-01
## BineSeedPerPlantAl 3.901326e-01 8.819279e-01 9.816069e-01 3.192716e-03
## BineSeedPerPlantB 9.956312e-01 1.670464e-04 2.844156e-02 2.347078e-07
## BineSeedPerPlantCa 1.010156e-03 3.277302e-03 4.704537e-02 2.710705e-01
## BineSeedPerPlantCo 2.983087e-01 4.450679e-02 2.212169e-02 5.657790e-03
## BineSeedPerPlantCu 6.770715e-03 4.775007e-01 8.784456e-01 3.693847e-01
## BineSeedPerPlantFe 4.556628e-03 4.953864e-01 5.526572e-01 4.599402e-01
## BineSeedPerPlantK 8.676702e-01 8.891841e-02 7.864143e-01 1.097206e-03
## BineSeedPerPlantMg 6.381869e-01 8.945877e-02 2.169029e-01 1.490735e-06
## BineSeedPerPlantMo 4.241284e-07 2.936145e-01 7.417832e-01 5.312051e-01
## BineSeedPerPlantNi 2.204945e-03 1.827864e-05 7.684955e-01 9.125828e-03
## BineSeedPerPlantP 6.945105e-01 4.335989e-02 4.622198e-01 8.685462e-01
## BineSeedPerPlantS 2.354950e-03 3.055197e-01 7.697907e-01 1.303859e-01
## BineSeedPerPlantS.1 5.704375e-01 3.795642e-01 9.997613e-01 1.646707e-01
## BineSeedPerPlantZn 2.014920e-04 3.291574e-01 8.061584e-01 3.603128e-01
## SeedS SeedZn SoilAl SoilB
## BineM 8.787509e-01 3.008533e-01 1.435347e-01 0.670543319
## SeedM 8.492019e-03 7.459879e-01 1.197649e-01 0.309317221
## BineSeedM 1.376650e-01 5.061749e-01 1.085712e-01 0.676765570
## SeedN 7.156944e-02 7.151021e-02 1.353056e-02 0.394565581
## SeedMOne 3.785236e-06 1.176629e-01 8.626964e-01 0.056706971
## NodPerPlant 4.586943e-01 7.181031e-01 5.689698e-01 0.598785129
## NodPerPlant.1 1.419387e-01 4.293749e-01 8.231362e-02 0.399209296
## Mic 1.742156e-03 6.490672e-03 4.792080e-01 0.281783298
## Ves 9.978160e-03 1.121870e-02 2.063014e-01 0.682264909
## Arb 7.042103e-03 1.325155e-02 8.030134e-01 0.368744408
## pH 9.350007e-01 5.538337e-03 1.461978e-09 0.025644595
## NitBine 3.379911e-01 1.364500e-01 8.161267e-01 0.043941785
## Nit15 4.698752e-03 9.241256e-01 1.997516e-01 0.602802081
## NitPerPlant 7.696553e-01 7.456309e-01 4.425149e-02 0.371600340
## Nit15PerPlant 7.233489e-03 8.096439e-01 2.159575e-03 0.825677856
## NitSeed 8.274410e-03 5.456791e-01 4.487984e-01 0.181854351
## NitSeed15 1.220681e-01 8.927162e-01 6.361652e-01 0.333673540
## NitSeedPerPlant 1.504094e-03 7.288986e-01 1.492066e-01 0.138433241
## Nit15SeedPerPlant 2.891921e-02 1.678510e-01 2.476646e-01 0.593758611
## NitBineSeedPerPlant 3.487351e-03 7.180110e-01 1.146415e-01 0.136439543
## Nit15BineSeedPerPlant 4.187950e-01 2.856947e-01 3.196188e-02 0.714829728
## BineAl 7.604491e-01 7.447502e-03 1.079252e-03 0.774628028
## BineB 9.587861e-02 7.828563e-04 1.375716e-01 0.345011229
## BineCa 1.187089e-02 2.913434e-02 8.500552e-01 0.034256597
## BineCo 7.239315e-02 4.502616e-03 1.891239e-02 0.761143632
## BineCu 2.830739e-01 2.450244e-01 6.259340e-01 0.136481814
## BineFe 8.855786e-01 3.589910e-01 1.499625e-01 0.344748201
## BineK 9.177102e-01 1.483037e-02 4.321060e-01 0.404326306
## BineMg 4.412070e-01 3.714085e-03 2.666624e-03 0.856483442
## BineMn 4.729525e-01 5.234028e-05 7.944170e-10 0.126279308
## BineMo 8.659920e-01 6.785609e-01 3.122874e-06 0.046737589
## BineNi 3.863495e-02 4.882964e-03 1.676987e-01 0.294037644
## BineP 2.812726e-01 2.048096e-01 7.891923e-01 0.275594272
## BineS 2.215185e-01 2.427267e-01 4.245806e-01 0.030996118
## BineZn 9.665347e-01 1.121476e-02 8.205902e-05 0.143498352
## SeedAl 3.272147e-01 9.119397e-01 4.666057e-02 0.686374622
## SeedB 2.137096e-03 2.507491e-03 6.563593e-01 0.582108234
## SeedCo 9.845082e-13 7.475767e-05 8.719131e-01 0.430287743
## SeedCu 3.374937e-06 3.302509e-04 8.387520e-01 0.129266084
## SeedFe 1.631829e-03 3.215544e-08 4.652555e-01 0.531349902
## SeedK 9.747168e-15 1.423051e-05 4.072561e-01 0.887598833
## SeedMg 2.004778e-18 4.996337e-05 8.864343e-01 0.155001208
## SeedMn 1.878802e-08 1.638373e-11 2.562236e-02 0.999092959
## SeedMo 2.146114e-03 4.142429e-01 2.241786e-03 0.012117434
## SeedNi 2.696338e-03 1.544672e-02 3.521252e-01 0.818438843
## SeedP 8.567331e-08 5.217735e-04 8.047031e-01 0.053193139
## SeedS 0.000000e+00 8.522280e-05 9.345247e-01 0.034569040
## SeedZn 8.522280e-05 0.000000e+00 3.270703e-02 0.856647723
## SoilAl 9.345247e-01 3.270703e-02 0.000000e+00 0.037060033
## SoilB 3.456904e-02 8.566477e-01 3.706003e-02 0.000000000
## SoilCa 1.591141e-01 4.229227e-01 6.094209e-01 0.678441023
## SoilCo 1.078963e-01 3.760210e-02 9.325897e-01 0.004322346
## SoilCu 7.599643e-01 1.147310e-01 3.148976e-01 0.001224167
## SoilFe 2.948042e-01 2.441053e-01 5.546177e-05 0.833143454
## SoilK 5.660699e-02 2.685102e-01 2.220753e-01 0.009749024
## SoilMg 5.018067e-02 2.330192e-01 2.440394e-01 0.006958079
## SoilMn 9.041918e-01 3.281903e-01 3.855450e-01 0.022580280
## SoilMo 7.827164e-01 4.050487e-03 2.141999e-08 0.214678354
## SoilNi 3.096928e-01 1.364844e-02 4.441481e-01 0.025975822
## SoilP 5.763736e-01 1.850406e-02 2.932142e-02 0.035830387
## SoilS 5.665429e-01 4.018146e-01 4.366935e-02 0.173215271
## SoilZn 5.279974e-02 1.097659e-01 4.564931e-01 0.463109677
## BinePerPlantAl 4.958186e-01 9.844593e-01 9.497619e-01 0.326926129
## BinePerPlantB 5.998220e-01 5.146090e-03 7.121336e-01 0.776199759
## BinePerPLantCa 1.880766e-01 7.091551e-01 3.951675e-02 0.279666058
## BinePerPlantCo 5.666565e-01 6.575901e-01 7.639847e-01 0.413362064
## BinePerPlantCu 7.084909e-01 5.349409e-01 1.194555e-03 0.464902716
## BinePerPlantFe 4.945338e-01 6.663805e-01 6.084138e-01 0.085149739
## BinePerPlantK 6.008762e-01 6.965576e-01 1.294249e-01 0.705824886
## BinePerPlantMg 6.921506e-01 7.353806e-02 1.536861e-01 0.071301677
## BinePerPlantMn 9.454107e-01 7.353937e-03 8.600333e-05 0.009572030
## BinePerPlantMo 4.384726e-01 3.854585e-01 2.068071e-09 0.044223579
## BinePerPlantNi 6.542600e-01 9.933017e-01 2.340990e-01 0.763611566
## BinePerPlantP 5.442269e-01 8.859570e-01 8.843085e-03 0.572436878
## BinePerPlantSe 9.869147e-01 4.445724e-01 4.522679e-04 0.250431143
## BinePerPLantZn 5.023250e-01 6.193932e-02 8.120228e-03 0.008516189
## SeedPerPlantAl 6.453515e-03 7.432806e-01 3.292979e-01 0.692310842
## SeedPerPlantB 1.027631e-04 8.709963e-02 5.120519e-01 0.383257859
## SeedPerPlantCa 6.172342e-08 1.497571e-02 4.643571e-01 0.209761246
## SeedPerPlantCo 1.399013e-12 7.110754e-03 5.040811e-01 0.194287115
## SeedPerPlantCu 5.429793e-10 4.948459e-02 1.228372e-01 0.050078188
## SeedPerPlantFe 2.562355e-05 5.977412e-03 5.550779e-01 0.198600109
## SeedPerPlantK 1.093505e-07 1.270693e-01 4.870793e-01 0.398889623
## SeedPerPlantMg 1.346803e-08 1.839536e-01 1.846449e-01 0.150135333
## SeedPerPlantMn 5.300205e-08 5.532734e-04 8.157513e-01 0.526154689
## SeedPerPlantMo 6.285093e-06 3.814762e-01 1.172623e-03 0.010329974
## SeedPerPlantNi 6.371348e-06 1.589751e-01 5.121059e-01 0.439148421
## SeedPerPlantP 7.551073e-12 4.508280e-02 1.332130e-01 0.024473541
## SeedPerPlantS 1.493077e-08 3.071728e-01 2.614233e-01 0.119636914
## SeedPerPlantZn 5.589743e-06 1.565996e-05 9.314406e-01 0.487419542
## BineSeedPerPlantAl 6.453515e-03 7.432806e-01 3.292979e-01 0.692310842
## BineSeedPerPlantB 6.400730e-01 9.146440e-01 9.241694e-01 0.366812532
## BineSeedPerPlantCa 1.486504e-01 2.431788e-03 6.319136e-01 0.993867684
## BineSeedPerPlantCo 1.024790e-01 6.030710e-01 4.323907e-02 0.262570526
## BineSeedPerPlantCu 2.046747e-09 5.317649e-02 1.297608e-01 0.067647642
## BineSeedPerPlantFe 3.885117e-05 8.352311e-03 4.512661e-01 0.195112964
## BineSeedPerPlantK 8.406852e-01 8.919896e-01 5.454025e-01 0.144440724
## BineSeedPerPlantMg 4.828206e-01 9.745207e-01 1.048645e-01 0.996985714
## BineSeedPerPlantMo 6.984874e-07 4.186992e-04 6.718352e-01 0.734023746
## BineSeedPerPlantNi 3.129044e-01 9.422482e-03 9.653250e-04 0.034628873
## BineSeedPerPlantP 4.734489e-01 7.360652e-01 2.117347e-09 0.027479114
## BineSeedPerPlantS 7.546150e-11 5.483926e-02 1.217436e-01 0.033370807
## BineSeedPerPlantS.1 3.234991e-02 6.547699e-01 7.361112e-03 0.323525964
## BineSeedPerPlantZn 6.598027e-06 1.918741e-05 8.990283e-01 0.481319917
## SoilCa SoilCo SoilCu SoilFe
## BineM 2.963318e-02 2.300933e-01 1.410986e-03 6.811221e-01
## SeedM 8.377317e-01 3.477471e-01 1.688090e-01 3.627767e-02
## BineSeedM 3.959852e-01 9.831273e-01 2.369009e-02 1.504967e-01
## SeedN 6.723663e-03 3.812530e-01 4.311786e-03 2.005809e-01
## SeedMOne 1.222979e-03 2.450010e-03 1.011099e-01 2.937610e-02
## NodPerPlant 9.294957e-02 3.036141e-05 1.879477e-04 5.718002e-01
## NodPerPlant.1 6.077379e-02 1.481222e-03 2.960524e-04 9.612897e-01
## Mic 6.340649e-01 2.870553e-01 6.811619e-01 8.562705e-01
## Ves 2.297667e-01 4.678691e-01 2.238593e-01 4.943105e-01
## Arb 5.255699e-01 3.731124e-01 5.560720e-01 9.749811e-01
## pH 2.941081e-01 1.471802e-01 4.563705e-01 8.225832e-05
## NitBine 3.020725e-04 6.464203e-02 3.304700e-07 7.796976e-01
## Nit15 4.971269e-01 8.135614e-01 1.217540e-01 8.250728e-01
## NitPerPlant 9.810376e-01 4.712441e-01 9.692018e-01 7.039149e-01
## Nit15PerPlant 8.868443e-01 7.727013e-01 7.651022e-02 2.389926e-01
## NitSeed 4.153288e-02 6.962251e-01 1.098642e-01 8.549230e-01
## NitSeed15 2.134241e-01 7.002176e-02 3.963675e-01 4.038940e-01
## NitSeedPerPlant 4.326253e-01 3.135096e-01 3.955366e-01 3.833493e-02
## Nit15SeedPerPlant 3.180532e-01 4.793910e-01 3.361183e-01 6.049728e-03
## NitBineSeedPerPlant 4.639196e-01 3.883451e-01 4.235896e-01 4.757411e-02
## Nit15BineSeedPerPlant 4.313949e-01 4.787265e-01 8.908524e-01 5.359489e-03
## BineAl 4.011186e-02 1.532129e-01 6.642762e-05 1.213426e-01
## BineB 6.620126e-04 2.213686e-03 2.335524e-06 6.410322e-01
## BineCa 1.735610e-05 2.614771e-05 2.143088e-08 2.720304e-02
## BineCo 4.417078e-03 5.753587e-01 1.005682e-03 7.056848e-01
## BineCu 4.121573e-02 9.388438e-01 1.457256e-02 7.657127e-01
## BineFe 3.020069e-01 2.588775e-02 3.967354e-01 1.485695e-01
## BineK 5.646892e-01 2.135523e-01 2.225466e-01 8.721483e-02
## BineMg 9.779568e-02 8.366739e-01 7.235523e-03 1.160991e-01
## BineMn 3.101781e-01 5.179888e-01 5.808130e-02 4.189458e-03
## BineMo 1.933651e-02 2.266066e-02 1.264293e-03 2.434542e-04
## BineNi 1.709358e-03 3.605540e-02 1.938231e-05 7.021294e-01
## BineP 3.352056e-01 6.391479e-01 1.129044e-01 8.776888e-01
## BineS 6.349712e-06 1.664980e-02 1.185139e-07 7.676701e-02
## BineZn 3.143157e-01 6.368277e-02 2.705926e-01 2.067777e-02
## SeedAl 2.551913e-01 1.599300e-03 3.846477e-01 4.498072e-04
## SeedB 2.930588e-04 2.544292e-01 2.099127e-02 4.354141e-01
## SeedCo 3.962271e-01 2.874348e-01 7.005095e-01 4.478020e-02
## SeedCu 2.572734e-01 1.665715e-01 7.084969e-02 9.678041e-01
## SeedFe 1.935996e-01 1.914146e-03 2.328456e-01 6.007674e-01
## SeedK 2.883010e-01 8.411138e-01 1.887677e-02 9.017710e-01
## SeedMg 5.987513e-01 2.090704e-01 9.862921e-01 2.791170e-01
## SeedMn 8.989194e-02 4.673772e-02 1.732474e-01 7.230193e-01
## SeedMo 6.154718e-02 9.123974e-01 6.306276e-01 1.544619e-02
## SeedNi 1.877369e-02 2.814914e-01 4.520422e-02 1.191880e-01
## SeedP 7.741907e-02 1.262670e-01 1.447192e-02 7.319418e-01
## SeedS 1.591141e-01 1.078963e-01 7.599643e-01 2.948042e-01
## SeedZn 4.229227e-01 3.760210e-02 1.147310e-01 2.441053e-01
## SoilAl 6.094209e-01 9.325897e-01 3.148976e-01 5.546177e-05
## SoilB 6.784410e-01 4.322346e-03 1.224167e-03 8.331435e-01
## SoilCa 0.000000e+00 2.151466e-03 2.234896e-07 3.656974e-02
## SoilCo 2.151466e-03 0.000000e+00 1.161474e-07 1.059403e-02
## SoilCu 2.234896e-07 1.161474e-07 0.000000e+00 4.823911e-01
## SoilFe 3.656974e-02 1.059403e-02 4.823911e-01 0.000000e+00
## SoilK 7.664090e-02 1.139313e-05 1.355435e-02 2.774073e-02
## SoilMg 8.993112e-02 9.458658e-06 1.306327e-02 3.288138e-02
## SoilMn 3.838821e-03 1.927048e-07 4.206787e-04 3.332985e-02
## SoilMo 7.219054e-06 7.928185e-02 1.074463e-04 1.966466e-02
## SoilNi 5.452483e-04 5.800346e-34 1.472364e-08 2.608546e-02
## SoilP 1.514160e-04 1.386519e-10 3.323238e-10 6.743397e-01
## SoilS 7.323750e-03 8.449411e-09 5.256973e-05 3.579940e-01
## SoilZn 9.880835e-03 4.656032e-01 8.244038e-01 4.095640e-01
## BinePerPlantAl 7.544700e-02 2.636050e-01 5.441274e-02 7.036308e-01
## BinePerPlantB 5.018788e-01 2.124998e-01 2.226651e-01 4.877773e-01
## BinePerPLantCa 5.676772e-01 2.079446e-01 7.038973e-01 4.837084e-02
## BinePerPlantCo 3.286648e-01 8.729999e-02 3.533551e-02 9.707889e-01
## BinePerPlantCu 2.174960e-01 1.176930e-01 4.361013e-02 2.694191e-01
## BinePerPlantFe 4.259017e-04 2.812061e-04 9.930217e-06 3.125170e-01
## BinePerPlantK 8.403825e-03 9.481221e-02 2.074349e-03 9.931948e-01
## BinePerPlantMg 2.796240e-01 3.269246e-02 1.599270e-01 1.020739e-01
## BinePerPlantMn 5.587548e-01 2.070226e-01 2.848893e-01 9.080759e-03
## BinePerPlantMo 6.807892e-01 3.417335e-02 7.295500e-02 1.244282e-04
## BinePerPlantNi 2.138355e-01 3.859753e-01 4.575508e-02 6.382395e-01
## BinePerPlantP 7.123758e-02 7.084629e-03 2.041945e-02 5.776900e-01
## BinePerPlantSe 8.573078e-01 7.923562e-01 8.764964e-01 2.478921e-02
## BinePerPLantZn 4.380685e-01 7.917838e-04 1.070195e-01 1.960072e-02
## SeedPerPlantAl 9.648664e-01 8.207298e-01 3.791767e-02 1.497751e-01
## SeedPerPlantB 2.270939e-01 8.058063e-01 3.621310e-02 3.438319e-01
## SeedPerPlantCa 1.761021e-01 7.748473e-02 9.503707e-01 3.012578e-02
## SeedPerPlantCo 2.064588e-01 1.677927e-01 4.177084e-01 5.896714e-02
## SeedPerPlantCu 1.131073e-01 2.149497e-02 8.117773e-01 1.589171e-02
## SeedPerPlantFe 2.761252e-01 1.705510e-02 7.419339e-01 1.220919e-01
## SeedPerPlantK 8.692733e-01 4.317672e-01 5.845060e-02 1.447306e-01
## SeedPerPlantMg 3.901152e-01 2.133235e-01 3.419636e-01 3.437604e-02
## SeedPerPlantMn 2.024391e-01 5.529394e-02 8.481657e-01 2.626958e-01
## SeedPerPlantMo 1.794620e-01 3.848865e-01 4.953337e-01 1.424408e-03
## SeedPerPlantNi 6.446749e-01 8.338293e-01 3.912910e-02 3.129561e-01
## SeedPerPlantP 4.069045e-02 1.581957e-02 4.479354e-01 9.509208e-03
## SeedPerPlantS 4.083669e-01 2.311428e-01 2.868660e-01 6.050785e-02
## SeedPerPlantZn 5.730633e-01 5.141177e-02 6.883852e-01 2.673985e-01
## BineSeedPerPlantAl 9.648664e-01 8.207298e-01 3.791767e-02 1.497751e-01
## BineSeedPerPlantB 7.441445e-02 2.853522e-01 4.859517e-02 7.499199e-01
## BineSeedPerPlantCa 3.811668e-01 1.390710e-01 2.772300e-01 2.917553e-01
## BineSeedPerPlantCo 5.303927e-01 1.946474e-01 7.521237e-01 4.366042e-02
## BineSeedPerPlantCu 1.458579e-01 3.729088e-02 9.429770e-01 2.005554e-02
## BineSeedPerPlantFe 3.217586e-01 2.582205e-02 6.639667e-01 1.160811e-01
## BineSeedPerPlantK 1.146320e-03 1.261192e-03 6.050844e-06 4.912169e-01
## BineSeedPerPlantMg 4.019169e-02 2.508270e-01 4.010555e-03 6.253663e-01
## BineSeedPerPlantMo 2.974059e-01 1.364273e-01 7.028828e-01 4.129834e-01
## BineSeedPerPlantNi 7.556530e-01 2.618591e-01 2.023536e-01 4.575790e-02
## BineSeedPerPlantP 8.171052e-01 3.595659e-02 3.252840e-01 4.688046e-05
## BineSeedPerPlantS 6.462710e-02 2.572616e-02 5.793343e-01 1.146148e-02
## BineSeedPerPlantS.1 1.857784e-01 4.929595e-02 1.664041e-02 2.806303e-01
## BineSeedPerPlantZn 5.740379e-01 5.257763e-02 6.888830e-01 2.586698e-01
## SoilK SoilMg SoilMn SoilMo
## BineM 2.855802e-05 1.961378e-05 1.660407e-01 2.247808e-02
## SeedM 4.027763e-10 2.799423e-10 7.538478e-01 2.521754e-01
## BineSeedM 1.260529e-08 7.956769e-09 6.625963e-01 8.486080e-02
## SeedN 2.860483e-02 2.387634e-02 8.118906e-01 1.279713e-03
## SeedMOne 2.958565e-11 3.962234e-11 5.458818e-01 9.335008e-02
## NodPerPlant 7.640260e-03 8.884729e-03 4.454533e-04 4.100448e-02
## NodPerPlant.1 9.687143e-01 9.727853e-01 1.446053e-02 3.531213e-03
## Mic 3.894700e-01 3.878507e-01 9.087793e-01 8.793174e-01
## Ves 3.417522e-01 3.308912e-01 2.852540e-02 3.689511e-01
## Arb 9.548662e-02 9.520902e-02 8.844033e-01 6.775337e-01
## pH 3.313528e-01 3.703416e-01 1.232476e-05 3.230612e-03
## NitBine 2.342918e-01 2.000535e-01 2.891089e-01 2.726495e-02
## Nit15 4.302668e-03 2.473677e-03 4.310201e-01 7.751516e-01
## NitPerPlant 1.895262e-05 1.924449e-05 1.365776e-01 2.323489e-01
## Nit15PerPlant 3.028009e-01 3.810417e-01 8.223261e-01 6.433909e-01
## NitSeed 3.294541e-01 3.530141e-01 7.840805e-01 2.028566e-01
## NitSeed15 4.996040e-10 4.408498e-10 3.610059e-01 4.776692e-01
## NitSeedPerPlant 1.441326e-09 1.171403e-09 5.872871e-01 3.683674e-01
## Nit15SeedPerPlant 7.220997e-05 7.332599e-05 5.282112e-01 9.757961e-01
## NitBineSeedPerPlant 4.379350e-10 3.574409e-10 7.315656e-01 3.286197e-01
## Nit15BineSeedPerPlant 1.801262e-04 2.403943e-04 6.557993e-01 8.388197e-01
## BineAl 6.995394e-02 6.125387e-02 8.886249e-01 6.931141e-06
## BineB 7.756471e-01 7.354027e-01 5.261456e-01 1.891873e-04
## BineCa 1.391241e-02 1.810496e-02 1.170235e-01 1.035476e-02
## BineCo 2.553668e-02 2.161877e-02 6.083425e-01 1.959160e-04
## BineCu 2.154350e-04 1.431659e-04 2.532952e-01 2.797355e-01
## BineFe 1.711900e-08 1.228045e-08 2.106978e-01 3.924539e-01
## BineK 3.594477e-05 3.603764e-05 1.218071e-01 4.440932e-01
## BineMg 3.570586e-03 2.961739e-03 1.427210e-01 7.109455e-04
## BineMn 8.831211e-01 8.802406e-01 3.073916e-03 2.505887e-08
## BineMo 4.349808e-01 5.182517e-01 5.776892e-04 5.084075e-01
## BineNi 3.895050e-01 3.454414e-01 8.835371e-01 1.325188e-03
## BineP 6.049629e-06 4.012625e-06 8.941605e-01 4.930297e-01
## BineS 2.605017e-01 2.262090e-01 1.096244e-02 4.422661e-02
## BineZn 2.947581e-05 2.439854e-05 3.470286e-02 6.700172e-05
## SeedAl 9.466857e-08 9.752223e-08 1.932986e-01 6.532343e-01
## SeedB 6.738305e-01 5.885610e-01 1.051106e-02 2.224454e-01
## SeedCo 6.465188e-01 6.082782e-01 1.777067e-01 8.972827e-01
## SeedCu 1.475087e-02 1.538963e-02 6.411341e-01 7.738634e-01
## SeedFe 4.084935e-01 3.634259e-01 8.283317e-01 4.161481e-01
## SeedK 9.173815e-01 9.796621e-01 4.507991e-02 5.847068e-01
## SeedMg 3.308164e-01 3.108238e-01 1.137530e-01 6.976795e-01
## SeedMn 2.534136e-01 2.279475e-01 2.839990e-01 2.736174e-04
## SeedMo 1.791125e-01 1.825083e-01 8.659852e-03 8.732085e-02
## SeedNi 8.929161e-02 9.528276e-02 6.214995e-02 5.299174e-01
## SeedP 7.631286e-02 7.610202e-02 5.246064e-01 3.718991e-01
## SeedS 5.660699e-02 5.018067e-02 9.041918e-01 7.827164e-01
## SeedZn 2.685102e-01 2.330192e-01 3.281903e-01 4.050487e-03
## SoilAl 2.220753e-01 2.440394e-01 3.855450e-01 2.141999e-08
## SoilB 9.749024e-03 6.958079e-03 2.258028e-02 2.146784e-01
## SoilCa 7.664090e-02 8.993112e-02 3.838821e-03 7.219054e-06
## SoilCo 1.139313e-05 9.458658e-06 1.927048e-07 7.928185e-02
## SoilCu 1.355435e-02 1.306327e-02 4.206787e-04 1.074463e-04
## SoilFe 2.774073e-02 3.288138e-02 3.332985e-02 1.966466e-02
## SoilK 0.000000e+00 1.106603e-73 3.333013e-01 5.878051e-01
## SoilMg 1.106603e-73 0.000000e+00 3.471651e-01 6.306124e-01
## SoilMn 3.333013e-01 3.471651e-01 0.000000e+00 2.334754e-01
## SoilMo 5.878051e-01 6.306124e-01 2.334754e-01 0.000000e+00
## SoilNi 5.854660e-05 4.867905e-05 1.149908e-06 1.541065e-02
## SoilP 5.459314e-05 4.698321e-05 2.064063e-03 8.170713e-05
## SoilS 2.105304e-02 1.866949e-02 8.232320e-04 2.850390e-03
## SoilZn 2.470922e-03 2.357411e-03 6.154464e-02 7.583874e-02
## BinePerPlantAl 2.763922e-05 2.126055e-05 1.153787e-02 6.830144e-01
## BinePerPlantB 1.334657e-05 1.312088e-05 7.280157e-02 1.938804e-01
## BinePerPLantCa 6.677831e-12 7.285142e-12 6.654913e-01 4.668278e-01
## BinePerPlantCo 2.124079e-04 1.737487e-04 7.014770e-03 6.003520e-01
## BinePerPlantCu 4.578495e-03 4.321508e-03 5.564027e-01 5.692499e-03
## BinePerPlantFe 9.607337e-01 9.312277e-01 7.057176e-03 6.817302e-02
## BinePerPlantK 2.269995e-04 1.602072e-04 3.369025e-02 2.043598e-02
## BinePerPlantMg 3.069268e-02 2.877944e-02 1.364416e-06 4.079088e-01
## BinePerPlantMn 2.806887e-02 2.558310e-02 4.658674e-07 3.436452e-03
## BinePerPlantMo 4.403148e-02 5.453954e-02 8.332712e-04 1.901400e-02
## BinePerPlantNi 1.982082e-06 1.532883e-06 4.842945e-02 2.038690e-01
## BinePerPlantP 3.857660e-01 3.839844e-01 1.454362e-02 4.506685e-03
## BinePerPlantSe 5.813851e-06 5.359113e-06 7.396460e-01 5.100358e-02
## BinePerPLantZn 9.274773e-01 9.108432e-01 2.583212e-06 4.141785e-02
## SeedPerPlantAl 9.636181e-07 7.110604e-07 5.045258e-01 3.289905e-01
## SeedPerPlantB 8.570911e-07 4.292263e-07 3.651582e-01 2.636407e-01
## SeedPerPlantCa 8.420827e-09 5.454363e-09 4.947703e-01 9.344482e-01
## SeedPerPlantCo 3.789033e-06 2.461652e-06 6.955697e-01 7.523767e-01
## SeedPerPlantCu 1.540637e-07 1.121845e-07 3.281002e-01 4.793100e-01
## SeedPerPlantFe 4.853850e-07 2.842064e-07 4.681631e-01 8.052530e-01
## SeedPerPlantK 3.415175e-07 2.114142e-07 7.615711e-01 3.988761e-01
## SeedPerPlantMg 3.536386e-08 2.347870e-08 8.631999e-01 3.287096e-01
## SeedPerPlantMn 9.087199e-09 5.002230e-09 5.673723e-01 2.361152e-01
## SeedPerPlantMo 6.040455e-04 5.220128e-04 1.778064e-02 3.675293e-02
## SeedPerPlantNi 1.018291e-02 8.772709e-03 8.006168e-01 1.906192e-01
## SeedPerPlantP 1.689954e-07 1.348841e-07 2.765993e-01 7.385452e-01
## SeedPerPlantS 7.460505e-08 5.043355e-08 7.104043e-01 4.002263e-01
## SeedPerPlantZn 2.218336e-09 1.062057e-09 6.471341e-01 6.518767e-01
## BineSeedPerPlantAl 9.636181e-07 7.110604e-07 5.045258e-01 3.289905e-01
## BineSeedPerPlantB 1.509560e-05 1.123817e-05 1.273955e-02 6.502633e-01
## BineSeedPerPlantCa 2.263159e-07 2.065247e-07 7.909585e-02 2.350056e-01
## BineSeedPerPlantCo 3.673807e-12 3.790501e-12 6.598642e-01 4.718001e-01
## BineSeedPerPlantCu 6.169795e-08 4.345781e-08 4.576147e-01 4.687237e-01
## BineSeedPerPlantFe 3.528551e-07 2.057985e-07 5.005465e-01 6.940688e-01
## BineSeedPerPlantK 3.878716e-01 3.627707e-01 9.936221e-03 6.218343e-02
## BineSeedPerPlantMg 6.704839e-06 4.217796e-06 6.151988e-02 2.561521e-02
## BineSeedPerPlantMo 8.030265e-09 4.415346e-09 2.391416e-01 2.163699e-01
## BineSeedPerPlantNi 1.878482e-03 1.590048e-03 3.885563e-06 1.045452e-02
## BineSeedPerPlantP 4.181385e-03 5.263484e-03 2.087294e-03 6.359925e-03
## BineSeedPerPlantS 3.523809e-08 2.701741e-08 3.837948e-01 6.659117e-01
## BineSeedPerPlantS.1 2.031719e-02 1.930212e-02 4.293977e-02 5.433981e-03
## BineSeedPerPlantZn 1.856402e-09 8.855625e-10 6.522606e-01 6.713565e-01
## SoilNi SoilP SoilS SoilZn
## BineM 2.567026e-01 6.696890e-01 1.321809e-01 2.564993e-04
## SeedM 5.083392e-01 2.638312e-01 6.314801e-01 6.560220e-02
## BineSeedM 9.082374e-01 6.338503e-01 3.316208e-01 5.914686e-03
## SeedN 5.553840e-01 1.786865e-01 1.222232e-01 1.431195e-02
## SeedMOne 1.562049e-02 6.154510e-04 1.966330e-01 7.769142e-01
## NodPerPlant 1.152114e-04 5.217284e-08 9.675884e-03 2.062840e-01
## NodPerPlant.1 9.126317e-04 9.533578e-05 1.374216e-02 7.478985e-01
## Mic 3.533641e-01 7.933915e-01 8.283900e-01 4.801573e-03
## Ves 4.934131e-01 3.301750e-01 5.498576e-03 8.226560e-01
## Arb 4.985380e-01 7.147953e-01 6.963395e-01 6.475205e-03
## pH 2.708695e-01 3.631301e-01 8.561094e-01 3.715725e-01
## NitBine 1.758248e-01 9.604759e-02 3.232358e-01 3.599810e-02
## Nit15 9.841661e-01 3.310583e-01 6.828917e-01 7.146355e-01
## NitPerPlant 3.388779e-01 6.501416e-01 1.077652e-01 2.220285e-04
## Nit15PerPlant 9.278517e-01 9.445555e-01 5.517928e-01 2.140115e-02
## NitSeed 7.786241e-01 2.637670e-01 4.948461e-01 4.253990e-01
## NitSeed15 8.126602e-02 8.986218e-04 6.540396e-01 5.086759e-02
## NitSeedPerPlant 5.680243e-01 1.991217e-01 5.384687e-01 1.473484e-01
## Nit15SeedPerPlant 7.819437e-01 8.296083e-01 7.975513e-01 5.977514e-01
## NitBineSeedPerPlant 6.686787e-01 2.098649e-01 4.499961e-01 7.855384e-02
## Nit15BineSeedPerPlant 8.423815e-01 8.348996e-01 6.561536e-01 1.870837e-01
## BineAl 1.594513e-01 2.640786e-02 1.463844e-01 1.140884e-02
## BineB 5.998001e-03 1.345236e-02 4.188150e-02 1.271411e-03
## BineCa 5.456727e-04 8.018712e-04 1.989859e-02 1.630610e-01
## BineCo 5.481336e-01 9.839788e-01 4.740344e-01 2.164110e-04
## BineCu 8.116127e-01 1.040900e-01 9.080257e-01 1.921678e-06
## BineFe 4.511440e-02 4.047428e-04 3.425301e-01 1.720797e-05
## BineK 2.501689e-01 4.908826e-02 3.524777e-01 4.110674e-02
## BineMg 8.262845e-01 7.550828e-01 6.587043e-01 2.938880e-03
## BineMn 3.336486e-01 2.690792e-02 1.130459e-01 4.886941e-01
## BineMo 7.929009e-02 7.876819e-01 3.155671e-01 2.683829e-01
## BineNi 7.685897e-02 2.206180e-01 1.893386e-01 1.469353e-03
## BineP 5.199870e-01 3.167127e-02 9.815474e-01 2.761823e-05
## BineS 2.389263e-02 2.925743e-01 1.108232e-01 4.233566e-05
## BineZn 1.905646e-01 1.231763e-01 9.429199e-01 3.060757e-03
## SeedAl 5.609533e-03 7.736261e-02 4.911842e-01 5.292695e-01
## SeedB 1.588414e-01 5.464502e-02 7.594701e-02 1.368866e-01
## SeedCo 4.475892e-01 1.761479e-01 7.991013e-01 4.947375e-03
## SeedCu 2.248032e-01 8.181992e-01 8.434311e-01 1.657678e-04
## SeedFe 5.318762e-03 5.720697e-02 3.538943e-01 8.142357e-02
## SeedK 6.925201e-01 1.654236e-01 4.009641e-01 1.430242e-01
## SeedMg 4.756502e-01 8.389650e-01 5.500346e-01 4.170150e-02
## SeedMn 7.667289e-02 2.178912e-01 1.457736e-01 6.087539e-02
## SeedMo 8.409429e-01 4.825160e-02 3.904859e-01 2.680606e-03
## SeedNi 1.324632e-01 3.648291e-02 4.276881e-01 2.898797e-01
## SeedP 2.879944e-01 7.555102e-01 7.380085e-01 1.358572e-04
## SeedS 3.096928e-01 5.763736e-01 5.665429e-01 5.279974e-02
## SeedZn 1.364844e-02 1.850406e-02 4.018146e-01 1.097659e-01
## SoilAl 4.441481e-01 2.932142e-02 4.366935e-02 4.564931e-01
## SoilB 2.597582e-02 3.583039e-02 1.732153e-01 4.631097e-01
## SoilCa 5.452483e-04 1.514160e-04 7.323750e-03 9.880835e-03
## SoilCo 5.800346e-34 1.386519e-10 8.449411e-09 4.656032e-01
## SoilCu 1.472364e-08 3.323238e-10 5.256973e-05 8.244038e-01
## SoilFe 2.608546e-02 6.743397e-01 3.579940e-01 4.095640e-01
## SoilK 5.854660e-05 5.459314e-05 2.105304e-02 2.470922e-03
## SoilMg 4.867905e-05 4.698321e-05 1.866949e-02 2.357411e-03
## SoilMn 1.149908e-06 2.064063e-03 8.232320e-04 6.154464e-02
## SoilMo 1.541065e-02 8.170713e-05 2.850390e-03 7.583874e-02
## SoilNi 0.000000e+00 4.665554e-12 1.104139e-09 3.879893e-01
## SoilP 4.665554e-12 0.000000e+00 1.945463e-05 3.502060e-01
## SoilS 1.104139e-09 1.945463e-05 0.000000e+00 8.807435e-01
## SoilZn 3.879893e-01 3.502060e-01 8.807435e-01 0.000000e+00
## BinePerPlantAl 3.624164e-01 5.981765e-01 1.864947e-01 1.876050e-04
## BinePerPlantB 2.362695e-01 5.202624e-02 9.911283e-01 1.570649e-01
## BinePerPLantCa 3.585430e-01 9.772446e-02 8.487644e-01 3.528646e-03
## BinePerPlantCo 1.331371e-01 4.803962e-01 9.748598e-02 7.581294e-03
## BinePerPlantCu 1.044700e-01 5.416992e-02 4.590199e-02 1.119110e-01
## BinePerPlantFe 1.022685e-03 4.051579e-04 4.342751e-03 4.602726e-01
## BinePerPlantK 1.306723e-01 3.693693e-01 5.406095e-02 1.165099e-04
## BinePerPlantMg 7.179148e-02 7.481545e-01 9.803458e-02 1.431300e-02
## BinePerPlantMn 4.175565e-01 2.902692e-01 9.460140e-01 2.571990e-02
## BinePerPlantMo 7.552987e-02 9.330588e-01 7.262113e-01 6.838613e-01
## BinePerPlantNi 3.903482e-01 9.242369e-01 1.634027e-01 1.267188e-03
## BinePerPlantP 6.225310e-03 2.035906e-04 1.004078e-02 4.852949e-01
## BinePerPlantSe 7.386057e-01 9.673562e-01 3.706652e-01 5.595067e-02
## BinePerPLantZn 8.995900e-03 1.194194e-01 1.897086e-01 1.659586e-01
## SeedPerPlantAl 7.440864e-01 6.898412e-01 4.768467e-01 3.911058e-02
## SeedPerPlantB 9.956637e-01 7.494538e-01 2.306803e-01 2.120669e-02
## SeedPerPlantCa 1.876999e-01 8.535888e-02 9.217600e-01 5.071529e-01
## SeedPerPlantCo 2.984349e-01 3.920032e-01 6.882094e-01 7.980520e-01
## SeedPerPlantCu 5.409429e-02 5.769875e-02 9.045372e-01 9.776509e-01
## SeedPerPlantFe 4.391683e-02 2.508137e-02 9.408590e-01 8.094591e-01
## SeedPerPlantK 5.898725e-01 4.200782e-01 5.286573e-01 2.786794e-01
## SeedPerPlantMg 4.083809e-01 2.163955e-01 4.933093e-01 5.234967e-01
## SeedPerPlantMn 9.567790e-02 3.524893e-02 6.235100e-01 4.367740e-01
## SeedPerPlantMo 7.174951e-01 7.746748e-01 3.730251e-01 6.976480e-01
## SeedPerPlantNi 7.585943e-01 7.028744e-01 3.472380e-01 9.515012e-01
## SeedPerPlantP 6.320327e-02 5.912303e-02 9.961651e-01 7.486821e-01
## SeedPerPlantS 4.354916e-01 2.613858e-01 5.146000e-01 4.538443e-01
## SeedPerPlantZn 5.225110e-02 2.109505e-02 9.579469e-01 3.481670e-01
## BineSeedPerPlantAl 7.440864e-01 6.898412e-01 4.768467e-01 3.911058e-02
## BineSeedPerPlantB 3.783988e-01 5.984026e-01 1.797979e-01 1.841334e-04
## BineSeedPerPlantCa 1.823262e-01 3.539125e-02 9.763498e-01 1.584811e-01
## BineSeedPerPlantCo 3.433354e-01 9.970532e-02 8.350860e-01 5.405797e-03
## BineSeedPerPlantCu 8.156556e-02 7.551260e-02 8.088346e-01 8.634011e-01
## BineSeedPerPlantFe 6.189784e-02 3.869184e-02 9.683864e-01 7.452324e-01
## BineSeedPerPlantK 3.100244e-03 1.722844e-03 5.287715e-03 3.755312e-01
## BineSeedPerPlantMg 2.670659e-01 6.240486e-01 6.812995e-02 5.649887e-04
## BineSeedPerPlantMo 1.921127e-01 5.357959e-02 8.210497e-01 2.800701e-01
## BineSeedPerPlantNi 4.436186e-01 2.977575e-01 7.867348e-01 2.482016e-02
## BineSeedPerPlantP 1.131420e-01 9.574411e-01 9.950992e-01 7.131697e-01
## BineSeedPerPlantS 8.861266e-02 7.175060e-02 9.067292e-01 9.716005e-01
## BineSeedPerPlantS.1 3.240458e-02 4.469016e-03 1.308210e-02 3.934145e-01
## BineSeedPerPlantZn 5.331350e-02 2.195612e-02 9.670608e-01 3.392392e-01
## BinePerPlantAl BinePerPlantB BinePerPLantCa
## BineM 1.494682e-19 3.709157e-03 3.011352e-11
## SeedM 3.474709e-08 7.028634e-03 1.032774e-13
## BineSeedM 1.568495e-13 3.117206e-03 7.822823e-15
## SeedN 1.412155e-07 8.380075e-02 3.871792e-05
## SeedMOne 9.356318e-03 3.993424e-04 2.937633e-09
## NodPerPlant 5.345398e-01 1.011553e-01 4.259498e-02
## NodPerPlant.1 1.970743e-01 3.978180e-01 3.796191e-01
## Mic 2.572149e-02 4.725200e-01 2.695650e-01
## Ves 3.906745e-02 5.599894e-02 2.813280e-02
## Arb 1.560270e-03 3.500957e-01 4.105176e-02
## pH 1.831849e-01 1.424032e-01 3.176495e-01
## NitBine 1.360965e-05 5.602082e-01 8.710135e-02
## Nit15 4.675483e-05 2.733402e-01 2.013450e-04
## NitPerPlant 1.006295e-13 3.239943e-10 2.492275e-17
## Nit15PerPlant 2.266859e-01 3.352521e-04 3.248872e-02
## NitSeed 7.285713e-01 1.119663e-01 1.624875e-01
## NitSeed15 5.937317e-08 1.149821e-05 5.441099e-14
## NitSeedPerPlant 1.942423e-06 6.122310e-03 2.764867e-13
## Nit15SeedPerPlant 1.308471e-03 1.292357e-03 3.583268e-06
## NitBineSeedPerPlant 1.089113e-07 1.251573e-03 7.528009e-16
## Nit15BineSeedPerPlant 1.402235e-03 2.606024e-05 1.371072e-06
## BineAl 2.845590e-03 4.938829e-01 7.925728e-03
## BineB 4.133077e-04 1.429556e-02 2.344668e-01
## BineCa 1.297918e-01 5.180737e-04 2.293260e-02
## BineCo 2.449042e-04 6.774191e-01 2.670200e-02
## BineCu 1.264894e-10 9.541677e-02 3.575052e-05
## BineFe 1.266913e-05 3.376824e-02 6.758848e-08
## BineK 3.783762e-04 6.775645e-01 3.980216e-04
## BineMg 3.717573e-05 8.730626e-01 2.666018e-04
## BineMn 9.370495e-01 1.257598e-02 4.389061e-01
## BineMo 3.027543e-02 2.706902e-01 1.941904e-01
## BineNi 5.572171e-04 1.632818e-01 2.878091e-01
## BineP 1.755047e-11 3.216351e-02 4.138118e-07
## BineS 1.421906e-06 8.579881e-01 1.431327e-01
## BineZn 3.561799e-03 7.130810e-01 3.594074e-05
## SeedAl 1.842997e-04 3.472888e-06 4.084685e-10
## SeedB 2.414988e-01 3.843861e-01 8.257815e-01
## SeedCo 4.034722e-01 2.860733e-01 5.746169e-01
## SeedCu 3.542436e-07 1.027167e-01 3.530175e-04
## SeedFe 3.533539e-01 8.013289e-02 7.387156e-01
## SeedK 4.460501e-01 4.244742e-01 3.701922e-01
## SeedMg 2.402928e-01 4.467526e-01 6.877820e-01
## SeedMn 9.186650e-01 5.863761e-03 4.025668e-01
## SeedMo 9.853845e-05 9.305876e-04 2.992681e-02
## SeedNi 2.064662e-02 1.453944e-02 1.253454e-02
## SeedP 1.685595e-07 1.992598e-01 3.295186e-03
## SeedS 4.958186e-01 5.998220e-01 1.880766e-01
## SeedZn 9.844593e-01 5.146090e-03 7.091551e-01
## SoilAl 9.497619e-01 7.121336e-01 3.951675e-02
## SoilB 3.269261e-01 7.761998e-01 2.796661e-01
## SoilCa 7.544700e-02 5.018788e-01 5.676772e-01
## SoilCo 2.636050e-01 2.124998e-01 2.079446e-01
## SoilCu 5.441274e-02 2.226651e-01 7.038973e-01
## SoilFe 7.036308e-01 4.877773e-01 4.837084e-02
## SoilK 2.763922e-05 1.334657e-05 6.677831e-12
## SoilMg 2.126055e-05 1.312088e-05 7.285142e-12
## SoilMn 1.153787e-02 7.280157e-02 6.654913e-01
## SoilMo 6.830144e-01 1.938804e-01 4.668278e-01
## SoilNi 3.624164e-01 2.362695e-01 3.585430e-01
## SoilP 5.981765e-01 5.202624e-02 9.772446e-02
## SoilS 1.864947e-01 9.911283e-01 8.487644e-01
## SoilZn 1.876050e-04 1.570649e-01 3.528646e-03
## BinePerPlantAl 0.000000e+00 4.168597e-08 7.634439e-14
## BinePerPlantB 4.168597e-08 0.000000e+00 8.404129e-12
## BinePerPLantCa 7.634439e-14 8.404129e-12 0.000000e+00
## BinePerPlantCo 7.708180e-22 1.374072e-06 1.085197e-13
## BinePerPlantCu 6.541684e-09 1.164841e-03 1.892199e-09
## BinePerPlantFe 5.536097e-08 1.491853e-02 4.593115e-03
## BinePerPlantK 7.038206e-23 1.393088e-04 1.075175e-11
## BinePerPlantMg 7.281951e-13 4.643152e-10 2.336895e-06
## BinePerPlantMn 1.970775e-09 2.736790e-07 1.158034e-03
## BinePerPlantMo 6.772505e-01 4.711589e-02 9.176391e-04
## BinePerPlantNi 4.980637e-27 2.784528e-07 1.087143e-19
## BinePerPlantP 3.189770e-05 1.014627e-03 4.417827e-05
## BinePerPlantSe 2.758901e-11 2.571017e-06 5.635081e-19
## BinePerPLantZn 1.229090e-06 7.457793e-05 3.364959e-02
## SeedPerPlantAl 4.479583e-07 8.021981e-02 2.072193e-08
## SeedPerPlantB 2.946060e-07 1.173270e-02 4.925023e-08
## SeedPerPlantCa 8.860069e-04 1.227337e-03 8.665575e-09
## SeedPerPlantCo 1.975162e-03 1.787074e-02 4.405974e-07
## SeedPerPlantCu 6.580698e-03 1.197438e-02 4.141588e-08
## SeedPerPlantFe 4.712013e-04 2.891430e-03 2.565194e-08
## SeedPerPlantK 4.228003e-05 8.612466e-02 1.797612e-07
## SeedPerPlantMg 1.324471e-04 1.597249e-02 1.564429e-09
## SeedPerPlantMn 2.615817e-05 1.699619e-04 5.708143e-09
## SeedPerPlantMo 2.532623e-01 6.321050e-01 6.926521e-04
## SeedPerPlantNi 7.561288e-02 9.808283e-01 1.010321e-02
## SeedPerPlantP 3.336086e-02 1.276292e-02 1.289921e-07
## SeedPerPlantS 2.950221e-04 6.933099e-02 1.120296e-08
## SeedPerPlantZn 2.457777e-06 2.453179e-05 4.523770e-10
## BineSeedPerPlantAl 4.479583e-07 8.021981e-02 2.072193e-08
## BineSeedPerPlantB 4.364809e-83 5.279934e-08 2.956927e-14
## BineSeedPerPlantCa 1.032351e-08 2.840321e-45 1.017626e-14
## BineSeedPerPlantCo 1.518051e-13 2.081651e-11 1.009712e-78
## BineSeedPerPlantCu 1.342467e-03 5.207280e-03 2.782370e-09
## BineSeedPerPlantFe 1.836217e-04 1.946677e-03 5.395013e-09
## BineSeedPerPlantK 1.724829e-09 9.227415e-03 3.298903e-04
## BineSeedPerPlantMg 1.916769e-21 1.034425e-04 1.629704e-14
## BineSeedPerPlantMo 5.255760e-07 8.225333e-06 2.099067e-10
## BineSeedPerPlantNi 7.557688e-12 1.230547e-07 1.748751e-05
## BineSeedPerPlantP 3.095598e-01 5.711819e-02 2.703990e-05
## BineSeedPerPlantS 6.683713e-03 4.675423e-03 4.214936e-09
## BineSeedPerPlantS.1 6.189441e-07 4.346652e-04 1.879302e-08
## BineSeedPerPlantZn 1.870429e-06 2.097793e-05 2.722832e-10
## BinePerPlantCo BinePerPlantCu BinePerPlantFe
## BineM 8.980286e-19 1.173801e-13 2.653164e-08
## SeedM 1.290804e-08 8.098674e-07 2.573478e-02
## BineSeedM 8.720929e-14 1.982998e-10 1.685925e-04
## SeedN 1.406053e-06 2.795032e-08 4.046656e-07
## SeedMOne 4.308921e-03 1.068128e-01 3.153609e-01
## NodPerPlant 2.320188e-01 1.807564e-01 2.729247e-02
## NodPerPlant.1 9.812168e-04 2.815038e-04 3.820938e-03
## Mic 5.978797e-02 4.100511e-01 2.079956e-02
## Ves 7.024987e-02 8.415083e-02 3.205012e-01
## Arb 5.307062e-03 8.134344e-02 5.793751e-03
## pH 3.278071e-01 9.633688e-03 2.882361e-01
## NitBine 6.340316e-05 3.873245e-04 1.208475e-06
## Nit15 2.168507e-06 5.769171e-03 7.630697e-03
## NitPerPlant 7.643619e-14 3.344922e-10 3.452431e-04
## Nit15PerPlant 4.977348e-01 7.277604e-02 9.984760e-01
## NitSeed 5.600998e-01 3.512500e-01 2.464360e-01
## NitSeed15 1.592485e-05 8.701765e-04 1.063841e-01
## NitSeedPerPlant 8.419669e-07 1.517805e-05 8.991809e-02
## Nit15SeedPerPlant 7.434936e-05 2.385459e-03 1.496049e-01
## NitBineSeedPerPlant 4.212672e-08 1.741743e-06 4.744414e-02
## Nit15BineSeedPerPlant 3.434095e-04 9.883925e-04 2.252510e-01
## BineAl 9.110472e-05 1.983671e-07 2.821165e-04
## BineB 3.041252e-04 7.830593e-05 1.415324e-04
## BineCa 1.793708e-01 8.521573e-02 4.313216e-04
## BineCo 4.148621e-02 3.241334e-03 7.132564e-02
## BineCu 4.440866e-06 4.210676e-02 1.076521e-02
## BineFe 1.586439e-03 1.003645e-02 2.701892e-01
## BineK 9.635781e-03 3.580480e-02 4.564969e-01
## BineMg 6.946697e-04 3.495161e-06 1.808324e-02
## BineMn 8.863992e-01 1.422006e-03 7.073897e-01
## BineMo 3.522480e-02 6.097324e-01 1.182000e-02
## BineNi 1.171440e-02 1.710721e-03 6.962675e-03
## BineP 1.660356e-06 1.023943e-03 1.689681e-02
## BineS 6.492352e-05 1.444302e-02 3.862906e-05
## BineZn 1.121586e-01 5.042047e-03 9.239162e-01
## SeedAl 5.173905e-04 3.014672e-03 8.713959e-02
## SeedB 1.296566e-01 1.446127e-01 2.540483e-02
## SeedCo 3.094091e-01 6.898488e-01 5.432274e-01
## SeedCu 1.142509e-05 1.931387e-03 1.037079e-02
## SeedFe 5.755628e-01 2.966745e-01 4.277131e-01
## SeedK 6.574988e-01 8.230345e-01 4.208742e-01
## SeedMg 7.750907e-01 4.713371e-01 3.205610e-01
## SeedMn 5.162671e-01 2.820239e-01 5.549710e-01
## SeedMo 2.595201e-02 6.150092e-01 5.635150e-02
## SeedNi 1.585676e-01 1.879338e-01 9.209701e-01
## SeedP 1.690423e-05 1.562833e-03 1.042808e-03
## SeedS 5.666565e-01 7.084909e-01 4.945338e-01
## SeedZn 6.575901e-01 5.349409e-01 6.663805e-01
## SoilAl 7.639847e-01 1.194555e-03 6.084138e-01
## SoilB 4.133621e-01 4.649027e-01 8.514974e-02
## SoilCa 3.286648e-01 2.174960e-01 4.259017e-04
## SoilCo 8.729999e-02 1.176930e-01 2.812061e-04
## SoilCu 3.533551e-02 4.361013e-02 9.930217e-06
## SoilFe 9.707889e-01 2.694191e-01 3.125170e-01
## SoilK 2.124079e-04 4.578495e-03 9.607337e-01
## SoilMg 1.737487e-04 4.321508e-03 9.312277e-01
## SoilMn 7.014770e-03 5.564027e-01 7.057176e-03
## SoilMo 6.003520e-01 5.692499e-03 6.817302e-02
## SoilNi 1.331371e-01 1.044700e-01 1.022685e-03
## SoilP 4.803962e-01 5.416992e-02 4.051579e-04
## SoilS 9.748598e-02 4.590199e-02 4.342751e-03
## SoilZn 7.581294e-03 1.119110e-01 4.602726e-01
## BinePerPlantAl 7.708180e-22 6.541684e-09 5.536097e-08
## BinePerPlantB 1.374072e-06 1.164841e-03 1.491853e-02
## BinePerPLantCa 1.085197e-13 1.892199e-09 4.593115e-03
## BinePerPlantCo 0.000000e+00 1.231782e-14 3.557917e-11
## BinePerPlantCu 1.231782e-14 0.000000e+00 5.936691e-10
## BinePerPlantFe 3.557917e-11 5.936691e-10 0.000000e+00
## BinePerPlantK 1.002425e-23 2.485644e-16 1.143098e-10
## BinePerPlantMg 3.232218e-15 1.094187e-04 1.368399e-07
## BinePerPlantMn 2.535686e-09 1.234104e-01 3.349157e-04
## BinePerPlantMo 8.785327e-01 1.812535e-03 8.532080e-01
## BinePerPlantNi 9.974636e-37 3.171809e-16 1.164397e-09
## BinePerPlantP 3.023683e-11 2.268712e-17 1.518255e-11
## BinePerPlantSe 1.595773e-12 1.190568e-16 6.928220e-05
## BinePerPLantZn 4.349972e-10 1.589629e-03 6.546119e-08
## SeedPerPlantAl 4.329040e-08 7.742116e-06 2.544365e-02
## SeedPerPlantB 2.791538e-08 1.595214e-06 3.320518e-03
## SeedPerPlantCa 2.757584e-04 1.667368e-02 8.667824e-01
## SeedPerPlantCo 8.487134e-06 3.981097e-04 1.445559e-01
## SeedPerPlantCu 1.635914e-03 1.141606e-03 4.596052e-01
## SeedPerPlantFe 8.403552e-05 9.575808e-04 1.762043e-01
## SeedPerPlantK 1.032479e-06 7.926915e-05 4.206394e-02
## SeedPerPlantMg 7.581395e-06 1.269987e-04 2.037698e-01
## SeedPerPlantMn 2.030425e-06 3.665945e-03 2.244946e-01
## SeedPerPlantMo 3.160417e-02 8.192473e-05 6.867713e-01
## SeedPerPlantNi 3.768967e-03 2.120457e-03 5.084275e-02
## SeedPerPlantP 7.567409e-03 5.116440e-03 9.190391e-01
## SeedPerPlantS 1.188052e-05 7.167729e-05 1.561416e-01
## SeedPerPlantZn 2.068094e-07 1.963435e-04 7.244114e-02
## BineSeedPerPlantAl 4.329040e-08 7.742116e-06 2.544365e-02
## BineSeedPerPlantB 2.273803e-22 3.564542e-09 5.891319e-08
## BineSeedPerPlantCa 2.128458e-07 5.900671e-04 2.628993e-02
## BineSeedPerPlantCo 7.155135e-14 1.703706e-09 4.831131e-03
## BineSeedPerPlantCu 2.003600e-04 2.312385e-04 2.514697e-01
## BineSeedPerPlantFe 2.122799e-05 1.973048e-04 1.032120e-01
## BineSeedPerPlantK 7.469838e-14 1.303920e-11 7.287265e-47
## BineSeedPerPlantMg 4.942857e-24 3.627298e-16 1.024635e-08
## BineSeedPerPlantMo 1.502785e-08 9.181396e-04 6.562161e-02
## BineSeedPerPlantNi 5.467521e-13 1.278276e-02 1.036222e-04
## BineSeedPerPlantP 2.576205e-01 2.779229e-05 6.190605e-01
## BineSeedPerPlantS 1.019607e-03 9.537024e-04 5.756854e-01
## BineSeedPerPlantS.1 2.742161e-15 1.662257e-22 1.795715e-10
## BineSeedPerPlantZn 1.498783e-07 1.500002e-04 6.686021e-02
## BinePerPlantK BinePerPlantMg BinePerPlantMn
## BineM 1.044413e-35 1.459958e-05 8.080681e-04
## SeedM 2.001993e-09 6.042526e-02 1.043098e-01
## BineSeedM 7.995037e-18 2.243337e-03 1.293571e-02
## SeedN 1.269280e-12 3.563403e-02 4.832108e-01
## SeedMOne 9.215216e-02 2.680638e-01 7.179964e-02
## NodPerPlant 3.968159e-01 1.057936e-01 3.799846e-01
## NodPerPlant.1 9.813650e-04 7.142975e-02 3.761023e-01
## Mic 3.023157e-02 9.214682e-02 1.340045e-01
## Ves 6.734791e-02 2.786900e-01 3.532243e-01
## Arb 1.180019e-03 7.734752e-02 1.366323e-01
## pH 8.885569e-01 4.669526e-05 4.492333e-10
## NitBine 6.145828e-10 1.550046e-01 1.025331e-01
## Nit15 2.407793e-05 1.563160e-02 7.876810e-03
## NitPerPlant 1.511438e-11 1.743801e-10 1.895465e-04
## Nit15PerPlant 4.314384e-01 7.779348e-02 9.107984e-01
## NitSeed 7.949949e-02 7.652422e-01 9.984832e-01
## NitSeed15 8.786891e-06 4.100276e-02 4.205778e-02
## NitSeedPerPlant 1.234087e-06 9.909177e-02 2.101258e-01
## Nit15SeedPerPlant 2.978958e-03 4.611473e-03 1.849414e-02
## NitBineSeedPerPlant 9.072476e-08 2.944447e-02 1.147196e-01
## Nit15BineSeedPerPlant 4.961291e-03 1.905360e-03 4.335166e-02
## BineAl 1.619725e-09 4.600431e-01 6.980366e-01
## BineB 1.129855e-08 3.552355e-01 8.377413e-01
## BineCa 1.596254e-03 7.475533e-01 7.615134e-01
## BineCo 4.952649e-07 8.458095e-01 6.116592e-01
## BineCu 3.249692e-10 5.029752e-03 4.978976e-04
## BineFe 1.413458e-05 3.208027e-01 3.346335e-01
## BineK 4.329651e-04 8.420480e-01 6.607409e-01
## BineMg 2.605324e-09 7.622118e-01 4.010136e-01
## BineMn 5.612154e-02 1.551796e-03 2.098278e-08
## BineMo 4.244440e-02 9.847176e-03 1.345809e-05
## BineNi 1.362720e-07 8.147250e-01 9.878114e-01
## BineP 1.551091e-11 2.283735e-02 9.630236e-03
## BineS 5.067461e-09 1.117543e-02 1.437553e-03
## BineZn 1.413809e-04 1.927698e-01 5.314902e-02
## SeedAl 1.853203e-03 4.755521e-02 1.991423e-01
## SeedB 5.601398e-02 7.001082e-02 8.111234e-02
## SeedCo 5.481606e-01 3.224006e-01 3.162733e-01
## SeedCu 1.998262e-07 4.237753e-03 1.031793e-02
## SeedFe 1.968090e-01 6.769362e-01 5.120937e-01
## SeedK 8.908648e-01 7.389962e-01 2.765717e-01
## SeedMg 1.605210e-01 8.786020e-01 7.216836e-01
## SeedMn 2.597131e-01 1.168920e-01 3.887339e-03
## SeedMo 3.254191e-02 3.779098e-05 1.608911e-07
## SeedNi 9.014905e-02 1.319976e-01 6.794396e-01
## SeedP 1.592404e-08 4.162113e-03 1.195794e-02
## SeedS 6.008762e-01 6.921506e-01 9.454107e-01
## SeedZn 6.965576e-01 7.353806e-02 7.353937e-03
## SoilAl 1.294249e-01 1.536861e-01 8.600333e-05
## SoilB 7.058249e-01 7.130168e-02 9.572030e-03
## SoilCa 8.403825e-03 2.796240e-01 5.587548e-01
## SoilCo 9.481221e-02 3.269246e-02 2.070226e-01
## SoilCu 2.074349e-03 1.599270e-01 2.848893e-01
## SoilFe 9.931948e-01 1.020739e-01 9.080759e-03
## SoilK 2.269995e-04 3.069268e-02 2.806887e-02
## SoilMg 1.602072e-04 2.877944e-02 2.558310e-02
## SoilMn 3.369025e-02 1.364416e-06 4.658674e-07
## SoilMo 2.043598e-02 4.079088e-01 3.436452e-03
## SoilNi 1.306723e-01 7.179148e-02 4.175565e-01
## SoilP 3.693693e-01 7.481545e-01 2.902692e-01
## SoilS 5.406095e-02 9.803458e-02 9.460140e-01
## SoilZn 1.165099e-04 1.431300e-02 2.571990e-02
## BinePerPlantAl 7.038206e-23 7.281951e-13 1.970775e-09
## BinePerPlantB 1.393088e-04 4.643152e-10 2.736790e-07
## BinePerPLantCa 1.075175e-11 2.336895e-06 1.158034e-03
## BinePerPlantCo 1.002425e-23 3.232218e-15 2.535686e-09
## BinePerPlantCu 2.485644e-16 1.094187e-04 1.234104e-01
## BinePerPlantFe 1.143098e-10 1.368399e-07 3.349157e-04
## BinePerPlantK 0.000000e+00 9.192107e-09 4.805723e-05
## BinePerPlantMg 9.192107e-09 0.000000e+00 5.916594e-21
## BinePerPlantMn 4.805723e-05 5.916594e-21 0.000000e+00
## BinePerPlantMo 2.302918e-01 1.416810e-01 2.324266e-04
## BinePerPlantNi 1.238387e-30 2.798444e-11 9.645527e-07
## BinePerPlantP 1.683267e-08 1.328325e-07 1.979371e-02
## BinePerPlantSe 4.863627e-14 1.419145e-04 1.326862e-01
## BinePerPLantZn 3.204405e-05 4.801962e-21 2.950038e-17
## SeedPerPlantAl 8.968386e-09 4.224216e-02 4.017398e-02
## SeedPerPlantB 1.140233e-09 1.167643e-02 1.285612e-02
## SeedPerPlantCa 3.757827e-03 7.823604e-02 3.515891e-02
## SeedPerPlantCo 7.259599e-04 7.491700e-02 4.697033e-02
## SeedPerPlantCu 4.724266e-03 5.962560e-01 6.816291e-01
## SeedPerPlantFe 3.581392e-04 9.346049e-02 1.036910e-01
## SeedPerPlantK 1.860016e-06 1.099550e-01 5.484516e-02
## SeedPerPlantMg 5.027180e-05 1.782150e-01 1.550585e-01
## SeedPerPlantMn 2.145913e-04 7.533971e-03 6.068225e-04
## SeedPerPlantMo 1.432013e-02 7.426298e-02 1.606088e-02
## SeedPerPlantNi 8.520361e-03 9.429837e-01 5.798552e-01
## SeedPerPlantP 3.785658e-02 7.801337e-01 8.489490e-01
## SeedPerPlantS 3.423941e-05 3.178551e-01 2.761027e-01
## SeedPerPlantZn 2.033528e-06 1.984573e-03 8.057889e-04
## BineSeedPerPlantAl 8.968386e-09 4.224216e-02 4.017398e-02
## BineSeedPerPlantB 1.001884e-23 1.714064e-12 2.935642e-09
## BineSeedPerPlantCa 4.815333e-05 2.672530e-09 3.606781e-07
## BineSeedPerPlantCo 1.306487e-11 3.332153e-06 1.145340e-03
## BineSeedPerPlantCu 8.815679e-04 3.215396e-01 4.265509e-01
## BineSeedPerPlantFe 9.616594e-05 6.427490e-02 9.376345e-02
## BineSeedPerPlantK 3.978503e-13 1.444495e-07 1.849309e-04
## BineSeedPerPlantMg 8.406346e-43 1.985400e-07 1.242650e-04
## BineSeedPerPlantMo 1.402506e-05 1.690791e-04 1.170771e-05
## BineSeedPerPlantNi 5.949431e-07 7.450606e-20 3.313433e-41
## BineSeedPerPlantP 3.829003e-02 1.531815e-01 1.066050e-03
## BineSeedPerPlantS 7.484684e-03 4.468036e-01 5.656707e-01
## BineSeedPerPlantS.1 2.191824e-11 7.488919e-07 1.582239e-02
## BineSeedPerPlantZn 1.486716e-06 1.801935e-03 8.134682e-04
## BinePerPlantMo BinePerPlantNi BinePerPlantP
## BineM 3.718677e-01 3.768417e-26 2.037334e-05
## SeedM 1.497829e-01 4.678623e-12 4.161894e-02
## BineSeedM 2.027241e-01 8.929399e-20 1.750313e-03
## SeedN 1.237158e-02 8.261275e-09 2.167122e-03
## SeedMOne 3.915633e-01 6.608659e-04 8.921779e-01
## NodPerPlant 4.044616e-02 9.656525e-01 1.393547e-04
## NodPerPlant.1 2.342172e-01 8.642781e-03 9.983344e-06
## Mic 1.171120e-01 4.104410e-02 8.079181e-01
## Ves 6.280195e-02 5.533594e-02 8.282992e-02
## Arb 3.929679e-01 2.092443e-03 8.434370e-01
## pH 1.714965e-12 8.625682e-01 3.153363e-01
## NitBine 4.232026e-01 7.651411e-06 1.663900e-01
## Nit15 1.554352e-02 2.177260e-06 1.882059e-01
## NitPerPlant 1.469690e-02 1.099452e-15 1.722796e-08
## Nit15PerPlant 3.264213e-07 3.337945e-01 1.414057e-02
## NitSeed 6.529880e-01 7.254336e-01 5.347190e-01
## NitSeed15 8.706802e-02 1.806971e-08 5.717214e-01
## NitSeedPerPlant 1.703942e-01 1.565519e-09 7.635348e-02
## Nit15SeedPerPlant 1.285461e-01 6.515642e-05 9.402755e-03
## NitBineSeedPerPlant 1.195297e-01 2.616263e-11 2.507425e-02
## Nit15BineSeedPerPlant 1.554713e-03 1.866474e-04 1.456656e-03
## BineAl 1.152154e-01 6.513732e-06 2.373927e-03
## BineB 9.464190e-01 9.631048e-05 2.522959e-02
## BineCa 1.517234e-02 2.553170e-01 3.306648e-01
## BineCo 1.444213e-01 7.847432e-04 9.630546e-01
## BineCu 3.588650e-01 2.181467e-08 8.868692e-01
## BineFe 3.758711e-02 1.466224e-05 8.064501e-01
## BineK 6.771054e-01 2.444221e-04 2.831022e-01
## BineMg 7.371148e-03 3.495208e-06 2.011931e-01
## BineMn 9.657714e-07 4.247166e-01 1.739178e-01
## BineMo 1.171419e-19 1.479292e-01 5.292378e-01
## BineNi 9.000185e-01 1.378944e-03 4.994386e-01
## BineP 6.318741e-01 9.907523e-10 9.515273e-01
## BineS 5.947414e-03 1.330832e-05 4.260031e-01
## BineZn 2.812171e-04 9.514172e-04 7.952981e-01
## SeedAl 1.814552e-03 8.967233e-06 1.033247e-01
## SeedB 3.077050e-01 2.047872e-01 4.490074e-02
## SeedCo 4.313901e-01 7.590989e-01 2.117519e-02
## SeedCu 6.587809e-01 2.015783e-06 1.914766e-01
## SeedFe 5.954003e-01 5.769711e-01 6.443906e-01
## SeedK 6.281023e-03 9.421128e-01 3.634762e-01
## SeedMg 1.875886e-01 6.463217e-01 7.003068e-01
## SeedMn 2.576566e-01 9.724591e-01 9.884338e-01
## SeedMo 8.027052e-02 1.215473e-02 4.915169e-01
## SeedNi 1.728282e-02 8.164806e-02 8.149028e-01
## SeedP 8.615642e-01 2.531284e-06 1.754148e-01
## SeedS 4.384726e-01 6.542600e-01 5.442269e-01
## SeedZn 3.854585e-01 9.933017e-01 8.859570e-01
## SoilAl 2.068071e-09 2.340990e-01 8.843085e-03
## SoilB 4.422358e-02 7.636116e-01 5.724369e-01
## SoilCa 6.807892e-01 2.138355e-01 7.123758e-02
## SoilCo 3.417335e-02 3.859753e-01 7.084629e-03
## SoilCu 7.295500e-02 4.575508e-02 2.041945e-02
## SoilFe 1.244282e-04 6.382395e-01 5.776900e-01
## SoilK 4.403148e-02 1.982082e-06 3.857660e-01
## SoilMg 5.453954e-02 1.532883e-06 3.839844e-01
## SoilMn 8.332712e-04 4.842945e-02 1.454362e-02
## SoilMo 1.901400e-02 2.038690e-01 4.506685e-03
## SoilNi 7.552987e-02 3.903482e-01 6.225310e-03
## SoilP 9.330588e-01 9.242369e-01 2.035906e-04
## SoilS 7.262113e-01 1.634027e-01 1.004078e-02
## SoilZn 6.838613e-01 1.267188e-03 4.852949e-01
## BinePerPlantAl 6.772505e-01 4.980637e-27 3.189770e-05
## BinePerPlantB 4.711589e-02 2.784528e-07 1.014627e-03
## BinePerPLantCa 9.176391e-04 1.087143e-19 4.417827e-05
## BinePerPlantCo 8.785327e-01 9.974636e-37 3.023683e-11
## BinePerPlantCu 1.812535e-03 3.171809e-16 2.268712e-17
## BinePerPlantFe 8.532080e-01 1.164397e-09 1.518255e-11
## BinePerPlantK 2.302918e-01 1.238387e-30 1.683267e-08
## BinePerPlantMg 1.416810e-01 2.798444e-11 1.328325e-07
## BinePerPlantMn 2.324266e-04 9.645527e-07 1.979371e-02
## BinePerPlantMo 0.000000e+00 2.295755e-01 3.552796e-02
## BinePerPlantNi 2.295755e-01 0.000000e+00 3.911307e-09
## BinePerPlantP 3.552796e-02 3.911307e-09 0.000000e+00
## BinePerPlantSe 6.445703e-07 1.509532e-16 4.659120e-09
## BinePerPLantZn 8.988246e-03 6.914843e-06 5.048858e-07
## SeedPerPlantAl 8.171657e-01 9.737315e-10 5.428841e-02
## SeedPerPlantB 6.345513e-01 5.290121e-10 9.820034e-03
## SeedPerPlantCa 3.520980e-01 3.635693e-05 2.383422e-01
## SeedPerPlantCo 8.204301e-01 4.595035e-06 1.682847e-02
## SeedPerPlantCu 6.262753e-02 8.122215e-05 1.697253e-01
## SeedPerPlantFe 3.605086e-01 3.837394e-06 1.627055e-01
## SeedPerPlantK 9.916059e-01 4.998690e-08 7.001566e-02
## SeedPerPlantMg 5.000741e-01 2.103676e-07 7.497938e-02
## SeedPerPlantMn 8.084840e-01 4.696267e-07 1.463003e-01
## SeedPerPlantMo 2.183739e-02 5.620897e-03 1.245014e-01
## SeedPerPlantNi 6.861447e-01 1.701780e-03 9.512780e-02
## SeedPerPlantP 5.225486e-02 7.891693e-04 2.352965e-01
## SeedPerPlantS 4.978146e-01 3.191026e-07 9.671270e-02
## SeedPerPlantZn 4.462964e-01 1.306700e-08 4.675236e-02
## BineSeedPerPlantAl 8.171657e-01 9.737315e-10 5.428841e-02
## BineSeedPerPlantB 6.689227e-01 3.590480e-28 3.083823e-05
## BineSeedPerPlantCa 4.774588e-02 2.136171e-08 1.357291e-03
## BineSeedPerPlantCo 1.405967e-03 8.917950e-20 4.428150e-05
## BineSeedPerPlantCu 7.011558e-02 6.665482e-06 7.695752e-02
## BineSeedPerPlantFe 2.871445e-01 6.942629e-07 8.199537e-02
## BineSeedPerPlantK 8.606412e-01 2.091959e-12 2.118867e-11
## BineSeedPerPlantMg 2.323330e-01 4.642431e-34 1.471302e-07
## BineSeedPerPlantMo 9.853719e-01 5.501489e-09 3.828465e-02
## BineSeedPerPlantNi 1.046113e-03 1.099958e-09 4.853696e-03
## BineSeedPerPlantP 1.382416e-28 2.489262e-02 8.681941e-03
## BineSeedPerPlantS 4.871050e-02 6.156684e-05 1.095302e-01
## BineSeedPerPlantS.1 3.803741e-02 1.293593e-13 6.477525e-32
## BineSeedPerPlantZn 4.162545e-01 8.595082e-09 4.116353e-02
## BinePerPlantSe BinePerPLantZn SeedPerPlantAl
## BineM 3.222530e-12 4.430851e-03 1.232852e-12
## SeedM 7.732814e-09 8.516158e-01 6.229793e-23
## BineSeedM 1.088847e-11 1.692758e-01 1.471661e-21
## SeedN 4.630485e-09 1.958656e-01 8.455587e-06
## SeedMOne 3.459950e-03 5.512639e-01 6.421513e-08
## NodPerPlant 6.624212e-01 2.046934e-03 7.804224e-01
## NodPerPlant.1 9.758253e-02 2.342378e-02 1.302129e-02
## Mic 6.500404e-01 8.498579e-02 4.875941e-01
## Ves 1.555519e-02 8.156549e-01 1.670009e-02
## Arb 1.018734e-01 1.254300e-01 8.036496e-02
## pH 1.247495e-03 7.018069e-06 3.621123e-01
## NitBine 1.214072e-02 2.073057e-01 3.811278e-06
## Nit15 1.009832e-03 1.267157e-01 8.944122e-09
## NitPerPlant 1.474841e-15 6.204478e-05 3.056529e-04
## Nit15PerPlant 1.853065e-02 2.371280e-01 8.414823e-02
## NitSeed 5.867733e-01 4.435974e-01 8.779574e-01
## NitSeed15 1.249768e-07 9.619941e-01 3.770000e-08
## NitSeedPerPlant 1.847547e-07 8.761227e-01 5.285547e-18
## Nit15SeedPerPlant 7.487694e-04 7.399232e-02 1.215700e-06
## NitBineSeedPerPlant 6.098860e-09 7.845970e-01 9.711025e-18
## Nit15BineSeedPerPlant 1.310825e-04 4.860303e-02 1.390530e-03
## BineAl 1.229626e-05 7.816089e-01 1.315577e-06
## BineB 3.161693e-03 3.604685e-01 8.872012e-05
## BineCa 7.756091e-01 1.548045e-01 2.246157e-01
## BineCo 1.948140e-03 1.597136e-01 3.371025e-05
## BineCu 1.895213e-03 2.146656e-01 1.423231e-07
## BineFe 4.337926e-06 4.021786e-01 1.755172e-07
## BineK 2.357369e-03 1.472563e-01 1.411365e-08
## BineMg 4.211413e-07 2.455198e-01 1.748233e-08
## BineMn 9.496733e-04 1.726206e-04 5.405082e-02
## BineMo 2.779367e-02 1.348931e-03 1.267545e-01
## BineNi 1.129314e-02 9.756335e-01 7.279537e-05
## BineP 9.041094e-06 4.544159e-01 1.513780e-09
## BineS 3.456969e-01 3.627326e-02 4.560130e-05
## BineZn 2.123926e-05 1.526182e-04 2.887799e-06
## SeedAl 9.617489e-07 8.675106e-01 3.498671e-02
## SeedB 7.393246e-01 4.214871e-02 1.111367e-01
## SeedCo 8.914745e-01 2.337580e-01 2.805453e-01
## SeedCu 2.619016e-04 3.967638e-02 9.368836e-04
## SeedFe 3.037540e-01 7.379754e-01 9.344087e-01
## SeedK 9.045076e-02 4.289889e-01 4.951417e-02
## SeedMg 2.069541e-01 4.457655e-01 2.367152e-01
## SeedMn 3.831271e-01 5.895266e-02 3.901326e-01
## SeedMo 7.593407e-01 6.514953e-03 8.819279e-01
## SeedNi 1.472818e-04 3.438465e-01 9.816069e-01
## SeedP 4.854456e-04 2.862759e-02 3.192716e-03
## SeedS 9.869147e-01 5.023250e-01 6.453515e-03
## SeedZn 4.445724e-01 6.193932e-02 7.432806e-01
## SoilAl 4.522679e-04 8.120228e-03 3.292979e-01
## SoilB 2.504311e-01 8.516189e-03 6.923108e-01
## SoilCa 8.573078e-01 4.380685e-01 9.648664e-01
## SoilCo 7.923562e-01 7.917838e-04 8.207298e-01
## SoilCu 8.764964e-01 1.070195e-01 3.791767e-02
## SoilFe 2.478921e-02 1.960072e-02 1.497751e-01
## SoilK 5.813851e-06 9.274773e-01 9.636181e-07
## SoilMg 5.359113e-06 9.108432e-01 7.110604e-07
## SoilMn 7.396460e-01 2.583212e-06 5.045258e-01
## SoilMo 5.100358e-02 4.141785e-02 3.289905e-01
## SoilNi 7.386057e-01 8.995900e-03 7.440864e-01
## SoilP 9.673562e-01 1.194194e-01 6.898412e-01
## SoilS 3.706652e-01 1.897086e-01 4.768467e-01
## SoilZn 5.595067e-02 1.659586e-01 3.911058e-02
## BinePerPlantAl 2.758901e-11 1.229090e-06 4.479583e-07
## BinePerPlantB 2.571017e-06 7.457793e-05 8.021981e-02
## BinePerPLantCa 5.635081e-19 3.364959e-02 2.072193e-08
## BinePerPlantCo 1.595773e-12 4.349972e-10 4.329040e-08
## BinePerPlantCu 1.190568e-16 1.589629e-03 7.742116e-06
## BinePerPlantFe 6.928220e-05 6.546119e-08 2.544365e-02
## BinePerPlantK 4.863627e-14 3.204405e-05 8.968386e-09
## BinePerPlantMg 1.419145e-04 4.801962e-21 4.224216e-02
## BinePerPlantMn 1.326862e-01 2.950038e-17 4.017398e-02
## BinePerPlantMo 6.445703e-07 8.988246e-03 8.171657e-01
## BinePerPlantNi 1.509532e-16 6.914843e-06 9.737315e-10
## BinePerPlantP 4.659120e-09 5.048858e-07 5.428841e-02
## BinePerPlantSe 0.000000e+00 3.763034e-02 4.847297e-06
## BinePerPLantZn 3.763034e-02 0.000000e+00 3.745883e-01
## SeedPerPlantAl 4.847297e-06 3.745883e-01 0.000000e+00
## SeedPerPlantB 3.019881e-05 1.470430e-01 1.352926e-17
## SeedPerPlantCa 6.842326e-04 9.070349e-01 1.989467e-13
## SeedPerPlantCo 4.573835e-04 4.788742e-01 5.838217e-13
## SeedPerPlantCu 5.321086e-05 3.883932e-01 1.381635e-10
## SeedPerPlantFe 1.889814e-04 9.548085e-01 8.438447e-12
## SeedPerPlantK 1.523196e-04 6.240051e-01 2.681284e-22
## SeedPerPlantMg 3.810936e-05 8.380338e-01 1.659944e-17
## SeedPerPlantMn 3.881847e-04 1.473126e-01 1.023471e-13
## SeedPerPlantMo 4.345213e-04 1.789448e-02 3.297607e-10
## SeedPerPlantNi 1.384643e-01 5.970455e-01 8.998209e-10
## SeedPerPlantP 2.857683e-04 2.792385e-01 4.047177e-09
## SeedPerPlantS 4.044396e-05 7.817315e-01 4.207888e-19
## SeedPerPlantZn 1.856309e-05 1.146297e-01 4.732858e-14
## BineSeedPerPlantAl 4.847297e-06 3.745883e-01 0.000000e+00
## BineSeedPerPlantB 2.090607e-11 1.932687e-06 1.051798e-07
## BineSeedPerPlantCa 5.410268e-07 3.783591e-04 4.525985e-03
## BineSeedPerPlantCo 1.720355e-18 3.690096e-02 4.250148e-09
## BineSeedPerPlantCu 8.715673e-06 6.729713e-01 1.381044e-11
## BineSeedPerPlantFe 4.741188e-05 9.064783e-01 2.442556e-12
## BineSeedPerPlantK 7.095129e-06 3.268427e-07 5.886389e-04
## BineSeedPerPlantMg 1.406951e-14 5.186540e-04 8.597181e-13
## BineSeedPerPlantMo 8.415951e-05 1.716543e-02 2.563639e-13
## BineSeedPerPlantNi 1.807956e-02 2.720050e-15 4.891145e-04
## BineSeedPerPlantP 5.869952e-08 7.128445e-03 3.534788e-02
## BineSeedPerPlantS 3.474069e-05 5.024936e-01 2.950835e-10
## BineSeedPerPlantS.1 5.071793e-12 2.479607e-05 6.013653e-05
## BineSeedPerPlantZn 1.243600e-05 1.110610e-01 3.836152e-14
## SeedPerPlantB SeedPerPlantCa SeedPerPlantCo
## BineM 1.103012e-11 3.328553e-04 4.799386e-05
## SeedM 2.749380e-17 2.532590e-14 1.246118e-13
## BineSeedM 1.904395e-17 1.657473e-09 4.852072e-10
## SeedN 7.702688e-05 2.098842e-01 1.044915e-01
## SeedMOne 3.951793e-07 1.706851e-18 4.601521e-13
## NodPerPlant 9.537685e-01 3.856005e-01 6.814264e-01
## NodPerPlant.1 1.588413e-02 2.162035e-01 2.031137e-02
## Mic 6.938650e-01 1.554716e-01 1.296833e-01
## Ves 1.311526e-02 9.898726e-04 5.621777e-04
## Arb 1.427942e-01 5.388973e-01 6.403515e-01
## pH 8.663454e-01 6.632340e-01 5.323772e-01
## NitBine 1.365039e-05 2.778268e-01 4.844783e-02
## Nit15 6.691295e-06 1.005668e-04 1.688565e-07
## NitPerPlant 2.950598e-04 1.772726e-03 9.978854e-03
## Nit15PerPlant 3.905614e-01 5.014112e-01 3.527043e-02
## NitSeed 9.497413e-01 5.382768e-02 2.811052e-01
## NitSeed15 8.609352e-07 4.510612e-07 1.096555e-05
## NitSeedPerPlant 3.001075e-14 3.772686e-15 5.673756e-13
## Nit15SeedPerPlant 4.091336e-07 2.521256e-11 7.780988e-08
## NitBineSeedPerPlant 2.883431e-14 9.617489e-15 1.987831e-12
## Nit15BineSeedPerPlant 1.919708e-04 8.471602e-07 6.834309e-04
## BineAl 2.159629e-05 1.221195e-01 1.380824e-02
## BineB 1.301854e-03 8.541959e-01 3.233274e-01
## BineCa 2.637029e-01 1.871081e-02 2.182072e-01
## BineCo 3.278500e-04 2.261788e-01 3.804030e-01
## BineCu 2.427742e-06 5.854044e-03 2.348269e-02
## BineFe 2.817619e-05 6.520235e-05 4.250167e-03
## BineK 5.027531e-05 5.704575e-04 2.073124e-03
## BineMg 3.374012e-06 2.094335e-02 1.304244e-02
## BineMn 2.303427e-01 9.453146e-01 7.056061e-01
## BineMo 1.156621e-01 5.854808e-01 6.891227e-01
## BineNi 7.749076e-04 7.268934e-01 5.568114e-01
## BineP 1.710898e-07 1.808089e-03 8.933232e-03
## BineS 1.824005e-05 3.277028e-01 1.803151e-01
## BineZn 1.155939e-04 1.204511e-03 9.178538e-03
## SeedAl 1.932169e-03 3.203436e-04 9.347222e-04
## SeedB 2.683283e-06 4.619590e-02 2.160444e-02
## SeedCo 5.200071e-02 3.476661e-04 9.388710e-08
## SeedCu 2.011903e-02 6.866156e-01 7.223744e-01
## SeedFe 2.884641e-01 2.550901e-02 1.675162e-02
## SeedK 1.407920e-03 9.897997e-04 8.850835e-07
## SeedMg 4.984999e-02 2.574215e-05 1.240970e-07
## SeedMn 4.233107e-02 8.968893e-05 5.368768e-05
## SeedMo 8.388721e-01 9.283795e-01 2.366003e-01
## SeedNi 4.166724e-01 3.212742e-01 9.472603e-02
## SeedP 3.567489e-02 7.814507e-01 4.392068e-01
## SeedS 1.027631e-04 6.172342e-08 1.399013e-12
## SeedZn 8.709963e-02 1.497571e-02 7.110754e-03
## SoilAl 5.120519e-01 4.643571e-01 5.040811e-01
## SoilB 3.832579e-01 2.097612e-01 1.942871e-01
## SoilCa 2.270939e-01 1.761021e-01 2.064588e-01
## SoilCo 8.058063e-01 7.748473e-02 1.677927e-01
## SoilCu 3.621310e-02 9.503707e-01 4.177084e-01
## SoilFe 3.438319e-01 3.012578e-02 5.896714e-02
## SoilK 8.570911e-07 8.420827e-09 3.789033e-06
## SoilMg 4.292263e-07 5.454363e-09 2.461652e-06
## SoilMn 3.651582e-01 4.947703e-01 6.955697e-01
## SoilMo 2.636407e-01 9.344482e-01 7.523767e-01
## SoilNi 9.956637e-01 1.876999e-01 2.984349e-01
## SoilP 7.494538e-01 8.535888e-02 3.920032e-01
## SoilS 2.306803e-01 9.217600e-01 6.882094e-01
## SoilZn 2.120669e-02 5.071529e-01 7.980520e-01
## BinePerPlantAl 2.946060e-07 8.860069e-04 1.975162e-03
## BinePerPlantB 1.173270e-02 1.227337e-03 1.787074e-02
## BinePerPLantCa 4.925023e-08 8.665575e-09 4.405974e-07
## BinePerPlantCo 2.791538e-08 2.757584e-04 8.487134e-06
## BinePerPlantCu 1.595214e-06 1.667368e-02 3.981097e-04
## BinePerPlantFe 3.320518e-03 8.667824e-01 1.445559e-01
## BinePerPlantK 1.140233e-09 3.757827e-03 7.259599e-04
## BinePerPlantMg 1.167643e-02 7.823604e-02 7.491700e-02
## BinePerPlantMn 1.285612e-02 3.515891e-02 4.697033e-02
## BinePerPlantMo 6.345513e-01 3.520980e-01 8.204301e-01
## BinePerPlantNi 5.290121e-10 3.635693e-05 4.595035e-06
## BinePerPlantP 9.820034e-03 2.383422e-01 1.682847e-02
## BinePerPlantSe 3.019881e-05 6.842326e-04 4.573835e-04
## BinePerPLantZn 1.470430e-01 9.070349e-01 4.788742e-01
## SeedPerPlantAl 1.352926e-17 1.989467e-13 5.838217e-13
## SeedPerPlantB 0.000000e+00 2.340365e-13 4.892865e-14
## SeedPerPlantCa 2.340365e-13 0.000000e+00 3.575488e-22
## SeedPerPlantCo 4.892865e-14 3.575488e-22 0.000000e+00
## SeedPerPlantCu 3.965074e-11 8.971148e-19 1.820071e-21
## SeedPerPlantFe 2.505463e-13 2.793447e-16 1.318417e-16
## SeedPerPlantK 2.444122e-23 1.432168e-18 1.260344e-25
## SeedPerPlantMg 5.337706e-16 4.632644e-22 5.112021e-29
## SeedPerPlantMn 1.027896e-16 5.877620e-26 4.222371e-24
## SeedPerPlantMo 1.172317e-08 3.160957e-08 2.731762e-11
## SeedPerPlantNi 8.072884e-11 2.522528e-09 1.973069e-13
## SeedPerPlantP 1.834259e-09 1.691491e-19 1.049513e-20
## SeedPerPlantS 4.645665e-19 6.524748e-19 9.267339e-25
## SeedPerPlantZn 4.176466e-18 5.165325e-19 6.531197e-19
## BineSeedPerPlantAl 1.352926e-17 1.989467e-13 5.838217e-13
## BineSeedPerPlantB 4.038145e-08 3.624503e-04 8.249328e-04
## BineSeedPerPlantCa 3.361840e-04 2.139645e-06 2.622435e-04
## BineSeedPerPlantCo 9.618536e-09 9.344949e-10 4.271042e-08
## BineSeedPerPlantCu 3.396918e-12 2.528596e-19 7.741649e-23
## BineSeedPerPlantFe 5.137973e-14 4.487135e-16 6.486881e-17
## BineSeedPerPlantK 2.915108e-05 1.828827e-01 7.165404e-03
## BineSeedPerPlantMg 9.420772e-14 1.541450e-05 8.873238e-07
## BineSeedPerPlantMo 1.428006e-16 4.584465e-23 1.031771e-21
## BineSeedPerPlantNi 9.703198e-05 6.158406e-04 5.244243e-04
## BineSeedPerPlantP 1.484470e-02 5.377138e-03 1.865161e-02
## BineSeedPerPlantS 1.167357e-10 2.160543e-20 4.210183e-22
## BineSeedPerPlantS.1 2.511611e-06 1.159623e-03 3.087553e-06
## BineSeedPerPlantZn 3.624437e-18 5.530222e-19 6.773402e-19
## SeedPerPlantCu SeedPerPlantFe SeedPerPlantK
## BineM 2.898171e-04 1.805725e-05 2.359996e-09
## SeedM 5.336645e-15 3.277178e-14 1.496497e-23
## BineSeedM 8.302264e-10 1.153970e-10 2.905169e-18
## SeedN 1.105541e-02 5.642754e-03 7.859006e-04
## SeedMOne 1.668730e-12 6.222273e-11 8.334045e-11
## NodPerPlant 6.114631e-02 6.789916e-02 7.902136e-01
## NodPerPlant.1 5.050353e-01 7.876998e-01 1.240784e-02
## Mic 3.913024e-01 9.361672e-01 8.779230e-01
## Ves 5.102076e-03 1.609419e-02 9.797712e-03
## Arb 9.529130e-01 3.855198e-01 3.399254e-01
## pH 1.033209e-01 7.211243e-01 5.408915e-01
## NitBine 1.477427e-01 4.965137e-02 5.153576e-05
## Nit15 5.532680e-07 8.239059e-07 7.286262e-10
## NitPerPlant 4.635166e-03 1.725753e-03 5.785351e-03
## Nit15PerPlant 1.204515e-01 1.631711e-01 1.206994e-02
## NitSeed 3.362014e-02 1.027955e-01 5.637507e-01
## NitSeed15 6.657836e-10 1.662289e-08 2.846611e-08
## NitSeedPerPlant 1.865400e-16 2.112600e-14 6.905592e-20
## Nit15SeedPerPlant 4.931292e-06 7.659851e-08 7.745784e-07
## NitBineSeedPerPlant 1.145857e-15 4.504178e-14 1.636265e-18
## Nit15BineSeedPerPlant 2.176877e-03 2.097392e-04 3.303384e-03
## BineAl 1.921210e-02 2.310796e-02 2.307100e-05
## BineB 5.093063e-01 4.318822e-01 2.731352e-03
## BineCa 4.218341e-02 1.417057e-01 5.890199e-01
## BineCo 7.496789e-02 6.731975e-02 1.308714e-03
## BineCu 1.753170e-02 1.084351e-03 7.791247e-06
## BineFe 2.447516e-04 1.276789e-04 1.717417e-05
## BineK 1.015256e-04 1.676622e-04 3.607064e-07
## BineMg 1.007122e-03 3.660273e-03 3.130542e-06
## BineMn 1.176802e-01 6.481900e-01 1.619542e-01
## BineMo 3.125694e-01 7.522639e-01 1.374909e-01
## BineNi 4.547411e-01 3.234629e-01 3.811185e-03
## BineP 1.182868e-03 8.430072e-05 8.196161e-07
## BineS 5.307614e-01 8.681171e-02 4.384029e-04
## BineZn 3.154685e-05 1.936121e-04 1.969321e-05
## SeedAl 2.868699e-06 1.964780e-05 6.805752e-04
## SeedB 2.900512e-01 8.126866e-02 2.187539e-02
## SeedCo 1.013837e-03 9.816012e-03 5.359048e-03
## SeedCu 3.164207e-01 4.828786e-01 2.072440e-01
## SeedFe 2.003533e-02 2.823315e-06 2.704253e-01
## SeedK 1.029267e-03 1.243187e-02 5.464101e-05
## SeedMg 5.090230e-05 8.354641e-03 1.435585e-03
## SeedMn 5.970978e-03 2.838557e-03 2.634276e-02
## SeedMo 3.631615e-01 4.661118e-01 6.381415e-01
## SeedNi 7.877004e-01 4.928002e-01 3.153581e-01
## SeedP 2.113912e-01 5.622736e-01 3.106554e-01
## SeedS 5.429793e-10 2.562355e-05 1.093505e-07
## SeedZn 4.948459e-02 5.977412e-03 1.270693e-01
## SoilAl 1.228372e-01 5.550779e-01 4.870793e-01
## SoilB 5.007819e-02 1.986001e-01 3.988896e-01
## SoilCa 1.131073e-01 2.761252e-01 8.692733e-01
## SoilCo 2.149497e-02 1.705510e-02 4.317672e-01
## SoilCu 8.117773e-01 7.419339e-01 5.845060e-02
## SoilFe 1.589171e-02 1.220919e-01 1.447306e-01
## SoilK 1.540637e-07 4.853850e-07 3.415175e-07
## SoilMg 1.121845e-07 2.842064e-07 2.114142e-07
## SoilMn 3.281002e-01 4.681631e-01 7.615711e-01
## SoilMo 4.793100e-01 8.052530e-01 3.988761e-01
## SoilNi 5.409429e-02 4.391683e-02 5.898725e-01
## SoilP 5.769875e-02 2.508137e-02 4.200782e-01
## SoilS 9.045372e-01 9.408590e-01 5.286573e-01
## SoilZn 9.776509e-01 8.094591e-01 2.786794e-01
## BinePerPlantAl 6.580698e-03 4.712013e-04 4.228003e-05
## BinePerPlantB 1.197438e-02 2.891430e-03 8.612466e-02
## BinePerPLantCa 4.141588e-08 2.565194e-08 1.797612e-07
## BinePerPlantCo 1.635914e-03 8.403552e-05 1.032479e-06
## BinePerPlantCu 1.141606e-03 9.575808e-04 7.926915e-05
## BinePerPlantFe 4.596052e-01 1.762043e-01 4.206394e-02
## BinePerPlantK 4.724266e-03 3.581392e-04 1.860016e-06
## BinePerPlantMg 5.962560e-01 9.346049e-02 1.099550e-01
## BinePerPlantMn 6.816291e-01 1.036910e-01 5.484516e-02
## BinePerPlantMo 6.262753e-02 3.605086e-01 9.916059e-01
## BinePerPlantNi 8.122215e-05 3.837394e-06 4.998690e-08
## BinePerPlantP 1.697253e-01 1.627055e-01 7.001566e-02
## BinePerPlantSe 5.321086e-05 1.889814e-04 1.523196e-04
## BinePerPLantZn 3.883932e-01 9.548085e-01 6.240051e-01
## SeedPerPlantAl 1.381635e-10 8.438447e-12 2.681284e-22
## SeedPerPlantB 3.965074e-11 2.505463e-13 2.444122e-23
## SeedPerPlantCa 8.971148e-19 2.793447e-16 1.432168e-18
## SeedPerPlantCo 1.820071e-21 1.318417e-16 1.260344e-25
## SeedPerPlantCu 0.000000e+00 2.800641e-17 3.251400e-20
## SeedPerPlantFe 2.800641e-17 0.000000e+00 1.450581e-16
## SeedPerPlantK 3.251400e-20 1.450581e-16 0.000000e+00
## SeedPerPlantMg 1.568652e-24 2.607257e-16 6.689588e-32
## SeedPerPlantMn 2.243679e-17 2.308083e-18 4.024041e-22
## SeedPerPlantMo 1.206811e-12 3.632886e-07 2.312741e-13
## SeedPerPlantNi 6.576984e-09 1.588546e-10 5.583484e-14
## SeedPerPlantP 8.519636e-46 9.768356e-15 4.293046e-17
## SeedPerPlantS 9.597699e-25 9.981701e-17 6.843926e-40
## SeedPerPlantZn 4.748199e-16 5.730464e-20 6.718785e-21
## BineSeedPerPlantAl 1.381635e-10 8.438447e-12 2.681284e-22
## BineSeedPerPlantB 3.236330e-03 1.869152e-04 1.108410e-05
## BineSeedPerPlantCa 1.909102e-04 3.551437e-05 3.251588e-03
## BineSeedPerPlantCo 5.202362e-09 4.011118e-09 2.212185e-08
## BineSeedPerPlantCu 1.257162e-69 5.360518e-18 7.781144e-22
## BineSeedPerPlantFe 1.887364e-17 1.762440e-77 4.719646e-17
## BineSeedPerPlantK 5.592370e-02 1.430288e-02 6.839750e-04
## BineSeedPerPlantMg 1.745111e-05 1.340628e-06 1.357387e-10
## BineSeedPerPlantMo 7.934325e-15 5.750243e-17 7.397322e-20
## BineSeedPerPlantNi 7.853550e-02 5.067562e-03 4.956039e-04
## BineSeedPerPlantP 1.855496e-04 4.109274e-03 3.231362e-02
## BineSeedPerPlantS 1.627411e-48 9.647633e-16 8.167548e-19
## BineSeedPerPlantS.1 3.263286e-04 7.084980e-04 2.348773e-05
## BineSeedPerPlantZn 4.214653e-16 5.666990e-20 6.620705e-21
## SeedPerPlantMg SeedPerPlantMn SeedPerPlantMo
## BineM 2.896234e-07 1.709076e-05 3.353602e-04
## SeedM 1.794763e-23 3.292993e-14 1.634035e-12
## BineSeedM 7.752769e-16 1.100205e-10 8.081779e-09
## SeedN 1.156269e-02 4.981403e-02 1.285379e-02
## SeedMOne 8.022929e-16 7.691120e-15 7.099570e-07
## NodPerPlant 4.643407e-01 2.779515e-01 9.039738e-01
## NodPerPlant.1 3.228929e-02 4.334461e-01 6.468975e-03
## Mic 5.519822e-01 4.292482e-01 5.596332e-01
## Ves 2.602017e-03 2.563340e-03 1.216252e-01
## Arb 5.567117e-01 9.181144e-01 6.032831e-01
## pH 2.925874e-01 7.209056e-01 5.456942e-06
## NitBine 7.411844e-03 5.241324e-02 2.351691e-02
## Nit15 7.954193e-09 4.003375e-06 4.499922e-04
## NitPerPlant 2.325877e-03 1.186032e-03 1.420540e-01
## Nit15PerPlant 4.041300e-02 2.998974e-01 1.259330e-01
## NitSeed 1.277466e-01 2.354806e-01 5.225484e-01
## NitSeed15 5.949807e-10 4.044253e-08 2.542212e-04
## NitSeedPerPlant 5.565633e-23 3.142040e-13 1.210318e-12
## Nit15SeedPerPlant 1.926601e-06 2.925155e-10 1.041307e-03
## NitBineSeedPerPlant 2.083759e-21 4.513036e-13 1.766530e-11
## Nit15BineSeedPerPlant 2.722023e-03 6.816663e-06 3.548380e-02
## BineAl 2.134149e-03 7.180938e-02 2.810618e-05
## BineB 9.392419e-02 5.785220e-01 1.125756e-02
## BineCa 3.398093e-01 1.017520e-01 9.404803e-01
## BineCo 1.856135e-02 2.200079e-01 7.503793e-03
## BineCu 4.939876e-04 5.340807e-04 1.763141e-01
## BineFe 1.913136e-05 6.668500e-05 9.691162e-04
## BineK 4.032613e-06 2.765031e-04 4.332027e-05
## BineMg 1.180726e-04 1.163290e-02 1.403305e-06
## BineMn 1.985975e-01 4.807192e-01 4.348066e-06
## BineMo 6.386047e-01 6.531282e-01 1.810474e-01
## BineNi 1.024451e-01 4.894917e-01 1.896631e-02
## BineP 4.095310e-05 8.164096e-05 1.250027e-02
## BineS 3.218308e-02 7.612312e-02 3.773472e-01
## BineZn 1.165035e-05 8.874361e-03 3.913335e-06
## SeedAl 5.831309e-05 9.293823e-05 1.154636e-02
## SeedB 1.492480e-01 1.463486e-02 4.957528e-01
## SeedCo 1.981245e-03 2.949316e-04 4.096198e-02
## SeedCu 4.126035e-01 4.453252e-01 7.015590e-01
## SeedFe 2.234330e-01 9.005887e-03 6.919617e-01
## SeedK 9.841378e-04 1.935729e-04 2.725566e-02
## SeedMg 2.424893e-05 3.352477e-04 1.703632e-02
## SeedMn 2.744282e-02 3.081112e-07 9.033381e-01
## SeedMo 5.558931e-01 6.010565e-01 7.662395e-06
## SeedNi 3.370788e-01 5.627228e-01 5.398362e-01
## SeedP 7.232269e-01 8.102334e-01 9.080006e-01
## SeedS 1.346803e-08 5.300205e-08 6.285093e-06
## SeedZn 1.839536e-01 5.532734e-04 3.814762e-01
## SoilAl 1.846449e-01 8.157513e-01 1.172623e-03
## SoilB 1.501353e-01 5.261547e-01 1.032997e-02
## SoilCa 3.901152e-01 2.024391e-01 1.794620e-01
## SoilCo 2.133235e-01 5.529394e-02 3.848865e-01
## SoilCu 3.419636e-01 8.481657e-01 4.953337e-01
## SoilFe 3.437604e-02 2.626958e-01 1.424408e-03
## SoilK 3.536386e-08 9.087199e-09 6.040455e-04
## SoilMg 2.347870e-08 5.002230e-09 5.220128e-04
## SoilMn 8.631999e-01 5.673723e-01 1.778064e-02
## SoilMo 3.287096e-01 2.361152e-01 3.675293e-02
## SoilNi 4.083809e-01 9.567790e-02 7.174951e-01
## SoilP 2.163955e-01 3.524893e-02 7.746748e-01
## SoilS 4.933093e-01 6.235100e-01 3.730251e-01
## SoilZn 5.234967e-01 4.367740e-01 6.976480e-01
## BinePerPlantAl 1.324471e-04 2.615817e-05 2.532623e-01
## BinePerPlantB 1.597249e-02 1.699619e-04 6.321050e-01
## BinePerPLantCa 1.564429e-09 5.708143e-09 6.926521e-04
## BinePerPlantCo 7.581395e-06 2.030425e-06 3.160417e-02
## BinePerPlantCu 1.269987e-04 3.665945e-03 8.192473e-05
## BinePerPlantFe 2.037698e-01 2.244946e-01 6.867713e-01
## BinePerPlantK 5.027180e-05 2.145913e-04 1.432013e-02
## BinePerPlantMg 1.782150e-01 7.533971e-03 7.426298e-02
## BinePerPlantMn 1.550585e-01 6.068225e-04 1.606088e-02
## BinePerPlantMo 5.000741e-01 8.084840e-01 2.183739e-02
## BinePerPlantNi 2.103676e-07 4.696267e-07 5.620897e-03
## BinePerPlantP 7.497938e-02 1.463003e-01 1.245014e-01
## BinePerPlantSe 3.810936e-05 3.881847e-04 4.345213e-04
## BinePerPLantZn 8.380338e-01 1.473126e-01 1.789448e-02
## SeedPerPlantAl 1.659944e-17 1.023471e-13 3.297607e-10
## SeedPerPlantB 5.337706e-16 1.027896e-16 1.172317e-08
## SeedPerPlantCa 4.632644e-22 5.877620e-26 3.160957e-08
## SeedPerPlantCo 5.112021e-29 4.222371e-24 2.731762e-11
## SeedPerPlantCu 1.568652e-24 2.243679e-17 1.206811e-12
## SeedPerPlantFe 2.607257e-16 2.308083e-18 3.632886e-07
## SeedPerPlantK 6.689588e-32 4.024041e-22 2.312741e-13
## SeedPerPlantMg 0.000000e+00 4.068514e-20 1.122773e-14
## SeedPerPlantMn 4.068514e-20 0.000000e+00 1.725638e-06
## SeedPerPlantMo 1.122773e-14 1.725638e-06 0.000000e+00
## SeedPerPlantNi 4.525264e-13 3.015218e-09 1.167539e-09
## SeedPerPlantP 1.212551e-22 1.044491e-16 1.113828e-12
## SeedPerPlantS 3.141368e-40 3.341089e-19 2.663734e-17
## SeedPerPlantZn 5.136177e-18 6.507457e-29 9.011181e-06
## BineSeedPerPlantAl 1.659944e-17 1.023471e-13 3.297607e-10
## BineSeedPerPlantB 4.475098e-05 7.902637e-06 1.702330e-01
## BineSeedPerPlantCa 2.248164e-04 2.842672e-07 5.866531e-01
## BineSeedPerPlantCo 1.151919e-10 5.510644e-10 2.602953e-04
## BineSeedPerPlantCu 3.026212e-26 1.281814e-18 1.806717e-12
## BineSeedPerPlantFe 9.614339e-17 2.453395e-18 1.750839e-07
## BineSeedPerPlantK 1.083332e-02 1.613228e-02 1.484613e-01
## BineSeedPerPlantMg 7.459401e-09 3.721556e-07 2.291624e-04
## BineSeedPerPlantMo 6.436226e-18 6.705311e-53 3.663529e-05
## BineSeedPerPlantNi 3.109761e-03 1.314070e-06 4.601903e-01
## BineSeedPerPlantP 5.183100e-03 3.839980e-02 1.744204e-05
## BineSeedPerPlantS 6.156120e-25 4.099175e-18 1.068660e-12
## BineSeedPerPlantS.1 2.697607e-05 4.118352e-04 3.859254e-04
## BineSeedPerPlantZn 4.513109e-18 8.721458e-29 8.237542e-06
## SeedPerPlantNi SeedPerPlantP SeedPerPlantS SeedPerPlantZn
## BineM 2.409630e-04 4.932094e-03 9.425437e-08 2.819177e-07
## SeedM 1.427690e-08 8.317956e-13 5.689377e-26 6.031918e-15
## BineSeedM 3.581291e-07 8.874195e-08 3.766471e-17 1.439148e-12
## SeedN 1.320100e-01 1.110410e-01 3.710404e-03 3.205207e-03
## SeedMOne 6.384718e-06 7.239726e-15 3.119784e-14 4.386271e-11
## NodPerPlant 6.381128e-01 6.985408e-02 3.653904e-01 3.697690e-01
## NodPerPlant.1 1.919721e-02 5.180390e-01 2.916377e-02 2.810580e-01
## Mic 4.101017e-01 1.824792e-01 7.592230e-01 4.422566e-01
## Ves 6.299552e-03 4.222379e-03 1.164972e-02 9.827060e-04
## Arb 9.483905e-01 6.224236e-01 3.858296e-01 7.348888e-01
## pH 5.588253e-01 8.872736e-02 2.106091e-01 7.904461e-01
## NitBine 4.628849e-03 5.967239e-01 2.474095e-03 8.602889e-03
## Nit15 1.083892e-03 9.481481e-06 1.592142e-09 2.203402e-06
## NitPerPlant 4.521849e-01 8.837397e-03 3.210782e-03 2.757362e-04
## Nit15PerPlant 2.521425e-02 1.884596e-01 2.499701e-02 3.980132e-01
## NitSeed 5.987715e-01 5.454637e-03 1.289826e-01 5.326631e-01
## NitSeed15 4.879465e-03 7.849290e-09 2.793658e-10 7.174653e-09
## NitSeedPerPlant 5.683674e-08 3.144391e-15 6.411650e-26 5.639115e-13
## Nit15SeedPerPlant 3.898267e-04 3.487559e-06 4.767522e-06 3.050406e-08
## NitBineSeedPerPlant 3.146393e-07 1.960866e-14 1.375845e-23 4.464690e-13
## Nit15BineSeedPerPlant 4.196459e-02 1.288363e-03 5.302717e-03 4.630437e-05
## BineAl 6.032275e-03 1.092712e-01 2.505555e-04 1.276239e-02
## BineB 4.711458e-02 9.169442e-01 2.481948e-02 2.773690e-01
## BineCa 5.605152e-01 3.530645e-03 6.185283e-01 3.436887e-01
## BineCo 8.478394e-02 3.296317e-01 6.108861e-03 4.790002e-02
## BineCu 3.395610e-02 1.206914e-01 2.163960e-04 9.869992e-05
## BineFe 7.243049e-02 8.599489e-04 9.228907e-06 1.784650e-05
## BineK 1.305848e-03 9.476083e-04 4.671072e-07 4.705155e-04
## BineMg 4.402521e-03 1.231127e-02 1.085007e-05 2.457947e-03
## BineMn 3.614094e-01 2.048761e-01 9.095523e-02 8.017307e-01
## BineMo 1.876744e-01 1.092824e-01 5.488290e-01 4.930397e-01
## BineNi 1.105640e-01 9.106808e-01 3.344824e-02 1.535788e-01
## BineP 2.204073e-02 1.573615e-02 9.004761e-06 6.878664e-06
## BineS 5.938696e-03 8.245991e-01 1.574168e-02 2.128618e-02
## BineZn 6.408065e-03 3.076241e-04 5.160986e-06 2.025749e-03
## SeedAl 1.615138e-01 8.846490e-06 7.927828e-05 8.023548e-05
## SeedB 1.456365e-02 3.464991e-01 1.133696e-01 1.334987e-02
## SeedCo 3.576442e-03 3.128096e-04 1.040261e-02 5.191764e-03
## SeedCu 7.921751e-01 1.680011e-01 2.848105e-01 2.692109e-01
## SeedFe 5.591989e-02 2.324360e-02 3.233062e-01 6.976407e-03
## SeedK 8.788748e-05 9.725764e-04 1.421728e-03 1.200640e-03
## SeedMg 2.482623e-04 5.641655e-06 9.791274e-04 3.553318e-03
## SeedMn 4.754488e-02 1.492612e-03 6.168919e-02 1.714987e-04
## SeedMo 3.354607e-01 1.949696e-01 3.914093e-01 3.278894e-01
## SeedNi 3.528381e-06 6.434135e-01 5.107768e-01 7.704782e-01
## SeedP 9.975554e-01 4.685961e-02 5.462469e-01 3.794618e-01
## SeedS 6.371348e-06 7.551073e-12 1.493077e-08 5.589743e-06
## SeedZn 1.589751e-01 4.508280e-02 3.071728e-01 1.565996e-05
## SoilAl 5.121059e-01 1.332130e-01 2.614233e-01 9.314406e-01
## SoilB 4.391484e-01 2.447354e-02 1.196369e-01 4.874195e-01
## SoilCa 6.446749e-01 4.069045e-02 4.083669e-01 5.730633e-01
## SoilCo 8.338293e-01 1.581957e-02 2.311428e-01 5.141177e-02
## SoilCu 3.912910e-02 4.479354e-01 2.868660e-01 6.883852e-01
## SoilFe 3.129561e-01 9.509208e-03 6.050785e-02 2.673985e-01
## SoilK 1.018291e-02 1.689954e-07 7.460505e-08 2.218336e-09
## SoilMg 8.772709e-03 1.348841e-07 5.043355e-08 1.062057e-09
## SoilMn 8.006168e-01 2.765993e-01 7.104043e-01 6.471341e-01
## SoilMo 1.906192e-01 7.385452e-01 4.002263e-01 6.518767e-01
## SoilNi 7.585943e-01 6.320327e-02 4.354916e-01 5.225110e-02
## SoilP 7.028744e-01 5.912303e-02 2.613858e-01 2.109505e-02
## SoilS 3.472380e-01 9.961651e-01 5.146000e-01 9.579469e-01
## SoilZn 9.515012e-01 7.486821e-01 4.538443e-01 3.481670e-01
## BinePerPlantAl 7.561288e-02 3.336086e-02 2.950221e-04 2.457777e-06
## BinePerPlantB 9.808283e-01 1.276292e-02 6.933099e-02 2.453179e-05
## BinePerPLantCa 1.010321e-02 1.289921e-07 1.120296e-08 4.523770e-10
## BinePerPlantCo 3.768967e-03 7.567409e-03 1.188052e-05 2.068094e-07
## BinePerPlantCu 2.120457e-03 5.116440e-03 7.167729e-05 1.963435e-04
## BinePerPlantFe 5.084275e-02 9.190391e-01 1.561416e-01 7.244114e-02
## BinePerPlantK 8.520361e-03 3.785658e-02 3.423941e-05 2.033528e-06
## BinePerPlantMg 9.429837e-01 7.801337e-01 3.178551e-01 1.984573e-03
## BinePerPlantMn 5.798552e-01 8.489490e-01 2.761027e-01 8.057889e-04
## BinePerPlantMo 6.861447e-01 5.225486e-02 4.978146e-01 4.462964e-01
## BinePerPlantNi 1.701780e-03 7.891693e-04 3.191026e-07 1.306700e-08
## BinePerPlantP 9.512780e-02 2.352965e-01 9.671270e-02 4.675236e-02
## BinePerPlantSe 1.384643e-01 2.857683e-04 4.044396e-05 1.856309e-05
## BinePerPLantZn 5.970455e-01 2.792385e-01 7.817315e-01 1.146297e-01
## SeedPerPlantAl 8.998209e-10 4.047177e-09 4.207888e-19 4.732858e-14
## SeedPerPlantB 8.072884e-11 1.834259e-09 4.645665e-19 4.176466e-18
## SeedPerPlantCa 2.522528e-09 1.691491e-19 6.524748e-19 5.165325e-19
## SeedPerPlantCo 1.973069e-13 1.049513e-20 9.267339e-25 6.531197e-19
## SeedPerPlantCu 6.576984e-09 8.519636e-46 9.597699e-25 4.748199e-16
## SeedPerPlantFe 1.588546e-10 9.768356e-15 9.981701e-17 5.730464e-20
## SeedPerPlantK 5.583484e-14 4.293046e-17 6.843926e-40 6.718785e-21
## SeedPerPlantMg 4.525264e-13 1.212551e-22 3.141368e-40 5.136177e-18
## SeedPerPlantMn 3.015218e-09 1.044491e-16 3.341089e-19 6.507457e-29
## SeedPerPlantMo 1.167539e-09 1.113828e-12 2.663734e-17 9.011181e-06
## SeedPerPlantNi 0.000000e+00 2.272126e-08 4.531604e-13 2.882197e-08
## SeedPerPlantP 2.272126e-08 0.000000e+00 2.481056e-22 7.205476e-14
## SeedPerPlantS 4.531604e-13 2.481056e-22 0.000000e+00 1.426243e-17
## SeedPerPlantZn 2.882197e-08 7.205476e-14 1.426243e-17 0.000000e+00
## BineSeedPerPlantAl 8.998209e-10 4.047177e-09 4.207888e-19 4.732858e-14
## BineSeedPerPlantB 4.362679e-02 1.901567e-02 9.599963e-05 6.211488e-07
## BineSeedPerPlantCa 2.905620e-01 1.965035e-04 2.309532e-03 4.081798e-08
## BineSeedPerPlantCo 4.099255e-03 1.821737e-08 1.119384e-09 4.603400e-11
## BineSeedPerPlantCu 4.167019e-09 1.264382e-41 2.321812e-26 2.005458e-17
## BineSeedPerPlantFe 1.088565e-10 9.406076e-15 3.144034e-17 2.124093e-20
## BineSeedPerPlantK 2.846039e-03 2.142409e-01 6.339736e-03 2.968381e-03
## BineSeedPerPlantMg 1.487040e-04 4.113174e-04 6.342106e-09 1.064824e-09
## BineSeedPerPlantMo 4.782350e-08 4.509782e-14 9.534998e-17 3.281775e-29
## BineSeedPerPlantNi 7.511733e-02 1.277881e-01 7.900690e-03 3.085178e-06
## BineSeedPerPlantP 1.880940e-02 1.656925e-04 5.124053e-03 1.220906e-02
## BineSeedPerPlantS 1.249156e-08 2.006431e-66 1.742165e-24 2.419725e-15
## BineSeedPerPlantS.1 4.966608e-04 8.022092e-04 3.389345e-05 5.757811e-05
## BineSeedPerPlantZn 3.235042e-08 6.799553e-14 1.255461e-17 3.805594e-118
## BineSeedPerPlantAl BineSeedPerPlantB BineSeedPerPlantCa
## BineM 1.232852e-12 1.501309e-20 7.731877e-04
## SeedM 6.229793e-23 7.205288e-09 1.494702e-04
## BineSeedM 1.471661e-21 1.520164e-14 1.233070e-04
## SeedN 8.455587e-06 1.016101e-07 6.959087e-02
## SeedMOne 6.421513e-08 5.591237e-03 1.889548e-06
## NodPerPlant 7.804224e-01 5.458432e-01 9.805331e-02
## NodPerPlant.1 1.302129e-02 1.696241e-01 6.058855e-01
## Mic 4.875941e-01 2.946887e-02 7.144626e-01
## Ves 1.670009e-02 3.334888e-02 1.717322e-02
## Arb 8.036496e-02 1.700334e-03 4.720278e-01
## pH 3.621123e-01 2.011131e-01 2.176595e-01
## NitBine 3.811278e-06 8.461478e-06 7.569761e-01
## Nit15 8.944122e-09 2.814046e-05 8.282887e-02
## NitPerPlant 3.056529e-04 1.256281e-13 1.401620e-10
## Nit15PerPlant 8.414823e-02 2.610564e-01 2.290366e-03
## NitSeed 8.779574e-01 7.395109e-01 6.821286e-02
## NitSeed15 3.770000e-08 3.109667e-08 3.947503e-07
## NitSeedPerPlant 5.285547e-18 5.738039e-07 1.116666e-04
## Nit15SeedPerPlant 1.215700e-06 7.416181e-04 2.786453e-05
## NitBineSeedPerPlant 9.711025e-18 2.828398e-08 1.448967e-05
## Nit15BineSeedPerPlant 1.390530e-03 9.962938e-04 1.119071e-06
## BineAl 1.315577e-06 1.861894e-03 7.560063e-01
## BineB 8.872012e-05 3.263469e-04 3.070014e-02
## BineCa 2.246157e-01 1.272968e-01 2.811605e-04
## BineCo 3.371025e-05 1.795451e-04 8.926296e-01
## BineCu 1.423231e-07 7.231401e-11 3.972360e-02
## BineFe 1.755172e-07 8.200900e-06 6.767589e-03
## BineK 1.411365e-08 2.522790e-04 3.010899e-01
## BineMg 1.748233e-08 2.164138e-05 7.590763e-01
## BineMn 5.405082e-02 9.887454e-01 2.601096e-02
## BineMo 1.267545e-01 2.925642e-02 2.698725e-01
## BineNi 7.279537e-05 4.258092e-04 2.359821e-01
## BineP 1.513780e-09 7.916192e-12 1.033466e-02
## BineS 4.560130e-05 9.032161e-07 9.735297e-01
## BineZn 2.887799e-06 2.486871e-03 3.401204e-01
## SeedAl 3.498671e-02 1.508562e-04 5.708819e-07
## SeedB 1.111367e-01 1.733695e-01 2.376608e-01
## SeedCo 2.805453e-01 4.792033e-01 9.811563e-02
## SeedCu 9.368836e-04 4.387563e-07 1.205751e-01
## SeedFe 9.344087e-01 3.997120e-01 4.228843e-02
## SeedK 4.951417e-02 5.642842e-01 9.278507e-01
## SeedMg 2.367152e-01 3.013789e-01 1.391120e-01
## SeedMn 3.901326e-01 9.956312e-01 1.010156e-03
## SeedMo 8.819279e-01 1.670464e-04 3.277302e-03
## SeedNi 9.816069e-01 2.844156e-02 4.704537e-02
## SeedP 3.192716e-03 2.347078e-07 2.710705e-01
## SeedS 6.453515e-03 6.400730e-01 1.486504e-01
## SeedZn 7.432806e-01 9.146440e-01 2.431788e-03
## SoilAl 3.292979e-01 9.241694e-01 6.319136e-01
## SoilB 6.923108e-01 3.668125e-01 9.938677e-01
## SoilCa 9.648664e-01 7.441445e-02 3.811668e-01
## SoilCo 8.207298e-01 2.853522e-01 1.390710e-01
## SoilCu 3.791767e-02 4.859517e-02 2.772300e-01
## SoilFe 1.497751e-01 7.499199e-01 2.917553e-01
## SoilK 9.636181e-07 1.509560e-05 2.263159e-07
## SoilMg 7.110604e-07 1.123817e-05 2.065247e-07
## SoilMn 5.045258e-01 1.273955e-02 7.909585e-02
## SoilMo 3.289905e-01 6.502633e-01 2.350056e-01
## SoilNi 7.440864e-01 3.783988e-01 1.823262e-01
## SoilP 6.898412e-01 5.984026e-01 3.539125e-02
## SoilS 4.768467e-01 1.797979e-01 9.763498e-01
## SoilZn 3.911058e-02 1.841334e-04 1.584811e-01
## BinePerPlantAl 4.479583e-07 4.364809e-83 1.032351e-08
## BinePerPlantB 8.021981e-02 5.279934e-08 2.840321e-45
## BinePerPLantCa 2.072193e-08 2.956927e-14 1.017626e-14
## BinePerPlantCo 4.329040e-08 2.273803e-22 2.128458e-07
## BinePerPlantCu 7.742116e-06 3.564542e-09 5.900671e-04
## BinePerPlantFe 2.544365e-02 5.891319e-08 2.628993e-02
## BinePerPlantK 8.968386e-09 1.001884e-23 4.815333e-05
## BinePerPlantMg 4.224216e-02 1.714064e-12 2.672530e-09
## BinePerPlantMn 4.017398e-02 2.935642e-09 3.606781e-07
## BinePerPlantMo 8.171657e-01 6.689227e-01 4.774588e-02
## BinePerPlantNi 9.737315e-10 3.590480e-28 2.136171e-08
## BinePerPlantP 5.428841e-02 3.083823e-05 1.357291e-03
## BinePerPlantSe 4.847297e-06 2.090607e-11 5.410268e-07
## BinePerPLantZn 3.745883e-01 1.932687e-06 3.783591e-04
## SeedPerPlantAl 0.000000e+00 1.051798e-07 4.525985e-03
## SeedPerPlantB 1.352926e-17 4.038145e-08 3.361840e-04
## SeedPerPlantCa 1.989467e-13 3.624503e-04 2.139645e-06
## SeedPerPlantCo 5.838217e-13 8.249328e-04 2.622435e-04
## SeedPerPlantCu 1.381635e-10 3.236330e-03 1.909102e-04
## SeedPerPlantFe 8.438447e-12 1.869152e-04 3.551437e-05
## SeedPerPlantK 2.681284e-22 1.108410e-05 3.251588e-03
## SeedPerPlantMg 1.659944e-17 4.475098e-05 2.248164e-04
## SeedPerPlantMn 1.023471e-13 7.902637e-06 2.842672e-07
## SeedPerPlantMo 3.297607e-10 1.702330e-01 5.866531e-01
## SeedPerPlantNi 8.998209e-10 4.362679e-02 2.905620e-01
## SeedPerPlantP 4.047177e-09 1.901567e-02 1.965035e-04
## SeedPerPlantS 4.207888e-19 9.599963e-05 2.309532e-03
## SeedPerPlantZn 4.732858e-14 6.211488e-07 4.081798e-08
## BineSeedPerPlantAl 0.000000e+00 1.051798e-07 4.525985e-03
## BineSeedPerPlantB 1.051798e-07 0.000000e+00 8.952639e-09
## BineSeedPerPlantCa 4.525985e-03 8.952639e-09 0.000000e+00
## BineSeedPerPlantCo 4.250148e-09 5.045471e-14 1.410535e-14
## BineSeedPerPlantCu 1.381044e-11 5.855226e-04 5.725004e-05
## BineSeedPerPlantFe 2.442556e-12 6.771681e-05 2.149213e-05
## BineSeedPerPlantK 5.886389e-04 1.212997e-09 8.736136e-03
## BineSeedPerPlantMg 8.597181e-13 7.799034e-23 9.143068e-06
## BineSeedPerPlantMo 2.563639e-13 1.301520e-07 5.321549e-09
## BineSeedPerPlantNi 4.891145e-04 6.838935e-12 2.561956e-08
## BineSeedPerPlantP 3.534788e-02 2.674423e-01 2.272109e-02
## BineSeedPerPlantS 2.950835e-10 3.347616e-03 4.493151e-05
## BineSeedPerPlantS.1 6.013653e-05 3.483649e-07 1.090501e-04
## BineSeedPerPlantZn 3.836152e-14 4.645371e-07 3.317320e-08
## BineSeedPerPlantCo BineSeedPerPlantCu BineSeedPerPlantFe
## BineM 2.274433e-11 4.135028e-05 4.223878e-06
## SeedM 1.008029e-14 1.683978e-16 5.535656e-15
## BineSeedM 1.378680e-15 3.388557e-11 1.472421e-11
## SeedN 4.956171e-05 4.783122e-03 2.659472e-03
## SeedMOne 5.429866e-10 1.232032e-12 1.058517e-10
## NodPerPlant 5.462334e-02 8.650503e-02 8.909326e-02
## NodPerPlant.1 3.239750e-01 3.743024e-01 6.462614e-01
## Mic 3.329116e-01 4.931121e-01 9.750851e-01
## Ves 2.011062e-02 4.317635e-03 1.433738e-02
## Arb 5.324933e-02 7.913804e-01 3.445461e-01
## pH 3.172851e-01 1.343727e-01 6.227572e-01
## NitBine 7.694480e-02 8.993896e-02 3.444383e-02
## Nit15 9.443630e-05 1.399277e-07 6.138523e-07
## NitPerPlant 1.664149e-16 1.155884e-03 6.772450e-04
## Nit15PerPlant 5.478565e-02 1.477916e-01 2.091095e-01
## NitSeed 1.583194e-01 4.495898e-02 1.247141e-01
## NitSeed15 3.799795e-14 1.583359e-10 9.906789e-09
## NitSeedPerPlant 3.181319e-14 1.008508e-17 5.581748e-15
## Nit15SeedPerPlant 1.490655e-06 1.903691e-06 5.179171e-08
## NitBineSeedPerPlant 6.744109e-17 3.788476e-17 8.645723e-15
## Nit15BineSeedPerPlant 1.091343e-06 1.148090e-03 1.345360e-04
## BineAl 6.720660e-03 1.031702e-02 1.249695e-02
## BineB 2.281710e-01 3.665307e-01 3.273362e-01
## BineCa 2.350589e-02 6.354465e-02 1.825727e-01
## BineCo 2.883185e-02 5.995334e-02 5.092907e-02
## BineCu 3.755748e-05 8.210558e-03 9.352691e-04
## BineFe 7.397125e-08 1.389018e-04 9.803945e-05
## BineK 3.105090e-04 6.986960e-05 1.455264e-04
## BineMg 2.446967e-04 5.469646e-04 1.937817e-03
## BineMn 4.424642e-01 1.333935e-01 5.353223e-01
## BineMo 2.211791e-01 4.145423e-01 7.804948e-01
## BineNi 2.896010e-01 3.611985e-01 2.556592e-01
## BineP 4.646906e-07 4.432417e-04 5.366177e-05
## BineS 1.357053e-01 3.705346e-01 7.025539e-02
## BineZn 3.397826e-05 3.266904e-05 1.400825e-04
## SeedAl 4.415820e-10 1.352514e-06 1.354970e-05
## SeedB 7.261591e-01 2.542755e-01 7.431827e-02
## SeedCo 4.041787e-01 1.123874e-03 1.111564e-02
## SeedCu 6.800191e-04 5.126705e-01 3.923791e-01
## SeedFe 6.419550e-01 2.780388e-02 7.969853e-06
## SeedK 5.577283e-01 1.358169e-03 1.550425e-02
## SeedMg 4.977980e-01 1.077986e-04 1.162590e-02
## SeedMn 2.983087e-01 6.770715e-03 4.556628e-03
## SeedMo 4.450679e-02 4.775007e-01 4.953864e-01
## SeedNi 2.212169e-02 8.784456e-01 5.526572e-01
## SeedP 5.657790e-03 3.693847e-01 4.599402e-01
## SeedS 1.024790e-01 2.046747e-09 3.885117e-05
## SeedZn 6.030710e-01 5.317649e-02 8.352311e-03
## SoilAl 4.323907e-02 1.297608e-01 4.512661e-01
## SoilB 2.625705e-01 6.764764e-02 1.951130e-01
## SoilCa 5.303927e-01 1.458579e-01 3.217586e-01
## SoilCo 1.946474e-01 3.729088e-02 2.582205e-02
## SoilCu 7.521237e-01 9.429770e-01 6.639667e-01
## SoilFe 4.366042e-02 2.005554e-02 1.160811e-01
## SoilK 3.673807e-12 6.169795e-08 3.528551e-07
## SoilMg 3.790501e-12 4.345781e-08 2.057985e-07
## SoilMn 6.598642e-01 4.576147e-01 5.005465e-01
## SoilMo 4.718001e-01 4.687237e-01 6.940688e-01
## SoilNi 3.433354e-01 8.156556e-02 6.189784e-02
## SoilP 9.970532e-02 7.551260e-02 3.869184e-02
## SoilS 8.350860e-01 8.088346e-01 9.683864e-01
## SoilZn 5.405797e-03 8.634011e-01 7.452324e-01
## BinePerPlantAl 1.518051e-13 1.342467e-03 1.836217e-04
## BinePerPlantB 2.081651e-11 5.207280e-03 1.946677e-03
## BinePerPLantCa 1.009712e-78 2.782370e-09 5.395013e-09
## BinePerPlantCo 7.155135e-14 2.003600e-04 2.122799e-05
## BinePerPlantCu 1.703706e-09 2.312385e-04 1.973048e-04
## BinePerPlantFe 4.831131e-03 2.514697e-01 1.032120e-01
## BinePerPlantK 1.306487e-11 8.815679e-04 9.616594e-05
## BinePerPlantMg 3.332153e-06 3.215396e-01 6.427490e-02
## BinePerPlantMn 1.145340e-03 4.265509e-01 9.376345e-02
## BinePerPlantMo 1.405967e-03 7.011558e-02 2.871445e-01
## BinePerPlantNi 8.917950e-20 6.665482e-06 6.942629e-07
## BinePerPlantP 4.428150e-05 7.695752e-02 8.199537e-02
## BinePerPlantSe 1.720355e-18 8.715673e-06 4.741188e-05
## BinePerPLantZn 3.690096e-02 6.729713e-01 9.064783e-01
## SeedPerPlantAl 4.250148e-09 1.381044e-11 2.442556e-12
## SeedPerPlantB 9.618536e-09 3.396918e-12 5.137973e-14
## SeedPerPlantCa 9.344949e-10 2.528596e-19 4.487135e-16
## SeedPerPlantCo 4.271042e-08 7.741649e-23 6.486881e-17
## SeedPerPlantCu 5.202362e-09 1.257162e-69 1.887364e-17
## SeedPerPlantFe 4.011118e-09 5.360518e-18 1.762440e-77
## SeedPerPlantK 2.212185e-08 7.781144e-22 4.719646e-17
## SeedPerPlantMg 1.151919e-10 3.026212e-26 9.614339e-17
## SeedPerPlantMn 5.510644e-10 1.281814e-18 2.453395e-18
## SeedPerPlantMo 2.602953e-04 1.806717e-12 1.750839e-07
## SeedPerPlantNi 4.099255e-03 4.167019e-09 1.088565e-10
## SeedPerPlantP 1.821737e-08 1.264382e-41 9.406076e-15
## SeedPerPlantS 1.119384e-09 2.321812e-26 3.144034e-17
## SeedPerPlantZn 4.603400e-11 2.005458e-17 2.124093e-20
## BineSeedPerPlantAl 4.250148e-09 1.381044e-11 2.442556e-12
## BineSeedPerPlantB 5.045471e-14 5.855226e-04 6.771681e-05
## BineSeedPerPlantCa 1.410535e-14 5.725004e-05 2.149213e-05
## BineSeedPerPlantCo 0.000000e+00 2.657532e-10 7.476162e-10
## BineSeedPerPlantCu 2.657532e-10 0.000000e+00 2.209230e-18
## BineSeedPerPlantFe 7.476162e-10 2.209230e-18 0.000000e+00
## BineSeedPerPlantK 2.851903e-04 1.954910e-02 6.231407e-03
## BineSeedPerPlantMg 7.707553e-15 1.410559e-06 2.216647e-07
## BineSeedPerPlantMo 1.700380e-11 2.691974e-16 3.601901e-17
## BineSeedPerPlantNi 1.290168e-05 2.974379e-02 3.959236e-03
## BineSeedPerPlantP 2.795726e-05 2.131232e-04 2.356672e-03
## BineSeedPerPlantS 4.301217e-10 1.094152e-47 6.009053e-16
## BineSeedPerPlantS.1 9.592827e-09 5.504962e-05 1.749092e-04
## BineSeedPerPlantZn 2.668637e-11 1.635921e-17 1.911396e-20
## BineSeedPerPlantK BineSeedPerPlantMg BineSeedPerPlantMo
## BineM 5.313297e-11 1.963493e-39 2.016270e-06
## SeedM 5.634775e-04 1.898343e-14 1.280180e-13
## BineSeedM 6.737753e-07 5.387968e-26 3.158046e-11
## SeedN 4.175128e-08 2.146142e-11 3.099981e-02
## SeedMOne 9.711969e-01 2.700945e-03 1.944500e-13
## NodPerPlant 4.370392e-02 5.737543e-01 4.305307e-01
## NodPerPlant.1 1.434596e-03 7.621753e-04 3.190624e-01
## Mic 3.276573e-02 8.512363e-02 6.147989e-01
## Ves 1.656236e-01 2.257306e-02 2.692025e-03
## Arb 5.690588e-03 3.458213e-03 7.276334e-01
## pH 3.753153e-01 7.159835e-01 3.750993e-01
## NitBine 5.915650e-08 1.955172e-09 4.166338e-02
## Nit15 3.808725e-04 4.067954e-07 2.170653e-06
## NitPerPlant 9.658205e-05 4.079380e-11 7.741764e-05
## Nit15PerPlant 6.623380e-01 8.314136e-01 4.698877e-01
## NitSeed 3.254280e-01 2.481954e-01 2.458803e-01
## NitSeed15 1.513685e-02 7.992061e-08 3.797912e-08
## NitSeedPerPlant 4.316875e-03 2.076041e-10 1.493843e-12
## Nit15SeedPerPlant 2.936323e-02 2.315924e-04 1.167144e-10
## NitBineSeedPerPlant 1.815240e-03 7.261820e-12 7.411262e-13
## Nit15BineSeedPerPlant 9.810606e-02 1.648433e-03 2.042046e-06
## BineAl 2.367553e-05 1.962860e-09 7.130417e-02
## BineB 3.100492e-05 1.305712e-07 5.114574e-01
## BineCa 6.908409e-04 1.387313e-02 1.358176e-01
## BineCo 2.347632e-02 8.703603e-07 2.602101e-01
## BineCu 1.398154e-03 2.034450e-10 2.165609e-04
## BineFe 7.473450e-01 1.334664e-06 9.739298e-05
## BineK 1.271040e-01 3.245829e-05 7.557141e-04
## BineMg 2.357877e-03 6.262756e-10 2.022435e-02
## BineMn 5.487253e-01 5.073131e-02 2.687751e-01
## BineMo 8.318227e-03 6.279754e-02 4.314252e-01
## BineNi 2.119204e-03 9.340717e-07 4.934845e-01
## BineP 1.898219e-03 3.013366e-12 4.690240e-05
## BineS 4.799233e-06 3.033436e-08 4.134566e-02
## BineZn 4.264792e-01 1.251578e-05 2.405973e-02
## SeedAl 2.734477e-02 2.588516e-04 6.569529e-05
## SeedB 1.174487e-02 4.640615e-02 1.015246e-02
## SeedCo 2.919232e-01 8.659314e-01 3.817302e-04
## SeedCu 8.301100e-03 4.221584e-06 2.621327e-01
## SeedFe 5.835007e-01 4.059337e-01 1.184635e-02
## SeedK 1.509161e-01 5.413632e-01 3.973010e-04
## SeedMg 6.996447e-01 7.665758e-01 8.674437e-04
## SeedMn 8.676702e-01 6.381869e-01 4.241284e-07
## SeedMo 8.891841e-02 8.945877e-02 2.936145e-01
## SeedNi 7.864143e-01 2.169029e-01 7.417832e-01
## SeedP 1.097206e-03 1.490735e-06 5.312051e-01
## SeedS 8.406852e-01 4.828206e-01 6.984874e-07
## SeedZn 8.919896e-01 9.745207e-01 4.186992e-04
## SoilAl 5.454025e-01 1.048645e-01 6.718352e-01
## SoilB 1.444407e-01 9.969857e-01 7.340237e-01
## SoilCa 1.146320e-03 4.019169e-02 2.974059e-01
## SoilCo 1.261192e-03 2.508270e-01 1.364273e-01
## SoilCu 6.050844e-06 4.010555e-03 7.028828e-01
## SoilFe 4.912169e-01 6.253663e-01 4.129834e-01
## SoilK 3.878716e-01 6.704839e-06 8.030265e-09
## SoilMg 3.627707e-01 4.217796e-06 4.415346e-09
## SoilMn 9.936221e-03 6.151988e-02 2.391416e-01
## SoilMo 6.218343e-02 2.561521e-02 2.163699e-01
## SoilNi 3.100244e-03 2.670659e-01 1.921127e-01
## SoilP 1.722844e-03 6.240486e-01 5.357959e-02
## SoilS 5.287715e-03 6.812995e-02 8.210497e-01
## SoilZn 3.755312e-01 5.649887e-04 2.800701e-01
## BinePerPlantAl 1.724829e-09 1.916769e-21 5.255760e-07
## BinePerPlantB 9.227415e-03 1.034425e-04 8.225333e-06
## BinePerPLantCa 3.298903e-04 1.629704e-14 2.099067e-10
## BinePerPlantCo 7.469838e-14 4.942857e-24 1.502785e-08
## BinePerPlantCu 1.303920e-11 3.627298e-16 9.181396e-04
## BinePerPlantFe 7.287265e-47 1.024635e-08 6.562161e-02
## BinePerPlantK 3.978503e-13 8.406346e-43 1.402506e-05
## BinePerPlantMg 1.444495e-07 1.985400e-07 1.690791e-04
## BinePerPlantMn 1.849309e-04 1.242650e-04 1.170771e-05
## BinePerPlantMo 8.606412e-01 2.323330e-01 9.853719e-01
## BinePerPlantNi 2.091959e-12 4.642431e-34 5.501489e-09
## BinePerPlantP 2.118867e-11 1.471302e-07 3.828465e-02
## BinePerPlantSe 7.095129e-06 1.406951e-14 8.415951e-05
## BinePerPLantZn 3.268427e-07 5.186540e-04 1.716543e-02
## SeedPerPlantAl 5.886389e-04 8.597181e-13 2.563639e-13
## SeedPerPlantB 2.915108e-05 9.420772e-14 1.428006e-16
## SeedPerPlantCa 1.828827e-01 1.541450e-05 4.584465e-23
## SeedPerPlantCo 7.165404e-03 8.873238e-07 1.031771e-21
## SeedPerPlantCu 5.592370e-02 1.745111e-05 7.934325e-15
## SeedPerPlantFe 1.430288e-02 1.340628e-06 5.750243e-17
## SeedPerPlantK 6.839750e-04 1.357387e-10 7.397322e-20
## SeedPerPlantMg 1.083332e-02 7.459401e-09 6.436226e-18
## SeedPerPlantMn 1.613228e-02 3.721556e-07 6.705311e-53
## SeedPerPlantMo 1.484613e-01 2.291624e-04 3.663529e-05
## SeedPerPlantNi 2.846039e-03 1.487040e-04 4.782350e-08
## SeedPerPlantP 2.142409e-01 4.113174e-04 4.509782e-14
## SeedPerPlantS 6.339736e-03 6.342106e-09 9.534998e-17
## SeedPerPlantZn 2.968381e-03 1.064824e-09 3.281775e-29
## BineSeedPerPlantAl 5.886389e-04 8.597181e-13 2.563639e-13
## BineSeedPerPlantB 1.212997e-09 7.799034e-23 1.301520e-07
## BineSeedPerPlantCa 8.736136e-03 9.143068e-06 5.321549e-09
## BineSeedPerPlantCo 2.851903e-04 7.707553e-15 1.700380e-11
## BineSeedPerPlantCu 1.954910e-02 1.410559e-06 2.691974e-16
## BineSeedPerPlantFe 6.231407e-03 2.216647e-07 3.601901e-17
## BineSeedPerPlantK 0.000000e+00 8.395588e-12 2.702227e-03
## BineSeedPerPlantMg 8.395588e-12 0.000000e+00 1.401906e-08
## BineSeedPerPlantMo 2.702227e-03 1.401906e-08 0.000000e+00
## BineSeedPerPlantNi 1.448511e-05 4.098104e-07 4.600609e-09
## BineSeedPerPlantP 3.997748e-01 1.440534e-02 8.311037e-02
## BineSeedPerPlantS 8.644770e-02 3.288007e-05 1.228439e-15
## BineSeedPerPlantS.1 1.947766e-12 3.285893e-12 4.601787e-05
## BineSeedPerPlantZn 2.632179e-03 6.933492e-10 3.477427e-29
## BineSeedPerPlantNi BineSeedPerPlantP BineSeedPerPlantS
## BineM 8.189738e-06 3.525044e-02 6.929372e-04
## SeedM 1.893968e-03 1.163480e-03 1.225407e-14
## BineSeedM 9.362056e-05 3.562854e-03 2.715045e-09
## SeedN 1.985167e-01 3.107058e-03 4.660481e-02
## SeedMOne 2.942364e-03 2.024178e-02 3.569954e-15
## NodPerPlant 3.728820e-01 7.473379e-02 8.286406e-02
## NodPerPlant.1 1.256979e-01 7.430265e-01 3.972038e-01
## Mic 1.516146e-01 7.288169e-02 2.718172e-01
## Ves 1.862406e-01 5.653784e-03 3.468977e-03
## Arb 9.317156e-02 4.278182e-01 8.322708e-01
## pH 2.274687e-07 3.593869e-12 1.059768e-01
## NitBine 2.551381e-02 8.442703e-01 3.827288e-01
## Nit15 2.681804e-04 2.434532e-01 2.444340e-06
## NitPerPlant 1.451378e-05 9.066102e-03 1.829787e-03
## Nit15PerPlant 8.230672e-01 1.206256e-04 2.398908e-01
## NitSeed 8.842821e-01 8.064537e-01 8.627300e-03
## NitSeed15 2.918506e-03 8.155836e-03 8.090583e-10
## NitSeedPerPlant 7.132129e-03 1.873969e-03 4.811618e-17
## Nit15SeedPerPlant 1.142126e-03 6.962220e-03 1.217134e-06
## NitBineSeedPerPlant 2.640935e-03 1.287561e-03 1.993908e-16
## Nit15BineSeedPerPlant 8.911164e-03 1.304517e-04 5.942077e-04
## BineAl 6.381248e-01 1.294443e-02 5.545227e-02
## BineB 4.408479e-01 5.345792e-01 8.240660e-01
## BineCa 7.381923e-01 3.595344e-02 7.312399e-03
## BineCo 9.578208e-01 4.417233e-02 2.217495e-01
## BineCu 5.669227e-05 8.853291e-01 5.249271e-02
## BineFe 8.257397e-02 8.081206e-03 3.229262e-04
## BineK 1.848132e-01 1.361831e-01 4.422541e-04
## BineMg 9.126974e-01 2.671792e-04 5.024164e-03
## BineMn 4.355757e-06 4.095319e-07 1.977904e-01
## BineMo 2.574741e-05 4.091438e-13 1.597229e-01
## BineNi 5.946955e-01 4.999856e-01 8.710942e-01
## BineP 8.657084e-04 2.111857e-01 4.842256e-03
## BineS 3.451162e-04 1.032443e-01 8.872006e-01
## BineZn 2.959387e-01 4.357324e-06 1.586721e-04
## SeedAl 5.535958e-02 4.223850e-04 2.587543e-06
## SeedB 4.694457e-02 8.923779e-01 3.097854e-01
## SeedCo 1.310951e-01 8.138484e-01 5.101045e-04
## SeedCu 5.353223e-03 6.069816e-01 3.498222e-01
## SeedFe 5.509882e-01 8.784031e-01 3.379526e-02
## SeedK 1.015957e-01 2.117622e-01 1.651471e-03
## SeedMg 3.685494e-01 9.715097e-01 1.931263e-05
## SeedMn 2.204945e-03 6.945105e-01 2.354950e-03
## SeedMo 1.827864e-05 4.335989e-02 3.055197e-01
## SeedNi 7.684955e-01 4.622198e-01 7.697907e-01
## SeedP 9.125828e-03 8.685462e-01 1.303859e-01
## SeedS 3.129044e-01 4.734489e-01 7.546150e-11
## SeedZn 9.422482e-03 7.360652e-01 5.483926e-02
## SoilAl 9.653250e-04 2.117347e-09 1.217436e-01
## SoilB 3.462887e-02 2.747911e-02 3.337081e-02
## SoilCa 7.556530e-01 8.171052e-01 6.462710e-02
## SoilCo 2.618591e-01 3.595659e-02 2.572616e-02
## SoilCu 2.023536e-01 3.252840e-01 5.793343e-01
## SoilFe 4.575790e-02 4.688046e-05 1.146148e-02
## SoilK 1.878482e-03 4.181385e-03 3.523809e-08
## SoilMg 1.590048e-03 5.263484e-03 2.701741e-08
## SoilMn 3.885563e-06 2.087294e-03 3.837948e-01
## SoilMo 1.045452e-02 6.359925e-03 6.659117e-01
## SoilNi 4.436186e-01 1.131420e-01 8.861266e-02
## SoilP 2.977575e-01 9.574411e-01 7.175060e-02
## SoilS 7.867348e-01 9.950992e-01 9.067292e-01
## SoilZn 2.482016e-02 7.131697e-01 9.716005e-01
## BinePerPlantAl 7.557688e-12 3.095598e-01 6.683713e-03
## BinePerPlantB 1.230547e-07 5.711819e-02 4.675423e-03
## BinePerPLantCa 1.748751e-05 2.703990e-05 4.214936e-09
## BinePerPlantCo 5.467521e-13 2.576205e-01 1.019607e-03
## BinePerPlantCu 1.278276e-02 2.779229e-05 9.537024e-04
## BinePerPlantFe 1.036222e-04 6.190605e-01 5.756854e-01
## BinePerPlantK 5.949431e-07 3.829003e-02 7.484684e-03
## BinePerPlantMg 7.450606e-20 1.531815e-01 4.468036e-01
## BinePerPlantMn 3.313433e-41 1.066050e-03 5.656707e-01
## BinePerPlantMo 1.046113e-03 1.382416e-28 4.871050e-02
## BinePerPlantNi 1.099958e-09 2.489262e-02 6.156684e-05
## BinePerPlantP 4.853696e-03 8.681941e-03 1.095302e-01
## BinePerPlantSe 1.807956e-02 5.869952e-08 3.474069e-05
## BinePerPLantZn 2.720050e-15 7.128445e-03 5.024936e-01
## SeedPerPlantAl 4.891145e-04 3.534788e-02 2.950835e-10
## SeedPerPlantB 9.703198e-05 1.484470e-02 1.167357e-10
## SeedPerPlantCa 6.158406e-04 5.377138e-03 2.160543e-20
## SeedPerPlantCo 5.244243e-04 1.865161e-02 4.210183e-22
## SeedPerPlantCu 7.853550e-02 1.855496e-04 1.627411e-48
## SeedPerPlantFe 5.067562e-03 4.109274e-03 9.647633e-16
## SeedPerPlantK 4.956039e-04 3.231362e-02 8.167548e-19
## SeedPerPlantMg 3.109761e-03 5.183100e-03 6.156120e-25
## SeedPerPlantMn 1.314070e-06 3.839980e-02 4.099175e-18
## SeedPerPlantMo 4.601903e-01 1.744204e-05 1.068660e-12
## SeedPerPlantNi 7.511733e-02 1.880940e-02 1.249156e-08
## SeedPerPlantP 1.277881e-01 1.656925e-04 2.006431e-66
## SeedPerPlantS 7.900690e-03 5.124053e-03 1.742165e-24
## SeedPerPlantZn 3.085178e-06 1.220906e-02 2.419725e-15
## BineSeedPerPlantAl 4.891145e-04 3.534788e-02 2.950835e-10
## BineSeedPerPlantB 6.838935e-12 2.674423e-01 3.347616e-03
## BineSeedPerPlantCa 2.561956e-08 2.272109e-02 4.493151e-05
## BineSeedPerPlantCo 1.290168e-05 2.795726e-05 4.301217e-10
## BineSeedPerPlantCu 2.974379e-02 2.131232e-04 1.094152e-47
## BineSeedPerPlantFe 3.959236e-03 2.356672e-03 6.009053e-16
## BineSeedPerPlantK 1.448511e-05 3.997748e-01 8.644770e-02
## BineSeedPerPlantMg 4.098104e-07 1.440534e-02 3.288007e-05
## BineSeedPerPlantMo 4.600609e-09 8.311037e-02 1.228439e-15
## BineSeedPerPlantNi 0.000000e+00 1.477261e-02 5.235828e-02
## BineSeedPerPlantP 1.477261e-02 0.000000e+00 1.291972e-04
## BineSeedPerPlantS 5.235828e-02 1.291972e-04 0.000000e+00
## BineSeedPerPlantS.1 7.313465e-04 1.167841e-03 1.327310e-04
## BineSeedPerPlantZn 3.065792e-06 1.065834e-02 2.103662e-15
## BineSeedPerPlantS.1 BineSeedPerPlantZn
## BineM 1.259389e-08 2.061031e-07
## SeedM 1.634457e-05 4.024267e-15
## BineSeedM 1.719497e-07 9.105504e-13
## SeedN 2.226735e-04 2.720896e-03
## SeedMOne 3.917570e-02 4.436007e-11
## NodPerPlant 2.731187e-03 3.699794e-01
## NodPerPlant.1 2.874298e-06 2.750395e-01
## Mic 7.554777e-01 4.486380e-01
## Ves 1.926021e-02 9.476208e-04
## Arb 6.548575e-01 7.214189e-01
## pH 1.990589e-01 8.215385e-01
## NitBine 2.977540e-02 8.229743e-03
## Nit15 3.804025e-03 2.048986e-06
## NitPerPlant 8.221869e-10 2.134042e-04
## Nit15PerPlant 1.508917e-01 4.174821e-01
## NitSeed 9.404080e-01 5.398152e-01
## NitSeed15 2.525086e-02 5.651432e-09
## NitSeedPerPlant 5.608667e-05 4.220375e-13
## Nit15SeedPerPlant 1.637797e-04 2.844884e-08
## NitBineSeedPerPlant 7.635374e-06 3.095844e-13
## Nit15BineSeedPerPlant 1.684275e-04 4.160866e-05
## BineAl 8.973166e-05 1.148247e-02
## BineB 6.704614e-03 2.648363e-01
## BineCa 4.830546e-01 3.450268e-01
## BineCo 3.789503e-01 4.508500e-02
## BineCu 3.282933e-01 9.230749e-05
## BineFe 2.824139e-01 1.532696e-05
## BineK 6.278937e-01 4.409206e-04
## BineMg 1.380938e-02 2.134015e-03
## BineMn 8.176992e-02 8.335079e-01
## BineMo 7.135727e-01 5.130764e-01
## BineNi 2.072960e-01 1.473284e-01
## BineP 1.764761e-01 5.937701e-06
## BineS 1.452706e-01 2.146551e-02
## BineZn 2.746678e-01 1.807894e-03
## SeedAl 7.658130e-03 6.838698e-05
## SeedB 2.224796e-02 1.417213e-02
## SeedCo 4.038238e-03 5.544330e-03
## SeedCu 1.347683e-01 2.537736e-01
## SeedFe 9.218634e-01 7.691099e-03
## SeedK 7.400215e-02 1.413211e-03
## SeedMg 1.797740e-01 4.007522e-03
## SeedMn 5.704375e-01 2.014920e-04
## SeedMo 3.795642e-01 3.291574e-01
## SeedNi 9.997613e-01 8.061584e-01
## SeedP 1.646707e-01 3.603128e-01
## SeedS 3.234991e-02 6.598027e-06
## SeedZn 6.547699e-01 1.918741e-05
## SoilAl 7.361112e-03 8.990283e-01
## SoilB 3.235260e-01 4.813199e-01
## SoilCa 1.857784e-01 5.740379e-01
## SoilCo 4.929595e-02 5.257763e-02
## SoilCu 1.664041e-02 6.888830e-01
## SoilFe 2.806303e-01 2.586698e-01
## SoilK 2.031719e-02 1.856402e-09
## SoilMg 1.930212e-02 8.855625e-10
## SoilMn 4.293977e-02 6.522606e-01
## SoilMo 5.433981e-03 6.713565e-01
## SoilNi 3.240458e-02 5.331350e-02
## SoilP 4.469016e-03 2.195612e-02
## SoilS 1.308210e-02 9.670608e-01
## SoilZn 3.934145e-01 3.392392e-01
## BinePerPlantAl 6.189441e-07 1.870429e-06
## BinePerPlantB 4.346652e-04 2.097793e-05
## BinePerPLantCa 1.879302e-08 2.722832e-10
## BinePerPlantCo 2.742161e-15 1.498783e-07
## BinePerPlantCu 1.662257e-22 1.500002e-04
## BinePerPlantFe 1.795715e-10 6.686021e-02
## BinePerPlantK 2.191824e-11 1.486716e-06
## BinePerPlantMg 7.488919e-07 1.801935e-03
## BinePerPlantMn 1.582239e-02 8.134682e-04
## BinePerPlantMo 3.803741e-02 4.162545e-01
## BinePerPlantNi 1.293593e-13 8.595082e-09
## BinePerPlantP 6.477525e-32 4.116353e-02
## BinePerPlantSe 5.071793e-12 1.243600e-05
## BinePerPLantZn 2.479607e-05 1.110610e-01
## SeedPerPlantAl 6.013653e-05 3.836152e-14
## SeedPerPlantB 2.511611e-06 3.624437e-18
## SeedPerPlantCa 1.159623e-03 5.530222e-19
## SeedPerPlantCo 3.087553e-06 6.773402e-19
## SeedPerPlantCu 3.263286e-04 4.214653e-16
## SeedPerPlantFe 7.084980e-04 5.666990e-20
## SeedPerPlantK 2.348773e-05 6.620705e-21
## SeedPerPlantMg 2.697607e-05 4.513109e-18
## SeedPerPlantMn 4.118352e-04 8.721458e-29
## SeedPerPlantMo 3.859254e-04 8.237542e-06
## SeedPerPlantNi 4.966608e-04 3.235042e-08
## SeedPerPlantP 8.022092e-04 6.799553e-14
## SeedPerPlantS 3.389345e-05 1.255461e-17
## SeedPerPlantZn 5.757811e-05 3.805594e-118
## BineSeedPerPlantAl 6.013653e-05 3.836152e-14
## BineSeedPerPlantB 3.483649e-07 4.645371e-07
## BineSeedPerPlantCa 1.090501e-04 3.317320e-08
## BineSeedPerPlantCo 9.592827e-09 2.668637e-11
## BineSeedPerPlantCu 5.504962e-05 1.635921e-17
## BineSeedPerPlantFe 1.749092e-04 1.911396e-20
## BineSeedPerPlantK 1.947766e-12 2.632179e-03
## BineSeedPerPlantMg 3.285893e-12 6.933492e-10
## BineSeedPerPlantMo 4.601787e-05 3.477427e-29
## BineSeedPerPlantNi 7.313465e-04 3.065792e-06
## BineSeedPerPlantP 1.167841e-03 1.065834e-02
## BineSeedPerPlantS 1.327310e-04 2.103662e-15
## BineSeedPerPlantS.1 0.000000e+00 4.502710e-05
## BineSeedPerPlantZn 4.502710e-05 0.000000e+00library(ggplot2)
heatmaply::heatmaply(p,
scale_fill_gradient_fun = ggplot2::scale_colour_gradientn(colours = c("blue", "red"),
breaks = c(0.05),
space = "Lab",
oob = identity
)
)library(ggplot2)
heatmaply(p,
scale_fill_gradient_fun = ggplot2::scale_fill_gradientn(
colours = c("red","white","blue"),
values = scales::rescale(c(0, 0.05,1)),
breaks = c(0.05, 0.1),
guide = "colorbar",
limits = c(0 , 1)
)
)install.packages("BiocManager")
BiocManager::install("WGCNA") ####WGCNA
# WGCNA
library(vegan)
library(WGCNA)
physeq <- ps.f.dec
sample_names(physeq)
sample_names(physeq) <- paste0(ps.f.dec@sam_data$Description, "_", stringr::str_split_fixed(sample_names(physeq), "elimov.", 2)[,2])
sample_names(physeq) %in% c("s8473_In_41", "s8473_In_Al_45")
physeq <- prune_samples(sample_names(physeq) != c("s8473_In_41", "s8473_In_Al_45"), physeq)
physeq <- prune_taxa(taxa_sums(physeq) > 10, physeq)
physeq@sam_data@row.names
physeq
physeq.var <- varstab(physeq)
otus <- veganifyOTU(physeq.var)
head(otus)
gsg = goodSamplesGenes(otus.d[-1], verbose = 3)
gsg
otus.d <- as.data.frame(otus)
sampleTree = hclust(dist(otus.d), method = "average");
sizeGrWindow(12,9)
par(cex = 0.6);
par(mar = c(0,4,2,0))
plot(sampleTree, main = "Sample clustering to detect outliers", sub="", xlab="", cex.lab = 1.5, cex.axis = 1.5, cex.main = 2)
metadata <- physeq@sam_data
OTUSamples = rownames(otus.d)
MetaSamples = rownames(metadata)
traitRows = match(OTUSamples, MetaSamples)
traitRows
datTraits = traitData[traitRows, -1];
rownames(datTraits) = traitData[traitRows, 1];
collectGarbage()
sampleTree2 = hclust(dist(otus.d), method = "average")
traitColors = numbers2colors(metadata[,5:111], signed = FALSE)
length(metadata)
View(data.frame(metadata))
metadata.little <- metadata
# small metadata?
enableWGCNAThreads()
powers = c(c(1:10), seq(from = 11, to=30, by=1))
sft = pickSoftThreshold(otus.d, powerVector = powers, verbose = 5, networkType = "signed")
sizeGrWindow(9, 5)
par(mfrow = c(1,2));
cex1 = 0.9;
plot(sft$fitIndices[,1], -sign(sft$fitIndices[,3])*sft$fitIndices[,2],
xlab="Soft Threshold (power)",ylab="Scale Free Topology Model Fit,signed R^2",type="n",
main = paste("Scale independence"));
text(sft$fitIndices[,1], -sign(sft$fitIndices[,3])*sft$fitIndices[,2],
labels=powers,cex=cex1,col="red");
abline(h=0.8,col="red")
plot(sft$fitIndices[,1], sft$fitIndices[,5],
xlab="Soft Threshold (power)",ylab="Mean Connectivity", type="n",
main = paste("Mean connectivity"))
text(sft$fitIndices[,1], sft$fitIndices[,5], labels=powers, cex=cex1,col="red")
softPower = 17;
adjacency = adjacency(otus.d, power = softPower, type = "signed");
TOM = TOMsimilarity(adjacency, TOMType = "signed");
dissTOM = 1-TOM
TaxaTree = hclust(as.dist(dissTOM), method = "average");
TaxaTree = hclust(as.dist(dissTOM), method = "average");
sizeGrWindow(12,9)
plot(TaxaTree, xlab="", sub="", main = "Taxa clustering on TOM-based dissimilarity",
labels = FALSE, hang = 0.04);
minModuleSize = 50;
dynamicMods = cutreeDynamic(dendro = TaxaTree, distM = dissTOM,
deepSplit = 2, pamRespectsDendro = FALSE,
minClusterSize = minModuleSize);
dynamicColors = labels2colors(dynamicMods)
table(dynamicColors)
sizeGrWindow(8,6)
plotDendroAndColors(TaxaTree, dynamicColors, "Dynamic Tree Cut",
dendroLabels = FALSE, hang = 0.03,
addGuide = TRUE, guideHang = 0.05,
main = "Taxa dendrogram and module colors")
MEList = moduleEigengenes(otus.d, colors = dynamicColors)
MEs = MEList$eigengenes
MEDiss = 1-cor(MEs)
METree = hclust(as.dist(MEDiss), method = "average")
sizeGrWindow(7, 6)
plot(METree, main = "Clustering of module eigengenes",
xlab = "", sub = "")
MEDissThres = 0.30
abline(h=MEDissThres, col = "red")
merge = mergeCloseModules(otus.d, dynamicColors, cutHeight = MEDissThres, verbose = 3)
mergedColors = merge$colors;
mergedMEs = merge$newMEs;
sizeGrWindow(12, 9)
mergedColors
plotDendroAndColors(TaxaTree, cbind(dynamicColors, mergedColors),
c("Dynamic Tree Cut", "Merged dynamic"),
dendroLabels = FALSE, hang = 0.03,
addGuide = TRUE, guideHang = 0.05)
moduleColors = mergedColors
colorOrder = c("grey", standardColors(50));
moduleLabels = match(moduleColors, colorOrder)-1;
MEs = mergedMEs;
save(MEs, moduleLabels, moduleColors, TaxaTree, file = "Monterey-networkConstruction-stepByStep.RData")
nTaxa = ncol(otus.d);
nSamples = nrow(otus.d);
MEs0 = moduleEigengenes(otus.d, moduleColors)$eigengenes
MEs = orderMEs(MEs0)
moduleTraitCor = cor(MEs, metadata, use = "p");
moduleTraitPvalue = corPvalueStudent(moduleTraitCor, nSamples);
sizeGrWindow(10,6)
textMatrix = paste(signif(moduleTraitCor, 2), "\n(",
signif(moduleTraitPvalue, 1), ")", sep = "");
dim(textMatrix) = dim(moduleTraitCor)
par(mar = c(6, 8.5, 3, 3));
labeledHeatmap(Matrix = moduleTraitCor,
xLabels = names(metadata),
yLabels = names(MEs),
ySymbols = names(MEs),
colorLabels = FALSE,
colors = greenWhiteRed(50),
textMatrix = textMatrix,
setStdMargins = FALSE,
cex.text = 0.5,
zlim = c(-1,1),
main = paste("Module-trait relationships"))
colnames(met.d)
length(colnames(met.d))
met.d <- data.frame(metadata)
met.d.num <- metadata[,6:110]
met.d.num.scaled <- scale(met.d.num)
View(met.d.num.scaled)
# nmds for factors?
dist.met.scaled <- vegdist(t(met.d.num.scaled), method = "euclidean", na.rm = TRUE)
dist.met.scaled
met.nmds <-
metaMDS(t(met.d.num.scaled),
distance = "euclidean",na.rm = TRUE,
k = 3,
maxit = 999,
trymax = 500,
wascores = TRUE)
dev.off()
stressplot(met.nmds)
plot(met.nmds, "sites")
orditorp(met.nmds, "sites")
# scaled - shit
# unscaled - not work at all
res <- pcoa(dist.met.scaled)
res$values
biplot(res)
# pcoa -same shit
hclust.met <- hclust(dist.met.scaled)
plot(hclust.met, main = "metadata scaled euclidian")
#
sampleTree2 <- hclust(dist(met.d.num), method = "average")
traitColors = numbers2colors(met.d.num, signed = FALSE);
plotDendroAndColors(sampleTree2, traitColors,
groupLabels = names(met.d.num),
main = "Sample dendrogram and trait heatmap")
View(met.d)